Gene Ontology
Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2011-11-26.obo; date: 24:11:2011 22:03; CVS revision: 1.2403
- file 2 (new): go-2011-12-03.obo; date: 02:12:2011 16:46; CVS revision: 1.2418

NEW TERMS
=========

ID	name	namespace
GO:0038049	ligand-activated RNA polymerase II transcription factor binding transcription factor activity	molecular_function
GO:0038050	glucocorticoid-activated sequence-specific DNA binding RNA polymerase II transcription factor activity	molecular_function
GO:0038051	glucocorticoid-activated RNA polymerase II transcription factor binding transcription factor activity	molecular_function
GO:0038052	estrogen-activated sequence-specific DNA binding RNA polymerase II transcription factor activity	molecular_function
GO:0038053	estrogen-activated RNA polymerase II transcription factor binding transcription factor activity	molecular_function
GO:0038054	G-protein coupled estrogen receptor activity	molecular_function
GO:0044373	cytokinin binding	molecular_function
GO:0044374	sequence-specific DNA binding, bending	molecular_function
GO:0044375	regulation of peroxisome size	biological_process
GO:0044376	RNA polymerase II complex localization to nucleus	biological_process
GO:0052825	inositol-1,3,4,5,6-pentakisphosphate 1-phosphatase activity	molecular_function
GO:0052826	inositol hexakisphosphate 2-phosphatase activity	molecular_function
GO:0052827	inositol pentakisphosphate phosphatase activity	molecular_function
GO:0052828	inositol-3,4-bisphosphate 4-phosphatase activity	molecular_function
GO:0052829	inositol-1,3,4-trisphosphate 1-phosphatase activity	molecular_function
GO:0052830	inositol-1,3,4,6-tetrakisphosphate 6-phosphatase activity	molecular_function
GO:0052831	inositol-1,3,4,6-tetrakisphosphate 1-phosphatase activity	molecular_function
GO:0052832	inositol monophosphate 3-phosphatase activity	molecular_function
GO:0052833	inositol monophosphate 4-phosphatase activity	molecular_function
GO:0052834	inositol monophosphate phosphatase activity	molecular_function
GO:0052835	inositol-3,4,6-trisphosphate 1-kinase activity	molecular_function
GO:0052836	inositol 5-diphosphate pentakisphosphate 5-kinase activity	molecular_function
GO:0052837	thiazole biosynthetic process	biological_process
GO:0052838	thiazole metabolic process	biological_process
GO:0097195	pilomotor reflex	biological_process
GO:0097196	Shu complex	cellular_component
GO:0097197	tetraspanin-enriched microdomain	cellular_component
GO:2001201	regulation of transforming growth factor-beta secretion	biological_process
GO:2001202	negative regulation of transforming growth factor-beta secretion	biological_process
GO:2001203	positive regulation of transforming growth factor-beta secretion	biological_process
GO:2001204	regulation of osteoclast development	biological_process
GO:2001205	negative regulation of osteoclast development	biological_process
GO:2001206	positive regulation of osteoclast development	biological_process
GO:2001207	regulation of transcription elongation from RNA polymerase I promoter	biological_process
GO:2001208	negative regulation of transcription elongation from RNA polymerase I promoter	biological_process
GO:2001209	positive regulation of transcription elongation from RNA polymerase I promoter	biological_process
GO:2001210	regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway	biological_process
GO:2001211	negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway	biological_process
GO:2001212	regulation of vasculogenesis	biological_process
GO:2001213	negative regulation of vasculogenesis	biological_process
GO:2001214	positive regulation of vasculogenesis	biological_process
GO:2001215	regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	biological_process
GO:2001216	negative regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	biological_process
GO:2001217	regulation of S/G2 transition of mitotic cell cycle	biological_process
GO:2001218	negative regulation of S/G2 transition of mitotic cell cycle	biological_process
GO:2001219	positive regulation of S/G2 transition of mitotic cell cycle	biological_process
GO:2001220	negative regulation of G2 phase of mitotic cell cycle	biological_process
GO:2001221	positive regulation of G2 phase of mitotic cell cycle	biological_process
GO:2001222	regulation of neuron migration	biological_process
GO:2001223	negative regulation of neuron migration	biological_process
GO:2001224	positive regulation of neuron migration	biological_process
GO:2001225	regulation of chloride transport	biological_process
GO:2001226	negative regulation of chloride transport	biological_process
GO:2001228	regulation of response to gamma radiation	biological_process
GO:2001229	negative regulation of response to gamma radiation	biological_process
GO:2001230	positive regulation of response to gamma radiation	biological_process
GO:2001231	regulation of protein targeting to prospore membrane	biological_process
GO:2001232	positive regulation of protein targeting to prospore membrane	biological_process
GO:2001233	regulation of apoptotic signaling pathway	biological_process
GO:2001234	negative regulation of apoptotic signaling pathway	biological_process
GO:2001235	positive regulation of apoptotic signaling pathway	biological_process
GO:2001236	regulation of extrinsic apoptotic signaling pathway	biological_process
GO:2001237	negative regulation of extrinsic apoptotic signaling pathway	biological_process
GO:2001238	positive regulation of extrinsic apoptotic signaling pathway	biological_process
GO:2001239	regulation of extrinsic apoptotic signaling pathway in absence of ligand	biological_process
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	biological_process
GO:2001241	positive regulation of extrinsic apoptotic signaling pathway in absence of ligand	biological_process
GO:2001242	regulation of intrinsic apoptotic signaling pathway	biological_process
GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	biological_process
GO:2001244	positive regulation of intrinsic apoptotic signaling pathway	biological_process
GO:2001245	regulation of phosphatidylcholine biosynthetic process	biological_process
GO:2001246	negative regulation of phosphatidylcholine biosynthetic process	biological_process
GO:2001247	positive regulation of phosphatidylcholine biosynthetic process	biological_process
GO:2001248	regulation of ammonia assimilation cycle	biological_process
GO:2001249	negative regulation of ammonia assimilation cycle	biological_process
GO:2001250	positive regulation of ammonia assimilation cycle	biological_process
GO:2001251	negative regulation of chromosome organization	biological_process
GO:2001252	positive regulation of chromosome organization	biological_process


