Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-12-10.obo; date: 09:12:2011 12:27; CVS revision: 1.2428
  • file 2 (new): go-2011-12-17.obo; date: 15:12:2011 15:48; CVS revision: 1.2455

New terms

ID name namespace
GO:0036044 protein malonylation biological_process
GO:0036045 peptidyl-lysine malonylation biological_process
GO:0036046 protein demalonylation biological_process
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036048 protein desuccinylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0036050 peptidyl-lysine succinylation biological_process
GO:0036051 protein localization to trailing edge biological_process
GO:0036052 protein localization to uropod biological_process
GO:0036053 glomerular endothelium fenestra cellular_component
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0036056 filtration diaphragm cellular_component
GO:0036057 slit diaphragm cellular_component
GO:0036058 filtration diaphragm assembly biological_process
GO:0036059 nephrocyte diaphragm assembly biological_process
GO:0036060 slit diaphragm assembly biological_process
GO:0036061 muscle cell chemotaxis toward tendon cell biological_process
GO:0036062 presynaptic periactive zone cellular_component
GO:0036063 acroblast cellular_component
GO:0036064 cilium basal body cellular_component
GO:0036065 fucosylation biological_process
GO:0036066 protein O-linked fucosylation biological_process
GO:0036067 light-dependent chlorophyll biosynthetic process biological_process
GO:0036068 light-independent chlorophyll biosynthetic process biological_process
GO:0036069 light-dependent bacteriochlorophyll biosynthetic process biological_process
GO:0036070 light-independent bacteriochlorophyll biosynthetic process biological_process
GO:0036071 N-glycan fucosylation biological_process
GO:0038055 BMP secretion biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0044382 CLRC ubiquitin ligase complex localization to heterochromatin biological_process
GO:0044383 host chromosome cellular_component
GO:0044384 host cell outer membrane cellular_component
GO:0044385 integral to membrane of host cell cellular_component
GO:0044386 integral to host endoplasmic reticulum membrane cellular_component
GO:0044387 negative regulation of protein kinase activity by regulation of protein phosphorylation biological_process
GO:0044388 small protein activating enzyme binding molecular_function
GO:0044389 small conjugating protein ligase binding molecular_function
GO:0044390 small protein conjugating enzyme binding molecular_function
GO:0044391 ribosomal subunit cellular_component
GO:0044392 peptidyl-lysine malonylation biological_process
GO:0044393 microspike cellular_component
GO:0044394 protein malonylation biological_process
GO:0052866 phosphatidylinositol phosphate phosphatase activity molecular_function
GO:0061392 regulation of transcription from RNA polymerase II promoter in response to osmotic stress biological_process
GO:0061393 positive regulation of transcription from RNA polymerase II promoter in response to osmotic stress biological_process
GO:0061394 regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance biological_process
GO:0061395 positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance biological_process
GO:0090420 naphthalene-containing compound metabolic process biological_process
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function
GO:0097201 negative regulation of transcription from RNA polymerase II promoter in response to stress biological_process
GO:2001253 regulation of histone H3-K36 trimethylation biological_process
GO:2001254 negative regulation of histone H3-K36 trimethylation biological_process
GO:2001255 positive regulation of histone H3-K36 trimethylation biological_process
GO:2001256 regulation of store-operated calcium entry biological_process
GO:2001257 regulation of cation channel activity biological_process
GO:2001258 negative regulation of cation channel activity biological_process
GO:2001259 positive regulation of cation channel activity biological_process
GO:2001260 regulation of semaphorin-plexin signaling pathway biological_process
GO:2001261 negative regulation of semaphorin-plexin signaling pathway biological_process
GO:2001262 positive regulation of semaphorin-plexin signaling pathway biological_process
GO:2001263 regulation of C-C chemokine binding biological_process
GO:2001264 negative regulation of C-C chemokine binding biological_process
GO:2001265 positive regulation of C-C chemokine binding biological_process
GO:2001266 Roundabout signaling pathway involved in axon guidance biological_process
GO:2001267 regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway biological_process
GO:2001268 negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway biological_process
GO:2001269 positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway biological_process
GO:2001270 regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:2001272 positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:2001273 regulation of glucose import in response to insulin stimulus biological_process
GO:2001274 negative regulation of glucose import in response to insulin stimulus biological_process
GO:2001275 positive regulation of glucose import in response to insulin stimulus biological_process
GO:2001276 regulation of leucine biosynthetic process biological_process
GO:2001277 negative regulation of leucine biosynthetic process biological_process
GO:2001278 positive regulation of leucine biosynthetic process biological_process
GO:2001279 regulation of unsaturated fatty acid biosynthetic process biological_process
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process biological_process
GO:2001281 regulation of muscle cell chemotaxis toward tendon cell biological_process
GO:2001282 negative regulation of muscle cell chemotaxis toward tendon cell biological_process
GO:2001283 Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell biological_process
GO:2001284 regulation of BMP secretion biological_process
GO:2001285 negative regulation of BMP secretion biological_process
GO:2001286 regulation of caveolin-mediated endocytosis biological_process
GO:2001287 negative regulation of caveolin-mediated endocytosis biological_process
GO:2001288 positive regulation of caveolin-mediated endocytosis biological_process

