Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-12-31.obo; date: 23:12:2011 10:41; CVS revision: 1.2470
  • file 2 (new): go-2012-01-07.obo; date: 06:01:2012 16:33; CVS revision: 1.2481

Obsoletions

None

Term merges

Old ID Old name Merged into Merged term name
GO:0007513pericardial cell differentiationGO:0061320pericardial nephrocyte differentiation
GO:0007514garland cell differentiationGO:0061321garland nephrocyte differentiation

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name alt_id def comment synonym xref is_a intersection_of relationship
Term ID name alt_id def comment synonym xref is_a intersection_of relationship
GO:0003094
glomerular filtration		 1 D, 1 A
GO:0003381
epithelial cell morphogenesis involved in gastrulation		 1 D 1 A
GO:0004430
1-phosphatidylinositol 4-kinase activity		 1 D
GO:0004438
phosphatidylinositol-3-phosphatase activity		 1 D
GO:0007249
I-kappaB kinase/NF-kappaB cascade		 C 2 D, 3 A 1 A
GO:0007250
activation of NF-kappaB-inducing kinase activity		 1 D
GO:0007252
I-kappaB phosphorylation		 C 4 A
GO:0007253
cytoplasmic sequestering of NF-kappaB		 1 D, 1 A
GO:0007263
nitric oxide mediated signal transduction		 C
GO:0008384
IkappaB kinase activity		 C 1 A
GO:0008385
IkappaB kinase complex		 C
GO:0008588
release of cytoplasmic sequestered NF-kappaB		 1 A
GO:0009740
gibberellic acid mediated signaling pathway		 1 D
GO:0009753
response to jasmonic acid stimulus		 2 D, 1 A
GO:0009867
jasmonic acid mediated signaling pathway		 2 A 1 D, 1 A
GO:0010162
seed dormancy process		 C C 1 A
GO:0010476
gibberellin mediated signaling pathway		 1 A
GO:0016303
1-phosphatidylinositol-3-kinase activity		 1 D, 1 A
GO:0016307
phosphatidylinositol phosphate kinase activity		 1 D
GO:0016314
phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity		 1 D
GO:0016316
phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity		 1 D
GO:0022002
negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway		 2 D
GO:0022003
negative regulation of anterior neural cell fate commitment of the neural plate by fibroblast growth factor receptor signaling pathway		 2 D
GO:0022611
dormancy process		 C A 1 A
GO:0032958
inositol phosphate biosynthetic process		 D
GO:0033217
regulation of transcription from RNA polymerase II promoter in response to iron ion starvation		 C
GO:0033256
I-kappaB/NF-kappaB complex		 C
GO:0033885
lipid-phosphate phosphatase activity		 4 D, 5 A
GO:0034597
phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity		 1 D
GO:0035004
phosphatidylinositol 3-kinase activity		 3 D, 1 A
GO:0035005
1-phosphatidylinositol-4-phosphate 3-kinase activity		 1 D
GO:0039528
cytoplasmic pattern recognition receptor signaling pathway in response to virus		 1 A
GO:0042348
NF-kappaB import into nucleus		 1 A 1 A
GO:0042599
lamellar body		 C 2 D, 2 A
GO:0042751
estivation		 1 A
GO:0042770
signal transduction in response to DNA damage		 2 D
GO:0046746
virus budding from nuclear membrane by viral capsid re-envelopment		 2 D
GO:0046747
virus budding from Golgi membrane by viral capsid re-envelopment		 2 D
GO:0046748
virus budding from ER membrane by viral capsid re-envelopment		 2 D
GO:0046749
virus budding from nuclear membrane by viral capsid envelopment		 2 D
GO:0046750
virus budding from Golgi membrane by viral capsid envelopment		 2 D
GO:0046751
virus budding from ER membrane by viral capsid envelopment		 2 D
GO:0046767
virus budding from plasma membrane by viral capsid envelopment		 2 D
GO:0046768
virus budding from plasma membrane by viral capsid re-envelopment		 2 D
GO:0050977
magnetoreception by sensory perception of chemical stimulus		 2 D
GO:0050978
magnetoreception by sensory perception of electrical stimulus		 2 D
GO:0051800
phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity		 1 D
GO:0052482
defense response by cell wall thickening		 2 D
GO:0052542
defense response by callose deposition		 2 D
GO:0052742
phosphatidylinositol kinase activity		 1 A
GO:0052813
phosphatidylinositol bisphosphate kinase activity		 1 A
GO:0060852
regulation of transcription involved in venous endothelial cell fate commitment		 1 D 1 A
GO:0061006
regulation of cell proliferation involved in kidney morphogenesis		 1 D 1 A
GO:0061320
pericardial nephrocyte differentiation		 1 A 1 A 1 A
GO:0061321
garland nephrocyte differentiation		 1 A 1 A 1 A
GO:0070178
D-serine metabolic process		 1 A
GO:0070335
aspartate binding		 C
GO:0071395
cellular response to jasmonic acid stimulus		 2 D, 1 A
GO:0071847
TNFSF11-mediated signaling pathway		 C
GO:0072535
tumor necrosis factor (ligand) superfamily member 11 production		 2 D, 3 A
GO:0090375
negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation		 C 1 A
GO:0097201
negative regulation of transcription from RNA polymerase II promoter in response to stress		 1 A
GO:2000033
regulation of seed dormancy process		 C C 1 A

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9203
9203 (100.0%) defined 		9205
9205 (100.0%) defined 		+2
cellular component 2941
2941 (100.0%) defined 		2944
2944 (100.0%) defined 		+3
biological process 21753
21753 (100.0%) defined 		21765
21765 (100.0%) defined 		+12
Obsolete 1609
(4.5% of total)		 1609
(4.5% of total)		 0 (0.0%)
Totals 33897
33897 (100.0%) defined
35506 inc. obsoletes 		33914
33914 (100.0%) defined
35523 inc. obsoletes 		+17 (0.0%)

Ontology report info