OBSOLETIONS
===========

None


TERM MERGES
===========

None


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	def	comment	synonym	xref	is_a	relationship	
GO:0000823	C	C		1 A				
GO:0000827	C							
GO:0000917	C			1 D, 1 A				
GO:0001202						1 D		
GO:0001311				1 A				
GO:0001313				1 A				
GO:0001325				1 A				
GO:0002752		C						
GO:0002753		C						
GO:0002754		C						
GO:0003014				1 A				
GO:0003707		C	C			1 D, 1 A		
GO:0003708		C	D					
GO:0004439				1 D				
GO:0004879	C	C	C	3 A		1 A		
GO:0004880		C	D					
GO:0004882		C	D			1 A		
GO:0004883		C	C					
GO:0004884		C	D			1 A		
GO:0004886	C	C		1 A				
GO:0004887		C	D					
GO:0008301	C	C		2 A				
GO:0008440	C			1 D, 1 A				
GO:0008934	C			6 D, 2 A	1 D, 1 A	1 D, 1 A		
GO:0010973	C			1 A				
GO:0010974	C			1 A				
GO:0016316				3 D				
GO:0016706						1 A		
GO:0017082		C	D	1 A		1 A		
GO:0030284		C	C				1 D	
GO:0030351						1 D, 1 A		
GO:0030487		C			1 A			
GO:0030518	C	C		1 D, 2 A				
GO:0030520	C	C		1 D, 2 A				
GO:0031057						1 D, 1 A		
GO:0031058						1 D, 1 A		
GO:0031321	C			1 A				
GO:0031445	C			1 A				
GO:0031452	C			1 A				
GO:0031453	C			1 A				
GO:0031454	C			1 A				
GO:0031507	C			1 D, 1 A				
GO:0031508	C			1 D, 1 A				
GO:0031509	C			1 D, 1 A				
GO:0031963		C	A					
GO:0032205						1 D, 1 A		
GO:0032206						1 D, 1 A		
GO:0032955	C			1 A				
GO:0033046						1 D, 1 A		
GO:0033143	C	C		1 D, 2 A				
GO:0033144	C	C		1 D, 2 A				
GO:0033145	C	C		1 D, 2 A				
GO:0033146	C	C		1 A				
GO:0033147	C	C		1 A				
GO:0033148	C	C		1 D, 2 A				
GO:0033696	C			1 A				
GO:0033697	C			1 A				
GO:0034597				1 D				
GO:0035964		C				1 D, 1 A		
GO:0035986	C			1 A				
GO:0045798						1 D, 1 A		
GO:0045799						1 D, 1 A		
GO:0045875						1 D, 1 A		
GO:0045876						1 D, 1 A		
GO:0052659	C							
GO:0060820	C			1 A				
GO:0070869	C			1 A				
GO:0070924	C			1 A				
GO:0071937	C			1 A				
GO:0090114		C						
GO:0090309						1 D, 1 A		
GO:0090310						1 D, 1 A		



OTHER STANZA TYPES
==================

Stanzas Edited
==============

Stanza type	ID	Name
Typedef	has_part	has_part
Typedef	part_of	part_of



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9148	9168	+20
	(9148 defined)	(9168 defined)	
cellular component	2924	2926	+2
	(2924 defined)	(2926 defined)	
biological process	21603	21659	+56
	(21603 defined)	(21659 defined)	

Obsolete	1603	1603	0
	(4.5% of total)	 (4.5% of total)	(0.0%)

Totals	33675	33753	+78 (+0.2%)
	33675 (100.0%) defined	33753 (100.0%) defined	
	35278 inc. obs	35356 inc. obs