Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-11-26.obo; date: 24:11:2011 22:03; CVS revision: 1.2403
  • file 2 (new): go-2011-12-03.obo; date: 02:12:2011 16:46; CVS revision: 1.2418

New terms

ID name namespace
GO:0038049 ligand-activated RNA polymerase II transcription factor binding transcription factor activity molecular_function
GO:0038050 glucocorticoid-activated sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function
GO:0038051 glucocorticoid-activated RNA polymerase II transcription factor binding transcription factor activity molecular_function
GO:0038052 estrogen-activated sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function
GO:0038053 estrogen-activated RNA polymerase II transcription factor binding transcription factor activity molecular_function
GO:0038054 G-protein coupled estrogen receptor activity molecular_function
GO:0044373 cytokinin binding molecular_function
GO:0044374 sequence-specific DNA binding, bending molecular_function
GO:0044375 regulation of peroxisome size biological_process
GO:0044376 RNA polymerase II complex localization to nucleus biological_process
GO:0052825 inositol-1,3,4,5,6-pentakisphosphate 1-phosphatase activity molecular_function
GO:0052826 inositol hexakisphosphate 2-phosphatase activity molecular_function
GO:0052827 inositol pentakisphosphate phosphatase activity molecular_function
GO:0052828 inositol-3,4-bisphosphate 4-phosphatase activity molecular_function
GO:0052829 inositol-1,3,4-trisphosphate 1-phosphatase activity molecular_function
GO:0052830 inositol-1,3,4,6-tetrakisphosphate 6-phosphatase activity molecular_function
GO:0052831 inositol-1,3,4,6-tetrakisphosphate 1-phosphatase activity molecular_function
GO:0052832 inositol monophosphate 3-phosphatase activity molecular_function
GO:0052833 inositol monophosphate 4-phosphatase activity molecular_function
GO:0052834 inositol monophosphate phosphatase activity molecular_function
GO:0052835 inositol-3,4,6-trisphosphate 1-kinase activity molecular_function
GO:0052836 inositol 5-diphosphate pentakisphosphate 5-kinase activity molecular_function
GO:0052837 thiazole biosynthetic process biological_process
GO:0052838 thiazole metabolic process biological_process
GO:0097195 pilomotor reflex biological_process
GO:0097196 Shu complex cellular_component
GO:0097197 tetraspanin-enriched microdomain cellular_component
GO:2001201 regulation of transforming growth factor-beta secretion biological_process
GO:2001202 negative regulation of transforming growth factor-beta secretion biological_process
GO:2001203 positive regulation of transforming growth factor-beta secretion biological_process
GO:2001204 regulation of osteoclast development biological_process
GO:2001205 negative regulation of osteoclast development biological_process
GO:2001206 positive regulation of osteoclast development biological_process
GO:2001207 regulation of transcription elongation from RNA polymerase I promoter biological_process
GO:2001208 negative regulation of transcription elongation from RNA polymerase I promoter biological_process
GO:2001209 positive regulation of transcription elongation from RNA polymerase I promoter biological_process
GO:2001210 regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway biological_process
GO:2001211 negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway biological_process
GO:2001212 regulation of vasculogenesis biological_process
GO:2001213 negative regulation of vasculogenesis biological_process
GO:2001214 positive regulation of vasculogenesis biological_process
GO:2001215 regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity biological_process
GO:2001216 negative regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity biological_process
GO:2001217 regulation of S/G2 transition of mitotic cell cycle biological_process
GO:2001218 negative regulation of S/G2 transition of mitotic cell cycle biological_process
GO:2001219 positive regulation of S/G2 transition of mitotic cell cycle biological_process
GO:2001220 negative regulation of G2 phase of mitotic cell cycle biological_process
GO:2001221 positive regulation of G2 phase of mitotic cell cycle biological_process
GO:2001222 regulation of neuron migration biological_process
GO:2001223 negative regulation of neuron migration biological_process
GO:2001224 positive regulation of neuron migration biological_process
GO:2001225 regulation of chloride transport biological_process
GO:2001226 negative regulation of chloride transport biological_process
GO:2001228 regulation of response to gamma radiation biological_process
GO:2001229 negative regulation of response to gamma radiation biological_process
GO:2001230 positive regulation of response to gamma radiation biological_process
GO:2001231 regulation of protein targeting to prospore membrane biological_process
GO:2001232 positive regulation of protein targeting to prospore membrane biological_process
GO:2001233 regulation of apoptotic signaling pathway biological_process
GO:2001234 negative regulation of apoptotic signaling pathway biological_process
GO:2001235 positive regulation of apoptotic signaling pathway biological_process
GO:2001236 regulation of extrinsic apoptotic signaling pathway biological_process
GO:2001237 negative regulation of extrinsic apoptotic signaling pathway biological_process
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway biological_process
GO:2001239 regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:2001241 positive regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:2001242 regulation of intrinsic apoptotic signaling pathway biological_process
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:2001244 positive regulation of intrinsic apoptotic signaling pathway biological_process
GO:2001245 regulation of phosphatidylcholine biosynthetic process biological_process
GO:2001246 negative regulation of phosphatidylcholine biosynthetic process biological_process
GO:2001247 positive regulation of phosphatidylcholine biosynthetic process biological_process
GO:2001248 regulation of ammonia assimilation cycle biological_process
GO:2001249 negative regulation of ammonia assimilation cycle biological_process
GO:2001250 positive regulation of ammonia assimilation cycle biological_process
GO:2001251 negative regulation of chromosome organization biological_process
GO:2001252 positive regulation of chromosome organization biological_process

