Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-12-10.obo; date: 09:12:2011 12:27; CVS revision: 1.2428
  • file 2 (new): go-2011-12-17.obo; date: 15:12:2011 15:48; CVS revision: 1.2455

New terms

ID name namespace
GO:0036044 protein malonylation biological_process
GO:0036045 peptidyl-lysine malonylation biological_process
GO:0036046 protein demalonylation biological_process
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036048 protein desuccinylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0036050 peptidyl-lysine succinylation biological_process
GO:0036051 protein localization to trailing edge biological_process
GO:0036052 protein localization to uropod biological_process
GO:0036053 glomerular endothelium fenestra cellular_component
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0036056 filtration diaphragm cellular_component
GO:0036057 slit diaphragm cellular_component
GO:0036058 filtration diaphragm assembly biological_process
GO:0036059 nephrocyte diaphragm assembly biological_process
GO:0036060 slit diaphragm assembly biological_process
GO:0036061 muscle cell chemotaxis toward tendon cell biological_process
GO:0036062 presynaptic periactive zone cellular_component
GO:0036063 acroblast cellular_component
GO:0036064 cilium basal body cellular_component
GO:0036065 fucosylation biological_process
GO:0036066 protein O-linked fucosylation biological_process
GO:0036067 light-dependent chlorophyll biosynthetic process biological_process
GO:0036068 light-independent chlorophyll biosynthetic process biological_process
GO:0036069 light-dependent bacteriochlorophyll biosynthetic process biological_process
GO:0036070 light-independent bacteriochlorophyll biosynthetic process biological_process
GO:0036071 N-glycan fucosylation biological_process
GO:0038055 BMP secretion biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0044382 CLRC ubiquitin ligase complex localization to heterochromatin biological_process
GO:0044383 host chromosome cellular_component
GO:0044384 host cell outer membrane cellular_component
GO:0044385 integral to membrane of host cell cellular_component
GO:0044386 integral to host endoplasmic reticulum membrane cellular_component
GO:0044387 negative regulation of protein kinase activity by regulation of protein phosphorylation biological_process
GO:0044388 small protein activating enzyme binding molecular_function
GO:0044389 small conjugating protein ligase binding molecular_function
GO:0044390 small protein conjugating enzyme binding molecular_function
GO:0044391 ribosomal subunit cellular_component
GO:0044392 peptidyl-lysine malonylation biological_process
GO:0044393 microspike cellular_component
GO:0044394 protein malonylation biological_process
GO:0052866 phosphatidylinositol phosphate phosphatase activity molecular_function
GO:0061392 regulation of transcription from RNA polymerase II promoter in response to osmotic stress biological_process
GO:0061393 positive regulation of transcription from RNA polymerase II promoter in response to osmotic stress biological_process
GO:0061394 regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance biological_process
GO:0061395 positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance biological_process
GO:0090420 naphthalene-containing compound metabolic process biological_process
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function
GO:0097201 negative regulation of transcription from RNA polymerase II promoter in response to stress biological_process
GO:2001253 regulation of histone H3-K36 trimethylation biological_process
GO:2001254 negative regulation of histone H3-K36 trimethylation biological_process
GO:2001255 positive regulation of histone H3-K36 trimethylation biological_process
GO:2001256 regulation of store-operated calcium entry biological_process
GO:2001257 regulation of cation channel activity biological_process
GO:2001258 negative regulation of cation channel activity biological_process
GO:2001259 positive regulation of cation channel activity biological_process
GO:2001260 regulation of semaphorin-plexin signaling pathway biological_process
GO:2001261 negative regulation of semaphorin-plexin signaling pathway biological_process
GO:2001262 positive regulation of semaphorin-plexin signaling pathway biological_process
GO:2001263 regulation of C-C chemokine binding biological_process
GO:2001264 negative regulation of C-C chemokine binding biological_process
GO:2001265 positive regulation of C-C chemokine binding biological_process
GO:2001266 Roundabout signaling pathway involved in axon guidance biological_process
GO:2001267 regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway biological_process
GO:2001268 negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway biological_process
GO:2001269 positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway biological_process
GO:2001270 regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:2001272 positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:2001273 regulation of glucose import in response to insulin stimulus biological_process
GO:2001274 negative regulation of glucose import in response to insulin stimulus biological_process
GO:2001275 positive regulation of glucose import in response to insulin stimulus biological_process
GO:2001276 regulation of leucine biosynthetic process biological_process
GO:2001277 negative regulation of leucine biosynthetic process biological_process
GO:2001278 positive regulation of leucine biosynthetic process biological_process
GO:2001279 regulation of unsaturated fatty acid biosynthetic process biological_process
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process biological_process
GO:2001281 regulation of muscle cell chemotaxis toward tendon cell biological_process
GO:2001282 negative regulation of muscle cell chemotaxis toward tendon cell biological_process
GO:2001283 Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell biological_process
GO:2001284 regulation of BMP secretion biological_process
GO:2001285 negative regulation of BMP secretion biological_process
GO:2001286 regulation of caveolin-mediated endocytosis biological_process
GO:2001287 negative regulation of caveolin-mediated endocytosis biological_process
GO:2001288 positive regulation of caveolin-mediated endocytosis biological_process