Obsoletions

ID name namespace
GO:0036043 microspike
Replaced by: GO:0044393
This term was made obsolete because it accidentally reused an exisiting id. See replacement term GO:0044393. 		cellular_component

Term merges

None

Term changes

Changes in term-related data
File 1 (09:12:2011 12:27, 1.2428) File 2 (15:12:2011 15:48, 1.2455)
GO:0001669 : acrosomal vesicle
synonym
"acrosomal granule" EXACT [GOC:sart]
GO:0003948 : N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity
is_a
GO:0004067
 is_a
GO:0016811
GO:0005840 : ribosome
synonym
"ribosomal subunit" RELATED [GOC:mah, GOC:vw]
GO:0005917 : nephrocyte diaphragm
name
nephrocyte junction
def
A tissue-specific adherens junction found between nephrocyte cells. A nephrocyte is an insect excretory cell that regulates hemolymph composition by filtration and filtrate endocytosis.
is_a
GO:0005913
 name
nephrocyte diaphragm
def
A specialized cell-cell junction found between nephrocytes of the insect kidney, which is adapted for filtration of hemolymph. The insect nephrocyte is anatomically and functionally similarity to the glomerular podocyte of vertebrates.
synonym
"nephrocyte junction" RELATED [PMID:8314002]
is_a
GO:0036056
GO:0008417 : fucosyltransferase activity
relationship
part_of GO:0036065
GO:0008418 : protein-N-terminal asparagine amidohydrolase activity
name
protein N-terminal asparagine amidohydrolase activity
def
Catalysis of the deamidation of an N-terminal asparagine residue in a peptide or protein.
is_a
GO:0004067
 name
protein-N-terminal asparagine amidohydrolase activity
def
Catalysis of the reaction: protein-L-asparagine + H2O = protein-L-aspartate + NH3. This reaction is the deamidation of an N-terminal asparagine residue in a peptide or protein.
is_a
GO:0016811
GO:0008424 : glycoprotein 6-alpha-L-fucosyltransferase activity
relationship
part_of GO:0036071
GO:0010045 : response to nickel cation
name
response to nickel ion
def
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel ion stimulus.
 name
response to nickel cation
def
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel cation stimulus.
GO:0010416 : arabinoxylan-containing compound metabolic process
name
arabinoxylan metabolic process
def
The chemical reactions and pathways involving xylan, a polymer containing a beta-1,4-linked D-xylose backbone decorated with arabinose side units.
 name
arabinoxylan-containing compound metabolic process
def
The chemical reactions and pathways involving an arabinoxylan, a polymer containing a beta-1,4-linked D-xylose backbone decorated with arabinose side units.
GO:0010462 : regulation of light-activated voltage-gated calcium channel activity
is_a
GO:2001257
GO:0015099 : nickel cation transmembrane transporter activity
name
nickel ion transmembrane transporter activity
def
Catalysis of the transfer of nickel (Ni) ions from one side of a membrane to the other.
 name
nickel cation transmembrane transporter activity
def
Catalysis of the transfer of nickel (Ni) cations from one side of a membrane to the other.
GO:0015416 : organic phosphonate transmembrane-transporting ATPase activity
name
phosphonate transmembrane-transporting ATPase activity
 name
organic phosphonate transmembrane-transporting ATPase activity
GO:0015604 : organic phosphonate transmembrane transporter activity
name
phosphonate transmembrane transporter activity
 name
organic phosphonate transmembrane transporter activity
GO:0015675 : nickel cation transport
name
nickel ion transport
def
The directed movement of nickel (Ni) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
 name
nickel cation transport
def
The directed movement of nickel (Ni) cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0015716 : organic phosphonate transport
name
phosphonate transport
 name
organic phosphonate transport
GO:0015717 : triose phosphate transport
synonym
"aldotriose phosphate transport" EXACT []
GO:0015934 : large ribosomal subunit
is_a
GO:0030529
relationship
part_of GO:0005840
 is_a
GO:0044391
GO:0015935 : small ribosomal subunit
is_a
GO:0030529