Obsoletions

None

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment synonym xref is_a relationship
Term ID name def comment synonym xref is_a relationship
GO:0000823
inositol-1,4,5-trisphosphate 6-kinase activity		 C C 1 A
GO:0000827
inositol-1,3,4,5,6-pentakisphosphate kinase activity		 C
GO:0000917
barrier septum assembly		 C 1 D, 1 A
GO:0001202
copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity		 1 D
GO:0001311
formation of extrachromosomal circular rDNA by homologous recombination involved in replicative cell aging		 1 A
GO:0001313
formation of extrachromosomal circular DNA involved in replicative cell aging		 1 A
GO:0001325
formation of extrachromosomal circular DNA		 1 A
GO:0002752
cell surface pattern recognition receptor signaling pathway		 C
GO:0002753
cytoplasmic pattern recognition receptor signaling pathway		 C
GO:0002754
intracellular vesicle pattern recognition receptor signaling pathway		 C
GO:0003014
renal system process		 1 A
GO:0003707
steroid hormone receptor activity		 C C 1 D, 1 A
GO:0003708
retinoic acid receptor activity		 C D
GO:0004439
phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity		 1 D
GO:0004879
ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity		 C C C 3 A 1 A
GO:0004880
juvenile hormone receptor activity		 C D
GO:0004882
androgen receptor activity		 C D 1 A
GO:0004883
glucocorticoid receptor activity		 C C
GO:0004884
ecdysteroid hormone receptor activity		 C D 1 A
GO:0004886
9-cis retinoic acid receptor activity		 C C 1 A
GO:0004887
thyroid hormone receptor activity		 C D
GO:0008301
DNA binding, bending		 C C 2 A
GO:0008440
inositol-1,4,5-trisphosphate 3-kinase activity		 C 1 D, 1 A
GO:0008934
inositol monophosphate 1-phosphatase activity		 C 6 D, 2 A 1 D, 1 A 1 D, 1 A
GO:0010973
positive regulation of barrier septum assembly		 C 1 A
GO:0010974
negative regulation of barrier septum assembly		 C 1 A
GO:0016316
phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity		 3 D
GO:0016706
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors		 1 A
GO:0017082
mineralocorticoid receptor activity		 C D 1 A 1 A
GO:0030284
estrogen receptor activity		 C C 1 D
GO:0030351
inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity		 1 D, 1 A
GO:0030487
inositol-4,5-bisphosphate 5-phosphatase activity		 C 1 A
GO:0030518
intracellular steroid hormone receptor signaling pathway		 C C 1 D, 2 A
GO:0030520
intracellular estrogen receptor signaling pathway		 C C 1 D, 2 A
GO:0031057
negative regulation of histone modification		 1 D, 1 A
GO:0031058
positive regulation of histone modification		 1 D, 1 A
GO:0031321
ascospore-type prospore assembly		 C 1 A
GO:0031445
regulation of heterochromatin assembly		 C 1 A
GO:0031452
negative regulation of heterochromatin assembly		 C 1 A
GO:0031453
positive regulation of heterochromatin assembly		 C 1 A
GO:0031454
regulation of extent of heterochromatin assembly		 C 1 A
GO:0031507