Obsoletions

ID name namespace
GO:0036043 microspike cellular_component

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment subset synonym is_a relationship is_obsolete replaced_by
Term ID name def comment subset synonym is_a relationship is_obsolete replaced_by
GO:0001669
acrosomal vesicle		 1 A
GO:0003948
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity		 1 D, 1 A
GO:0005840
ribosome		 1 D
GO:0005917
nephrocyte diaphragm		 C C 1 A 1 D, 1 A
GO:0008417
fucosyltransferase activity		 1 A
GO:0008418
protein-N-terminal asparagine amidohydrolase activity		 C C 1 D, 1 A
GO:0008424
glycoprotein 6-alpha-L-fucosyltransferase activity		 1 A
GO:0010045
response to nickel cation		 C C
GO:0010416
arabinoxylan-containing compound metabolic process		 C C
GO:0010462
regulation of light-activated voltage-gated calcium channel activity		 1 A
GO:0015099
nickel cation transmembrane transporter activity		 C C
GO:0015416
organic phosphonate transmembrane-transporting ATPase activity		 C
GO:0015604
organic phosphonate transmembrane transporter activity		 C
GO:0015675
nickel cation transport		 C C
GO:0015716
organic phosphonate transport		 C
GO:0015717
triose phosphate transport		 1 A
GO:0015934
large ribosomal subunit		 1 D, 1 A 1 D
GO:0015935
small ribosomal subunit		 1 D, 1 A 1 D
GO:0016151
nickel cation binding		 C C
GO:0018062
peptidyl-tryptophan succinylation		 1 A
GO:0018335
protein succinylation		 C 1 D, 1 A
GO:0018931
naphthalene metabolic process		 1 D, 1 A
GO:0018984
naphthalenesulfonate metabolic process		 1 D, 1 A
GO:0019634
organic phosphonate metabolic process		 C C
GO:0019700
organic phosphonate catabolic process		 C
GO:0031392
regulation of prostaglandin biosynthetic process		 1 D, 1 A
GO:0031394
positive regulation of prostaglandin biosynthetic process		 1 D, 1 A
GO:0031585
regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity		 1 D, 1 A
GO:0031586
negative regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity		 1 D, 1 A
GO:0031587
positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity		 1 D, 1 A
GO:0031624
ubiquitin conjugating enzyme binding		 1 D, 1 A
GO:0031625
ubiquitin protein ligase binding		 1 D, 1 A
GO:0032234
regulation of calcium ion transport via store-operated calcium channel activity		 1 D, 1 A
GO:0032235
negative regulation of calcium ion transport via store-operated calcium channel activity		 1 D, 1 A
GO:0032236
positive regulation of calcium ion transport via store-operated calcium channel activity		 1 D, 1 A
GO:0032923
organic phosphonate biosynthetic process		 C
GO:0033134
ubiquitin activating enzyme binding		 1 D, 1 A
GO:0034593
phosphatidylinositol bisphosphate phosphatase activity		 1 D, 1 A
GO:0034594
phosphatidylinositol trisphosphate phosphatase activity		 1 D, 1 A
GO:0034595
phosphatidylinositol phosphate 5-phosphatase activity		 C 1 D, 1 A
GO:0034596
phosphatidylinositol phosphate 4-phosphatase activity		 C 1 D, 1 A
GO:0035372