relationship
part_of GO:0005840
 is_a
GO:0044391
GO:0016151 : nickel cation binding
name
nickel ion binding
def
Interacting selectively and non-covalently with nickel (Ni) ions.
 name
nickel cation binding
def
Interacting selectively and non-covalently with nickel (Ni) cations.
GO:0018062 : peptidyl-tryptophan succinylation
is_a
GO:0031365
GO:0018335 : protein succinylation
def
The modification of a protein amino acid by succinylation.
is_a
GO:0006464
 def
The modification of a protein by the addition of a succinyl group (CO-CH2-CH2-CO) to an amino acid residue.
is_a
GO:0043543
GO:0018931 : naphthalene metabolic process
is_a
GO:0042537
 is_a
GO:0090420
GO:0018984 : naphthalenesulfonate metabolic process
is_a
GO:0018931
 is_a
GO:0090420
GO:0019634 : organic phosphonate metabolic process
name
phosphonate metabolic process
def
The chemical reactions and pathways involving of phosphonates, any organic compound containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Metabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.
 name
organic phosphonate metabolic process
def
The chemical reactions and pathways involving phosphonates, any organic compounds containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Metabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.
GO:0019700 : organic phosphonate catabolic process
name
phosphonate catabolic process
 name
organic phosphonate catabolic process
GO:0031392 : regulation of prostaglandin biosynthetic process
is_a
GO:0042304
 is_a
GO:2001279
GO:0031394 : positive regulation of prostaglandin biosynthetic process
is_a
GO:0045723
 is_a
GO:2001280
GO:0031585 : regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
is_a
GO:0032412
 is_a
GO:2001257
GO:0031586 : negative regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
is_a
GO:0032413
 is_a
GO:2001258
GO:0031587 : positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
is_a
GO:0032414
 is_a
GO:2001259
GO:0031624 : ubiquitin conjugating enzyme binding
is_a
GO:0019899
 is_a
GO:0044390
GO:0031625 : ubiquitin protein ligase binding
is_a
GO:0019899
 is_a
GO:0044389
GO:0032234 : regulation of calcium ion transport via store-operated calcium channel activity
is_a
GO:0032412
 is_a
GO:2001257
GO:0032235 : negative regulation of calcium ion transport via store-operated calcium channel activity
is_a
GO:0032413
 is_a
GO:2001258
GO:0032236 : positive regulation of calcium ion transport via store-operated calcium channel activity
is_a
GO:0032414
 is_a
GO:2001259
GO:0032923 : organic phosphonate biosynthetic process
name
phosphonate biosynthetic process
 name
organic phosphonate biosynthetic process
GO:0033134 : ubiquitin activating enzyme binding
is_a
GO:0019899
 is_a
GO:0044388
GO:0034593 : phosphatidylinositol bisphosphate phosphatase activity
is_a
GO:0016791
 is_a
GO:0052866
GO:0034594 : phosphatidylinositol trisphosphate phosphatase activity
is_a
GO:0016791
 is_a
GO:0052866
GO:0034595 : phosphatidylinositol phosphate 5-phosphatase activity
def
Catalysis of the removal the of the 5-phosphate group of a phosphatidylinositol phosphate.
is_a
GO:0016791
 def
Catalysis of the removal of the 5-phosphate group of a phosphatidylinositol phosphate.
is_a
GO:0052866
GO:0034596 : phosphatidylinositol phosphate 4-phosphatase activity
def
Catalysis of the removal the of the 4-phosphate group of a phosphatidylinositol phosphate.
is_a
GO:0016791
 def
Catalysis of the removal of the 4-phosphate group of a phosphatidylinositol phosphate.
is_a
GO:0052866
GO:0035372 : protein localization to microtubule
is_a
GO:0033365
 is_a
GO:0044380
GO:0035444 : nickel cation transmembrane transport
name
nickel ion transmembrane transport
def
The directed movement of nickel (Ni) ions across a membrane by means of some agent such as a transporter or pore.
 name
nickel cation transmembrane transport
def
The directed movement of nickel (Ni) cations across a membrane by means of some agent such as a transporter or pore.
GO:0035602 : fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow
name
fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow
def
The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands, which stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptosis in the bone marrow.
 name
fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow
def
The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands, which stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptotic process in the bone marrow.
synonym
"fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow" NARROW []
GO:0035784 : nickel cation homeostasis
name
nickel ion homeostasis
def
Any process involved in the maintenance of an internal steady state of nickel ions within an organism or cell.
 name
nickel cation homeostasis
def
Any process involved in the maintenance of an internal steady state of nickel cations within an organism or cell.
GO:0035853 : chromosome passenger complex localization to spindle midzone
is_a
GO:0033365
 is_a
GO:0044380
GO:0036043 : microspike
def
A dynamic, actin-rich projection extending from the surface of a migrating animal cell.
comment
Although in some literature 'microspike' and 'filopodium' are used synonymously, in GO microspike refers to a cell projection that is distinct from a filopodium. See also 'filopodium ; GO:0030175'.
is_a
GO:0042995
 def
OBSOLETE. A dynamic, actin-rich projection extending from the surface of a migrating animal cell.
comment
This term was made obsolete because it accidentally reused an exisiting id. See replacement term GO:0044393.
is_obsolete
true
replaced_by
GO:0044393
GO:0042242 : cobyrinic acid a,c-diamide synthase activity
is_a
GO:0004359
 subset
mf_needs_review
is_a
GO:0016811
GO:0043635 : methylnaphthalene catabolic process
is_a
GO:0090420
GO:0044084 : host cell membrane pore complex
is_a
GO:0033644
 is_a
GO:0033643
relationship
part_of GO:0033644
GO:0044161 : host cell cytoplasmic vesicle
is_a
GO:0033647
 is_a
GO:0033648
GO:0044163 : host cytoskeleton
is_a
GO:0033646
 is_a
GO:0033647
GO:0044193 : host cell mitochondrial outer membrane
is_a
GO:0044384
GO:0044202 : host cell nuclear outer membrane
is_a
GO:0044384
GO:0044379 : protein localization to actin cortical patch
is_a
GO:0033365
 is_a
GO:0044380
GO:0046922 : peptide-O-fucosyltransferase activity
relationship
part_of GO:0036066
GO:0050417 : glutamin-(asparagin-)ase activity
subset
mf_needs_review
GO:0052744 : phosphatidylinositol monophosphate phosphatase activity
def
Catalysis of the reaction: phosphatidylinositol phosphate + H2O = phosphatidylinositol + phosphate.
is_a
GO:0016791
 def
Catalysis of the reaction: phosphatidylinositol monophosphate + H2O = phosphatidylinositol + phosphate.
is_a
GO:0052866
GO:0052849 : NADPH-dependent curcumin reductase activity
name
NADPH-dependent curcurmin reductase activity
 name
NADPH-dependent curcumin reductase activity
GO:0052850 : NADPH-dependent dihydrocurcumin reductase activity
name
NADPH-dependent dihydrocurcurmin reductase activity
def
Catalysis of the reaction: dihydrocurcurmin + NADPH+ + H+ = tetrahydrocurcurmin + NADP+.
synonym
"dihydrocurcurmin reductase (NADPH) activity" EXACT []
 name
NADPH-dependent dihydrocurcumin reductase activity
def
Catalysis of the reaction: dihydrocurcumin + NADPH+ + H+ = tetrahydrocurcumin + NADP+.
synonym
"dihydrocurcumin reductase (NADPH) activity" EXACT []
GO:0060314 : regulation of ryanodine-sensitive calcium-release channel activity
is_a
GO:0032412
 is_a
GO:2001257
GO:0060315 : negative regulation of ryanodine-sensitive calcium-release channel activity
is_a
GO:0032413
 is_a
GO:2001258
GO:0060316 : positive regulation of ryanodine-sensitive calcium-release channel activity
is_a
GO:0032414
 is_a
GO:2001259
GO:0070773 : protein-N-terminal glutamine amidohydrolase activity
name
protein N-terminal glutamine amidohydrolase activity
def
Catalysis of the deamidation of an N-terminal glutamin residue of a protein.
 name
protein-N-terminal glutamine amidohydrolase activity
def
Catalysis of the reaction: protein-N-terminal-L-glutamine + H2O = protein-N-terminal-L-glutamate + NH3. This reaction is the deamidation of an N-terminal glutamine residue of a protein.