heterochromatin assembly		 C 1 D, 1 A
GO:0031508
centromeric heterochromatin assembly		 C 1 D, 1 A
GO:0031509
telomeric heterochromatin assembly		 C 1 D, 1 A
GO:0031963
cortisol receptor activity		 C A
GO:0032205
negative regulation of telomere maintenance		 1 D, 1 A
GO:0032206
positive regulation of telomere maintenance		 1 D, 1 A
GO:0032955
regulation of barrier septum assembly		 C 1 A
GO:0033046
negative regulation of sister chromatid segregation		 1 D, 1 A
GO:0033143
regulation of intracellular steroid hormone receptor signaling pathway		 C C 1 D, 2 A
GO:0033144
negative regulation of intracellular steroid hormone receptor signaling pathway		 C C 1 D, 2 A
GO:0033145
positive regulation of intracellular steroid hormone receptor signaling pathway		 C C 1 D, 2 A
GO:0033146
regulation of intracellular estrogen receptor signaling pathway		 C C 1 A
GO:0033147
negative regulation of intracellular estrogen receptor signaling pathway		 C C 1 A
GO:0033148
positive regulation of intracellular estrogen receptor signaling pathway		 C C 1 D, 2 A
GO:0033696
negative regulation of extent of heterochromatin assembly		 C 1 A
GO:0033697
positive regulation of extent of heterochromatin assembly		 C 1 A
GO:0034597
phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity		 1 D
GO:0035964
COPI-coated vesicle budding		 C 1 D, 1 A
GO:0035986
senescence-associated heterochromatin focus assembly		 C 1 A
GO:0045798
negative regulation of chromatin assembly or disassembly		 1 D, 1 A
GO:0045799
positive regulation of chromatin assembly or disassembly		 1 D, 1 A
GO:0045875
negative regulation of sister chromatid cohesion		 1 D, 1 A
GO:0045876
positive regulation of sister chromatid cohesion		 1 D, 1 A
GO:0052659
inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity		 C
GO:0060820
inactivation of X chromosome by heterochromatin assembly		 C 1 A
GO:0070869
heterochromatin assembly involved in chromatin silencing		 C 1 A
GO:0070924
heterochromatin assembly involved in chromatin silencing by small RNA		 C 1 A
GO:0071937
barrier septum assembly involved in cell cycle cytokinesis		 C 1 A
GO:0090114
COPII-coated vesicle budding		 C
GO:0090309
positive regulation of methylation-dependent chromatin silencing		 1 D, 1 A
GO:0090310
negative regulation of methylation-dependent chromatin silencing		 1 D, 1 A

Other Stanza Types

Stanzas Edited

Stanza type ID name
Typedef has_part has_part
Typedef part_of part_of

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9148
9148 (100.0%) defined 		9168
9168 (100.0%) defined 		+20
cellular component 2924
2924 (100.0%) defined 		2926
2926 (100.0%) defined 		+2
biological process 21603
21603 (100.0%) defined 		21659
21659 (100.0%) defined 		+56
Obsolete 1603
(4.5% of total)		 1603
(4.5% of total)		 0 (0.0%)
Totals 33675
33675 (100.0%) defined
35278 inc. obsoletes 		33753
33753 (100.0%) defined
35356 inc. obsoletes 		+78 (+0.2%)

Ontology report info