protein localization to microtubule		 1 D, 1 A
GO:0035444
nickel cation transmembrane transport		 C C
GO:0035602
fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow		 C C 1 A
GO:0035784
nickel cation homeostasis		 C C
GO:0035853
chromosome passenger complex localization to spindle midzone		 1 D, 1 A
GO:0036043
microspike		 C C 1 D A 1 A
GO:0042242
cobyrinic acid a,c-diamide synthase activity		 1 A 1 D, 1 A
GO:0043635
methylnaphthalene catabolic process		 1 A
GO:0044084
host cell membrane pore complex		 1 D, 1 A 1 A
GO:0044161
host cell cytoplasmic vesicle		 1 D, 1 A
GO:0044163
host cytoskeleton		 1 D, 1 A
GO:0044193
host cell mitochondrial outer membrane		 1 A
GO:0044202
host cell nuclear outer membrane		 1 A
GO:0044379
protein localization to actin cortical patch		 1 D, 1 A
GO:0046922
peptide-O-fucosyltransferase activity		 1 A
GO:0050417
glutamin-(asparagin-)ase activity		 1 A
GO:0052744
phosphatidylinositol monophosphate phosphatase activity		 C 1 D, 1 A
GO:0052849
NADPH-dependent curcumin reductase activity		 C
GO:0052850
NADPH-dependent dihydrocurcumin reductase activity		 C C 1 D, 1 A
GO:0060314
regulation of ryanodine-sensitive calcium-release channel activity		 1 D, 1 A
GO:0060315
negative regulation of ryanodine-sensitive calcium-release channel activity		 1 D, 1 A
GO:0060316
positive regulation of ryanodine-sensitive calcium-release channel activity		 1 D, 1 A
GO:0070773
protein-N-terminal glutamine amidohydrolase activity		 C C 1 A
GO:0071539
protein localization to centrosome		 1 D, 1 A
GO:0071839
apoptotic process in bone marrow		 C C 1 A
GO:0071865
regulation of apoptotic process in bone marrow		 C C 1 A
GO:0071866
negative regulation of apoptotic process in bone marrow		 C C 1 A
GO:0071988
protein localization to spindle pole body		 1 D, 1 A
GO:2000764
positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis		 2 D, 1 A
GO:2000888
arabinoxylan-containing compound catabolic process		 C
GO:2000921
regulation of arabinoxylan-containing compound catabolic process		 C C
GO:2000922
negative regulation of arabinoxylan-containing compound catabolic process		 C C
GO:2000923
positive regulation of arabinoxylan-containing compound catabolic process		 C C
GO:2001115
methanopterin-containing compound metabolic process		 C
GO:2001116
methanopterin-containing compound biosynthetic process		 C
GO:2001118
tetrahydromethanopterin biosynthetic process		 1 D, 1 A
GO:2001120
methanofuran biosynthetic process		 1 D, 1 A

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9193
9193 (100.0%) defined 		9201
9201 (100.0%) defined 		+8
cellular component 2927
2927 (100.0%) defined 		2938
2938 (100.0%) defined 		+11
biological process 21664
21664 (100.0%) defined 		21730
21730 (100.0%) defined 		+66
Obsolete 1606
(4.5% of total)		 1609
(4.5% of total)		 +3 (+0.2%)
Totals 33784
33784 (100.0%) defined
35390 inc. obsoletes 		33869
33869 (100.0%) defined
35478 inc. obsoletes 		+88 (+0.2%)

Ontology report info