subset
mf_needs_review
GO:0071539 : protein localization to centrosome
is_a
GO:0033365
 is_a
GO:0044380
GO:0071839 : apoptotic process in bone marrow
name
apoptosis in bone marrow
def
The process of apoptosis in cells in the bone marrow.
 name
apoptotic process in bone marrow
def
The apoptotic process in cells in the bone marrow.
synonym
"apoptosis in bone marrow" NARROW []
GO:0071865 : regulation of apoptotic process in bone marrow
name
regulation of apoptosis in bone marrow
def
Any process that modulates the occurrence or rate of cell death by apoptosis in the bone marrow.
 name
regulation of apoptotic process in bone marrow
def
Any process that modulates the occurrence or rate of cell death by apoptotic process in the bone marrow.
synonym
"regulation of apoptosis in bone marrow" NARROW []
GO:0071866 : negative regulation of apoptotic process in bone marrow
name
negative regulation of apoptosis in bone marrow
def
Any process that stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptosis in the bone marrow.
 name
negative regulation of apoptotic process in bone marrow
def
Any process that stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptotic process in the bone marrow.
synonym
"negative regulation of apoptosis in bone marrow" NARROW []
GO:0071988 : protein localization to spindle pole body
is_a
GO:0033365
 is_a
GO:0044380
GO:2000764 : positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis
is_a
GO:0009967
GO:0048522
 is_a
GO:2001262
GO:2000888 : arabinoxylan-containing compound catabolic process
name
arabinoxylan catabolic process
 name
arabinoxylan-containing compound catabolic process
GO:2000921 : regulation of arabinoxylan-containing compound catabolic process
name
regulation of arabinoxylan catabolic process
def
Any process that modulates the frequency, rate or extent of arabinoxylan catabolic process.
 name
regulation of arabinoxylan-containing compound catabolic process
def
Any process that modulates the frequency, rate or extent of arabinoxylan-containing compound catabolic process.
GO:2000922 : negative regulation of arabinoxylan-containing compound catabolic process
name
negative regulation of arabinoxylan catabolic process
def
Any process that stops, prevents or reduces the frequency, rate or extent of arabinoxylan catabolic process.
 name
negative regulation of arabinoxylan-containing compound catabolic process
def
Any process that stops, prevents or reduces the frequency, rate or extent of arabinoxylan-containing compound catabolic process.
GO:2000923 : positive regulation of arabinoxylan-containing compound catabolic process
name
positive regulation of arabinoxylan catabolic process
def
Any process that activates or increases the frequency, rate or extent of arabinoxylan catabolic process.
 name
positive regulation of arabinoxylan-containing compound catabolic process
def
Any process that activates or increases the frequency, rate or extent of arabinoxylan-containing compound catabolic process.
GO:2001115 : methanopterin-containing compound metabolic process
name
methanopterin metabolic process
 name
methanopterin-containing compound metabolic process
GO:2001116 : methanopterin-containing compound biosynthetic process
name
methanopterin biosynthetic process
 name
methanopterin-containing compound biosynthetic process
GO:2001118 : tetrahydromethanopterin biosynthetic process
is_a
GO:2001115
 is_a
GO:2001116
GO:2001120 : methanofuran biosynthetic process
is_a
GO:2001115
 is_a
GO:2001116

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9193
9193 (100.0%) defined 		9201
9201 (100.0%) defined 		+8
cellular component 2927
2927 (100.0%) defined 		2938
2938 (100.0%) defined 		+11
biological process 21664
21664 (100.0%) defined 		21730
21730 (100.0%) defined 		+66
Obsolete 1606
(4.5% of total)		 1609
(4.5% of total)		 +3 (+0.2%)
Totals 33784
33784 (100.0%) defined
35390 inc. obsoletes 		33869
33869 (100.0%) defined
35478 inc. obsoletes 		+88 (+0.2%)

Ontology report info