Gene Ontology Ontology Comparison Report ========================== Files used: - file 1 (old): go-2011-11-26.obo; date: 24:11:2011 22:03; CVS revision: 1.2403 - file 2 (new): go-2011-12-03.obo; date: 02:12:2011 16:46; CVS revision: 1.2418 NEW TERMS ========= ID name namespace GO:0038049 ligand-activated RNA polymerase II transcription factor binding transcription factor activity molecular_function GO:0038050 glucocorticoid-activated sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function GO:0038051 glucocorticoid-activated RNA polymerase II transcription factor binding transcription factor activity molecular_function GO:0038052 estrogen-activated sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function GO:0038053 estrogen-activated RNA polymerase II transcription factor binding transcription factor activity molecular_function GO:0038054 G-protein coupled estrogen receptor activity molecular_function GO:0044373 cytokinin binding molecular_function GO:0044374 sequence-specific DNA binding, bending molecular_function GO:0044375 regulation of peroxisome size biological_process GO:0044376 RNA polymerase II complex localization to nucleus biological_process GO:0052825 inositol-1,3,4,5,6-pentakisphosphate 1-phosphatase activity molecular_function GO:0052826 inositol hexakisphosphate 2-phosphatase activity molecular_function GO:0052827 inositol pentakisphosphate phosphatase activity molecular_function GO:0052828 inositol-3,4-bisphosphate 4-phosphatase activity molecular_function GO:0052829 inositol-1,3,4-trisphosphate 1-phosphatase activity molecular_function GO:0052830 inositol-1,3,4,6-tetrakisphosphate 6-phosphatase activity molecular_function GO:0052831 inositol-1,3,4,6-tetrakisphosphate 1-phosphatase activity molecular_function GO:0052832 inositol monophosphate 3-phosphatase activity molecular_function GO:0052833 inositol monophosphate 4-phosphatase activity molecular_function GO:0052834 inositol monophosphate phosphatase activity molecular_function GO:0052835 inositol-3,4,6-trisphosphate 1-kinase activity molecular_function GO:0052836 inositol 5-diphosphate pentakisphosphate 5-kinase activity molecular_function GO:0052837 thiazole biosynthetic process biological_process GO:0052838 thiazole metabolic process biological_process GO:0097195 pilomotor reflex biological_process GO:0097196 Shu complex cellular_component GO:0097197 tetraspanin-enriched microdomain cellular_component GO:2001201 regulation of transforming growth factor-beta secretion biological_process GO:2001202 negative regulation of transforming growth factor-beta secretion biological_process GO:2001203 positive regulation of transforming growth factor-beta secretion biological_process GO:2001204 regulation of osteoclast development biological_process GO:2001205 negative regulation of osteoclast development biological_process GO:2001206 positive regulation of osteoclast development biological_process GO:2001207 regulation of transcription elongation from RNA polymerase I promoter biological_process GO:2001208 negative regulation of transcription elongation from RNA polymerase I promoter biological_process GO:2001209 positive regulation of transcription elongation from RNA polymerase I promoter biological_process GO:2001210 regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway biological_process GO:2001211 negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway biological_process GO:2001212 regulation of vasculogenesis biological_process GO:2001213 negative regulation of vasculogenesis biological_process GO:2001214 positive regulation of vasculogenesis biological_process GO:2001215 regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity biological_process GO:2001216 negative regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity biological_process GO:2001217 regulation of S/G2 transition of mitotic cell cycle biological_process GO:2001218 negative regulation of S/G2 transition of mitotic cell cycle biological_process GO:2001219 positive regulation of S/G2 transition of mitotic cell cycle biological_process GO:2001220 negative regulation of G2 phase of mitotic cell cycle biological_process GO:2001221 positive regulation of G2 phase of mitotic cell cycle biological_process GO:2001222 regulation of neuron migration biological_process GO:2001223 negative regulation of neuron migration biological_process GO:2001224 positive regulation of neuron migration biological_process GO:2001225 regulation of chloride transport biological_process GO:2001226 negative regulation of chloride transport biological_process GO:2001228 regulation of response to gamma radiation biological_process GO:2001229 negative regulation of response to gamma radiation biological_process GO:2001230 positive regulation of response to gamma radiation biological_process GO:2001231 regulation of protein targeting to prospore membrane biological_process GO:2001232 positive regulation of protein targeting to prospore membrane biological_process GO:2001233 regulation of apoptotic signaling pathway biological_process GO:2001234 negative regulation of apoptotic signaling pathway biological_process GO:2001235 positive regulation of apoptotic signaling pathway biological_process GO:2001236 regulation of extrinsic apoptotic signaling pathway biological_process GO:2001237 negative regulation of extrinsic apoptotic signaling pathway biological_process GO:2001238 positive regulation of extrinsic apoptotic signaling pathway biological_process GO:2001239 regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process GO:2001241 positive regulation of extrinsic apoptotic signaling pathway in absence of ligand biological_process GO:2001242 regulation of intrinsic apoptotic signaling pathway biological_process GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process GO:2001244 positive regulation of intrinsic apoptotic signaling pathway biological_process GO:2001245 regulation of phosphatidylcholine biosynthetic process biological_process GO:2001246 negative regulation of phosphatidylcholine biosynthetic process biological_process GO:2001247 positive regulation of phosphatidylcholine biosynthetic process biological_process GO:2001248 regulation of ammonia assimilation cycle biological_process GO:2001249 negative regulation of ammonia assimilation cycle biological_process GO:2001250 positive regulation of ammonia assimilation cycle biological_process GO:2001251 negative regulation of chromosome organization biological_process GO:2001252 positive regulation of chromosome organization biological_process OBSOLETIONS =========== None TERM MERGES =========== None TERM CHANGES ============ GO:0000823 : inositol-1,4,5-trisphosphate 6-kinase activity - name: inositol trisphosphate 6-kinase activity + name: inositol-1,4,5-trisphosphate 6-kinase activity - def: Catalysis of the reaction: D-myo-inositol (1,4,5)-trisphosphate + ATP = D-myo-inositol (1,4,5,6)-tetrakisphosphate + ADP + 2 H(+). + def: Catalysis of the reaction: D-myo-inositol 1,4,5-trisphosphate + ATP = D-myo-inositol 1,4,5,6-tetrakisphosphate + ADP + 2 H(+). + synonym: "inositol trisphosphate 6-kinase activity" BROAD [] GO:0000827 : inositol-1,3,4,5,6-pentakisphosphate kinase activity - name: inositol 1,3,4,5,6-pentakisphosphate kinase activity + name: inositol-1,3,4,5,6-pentakisphosphate kinase activity GO:0000917 : barrier septum assembly - name: barrier septum formation + name: barrier septum assembly - synonym: "barrier septum assembly" EXACT [GOC:mah] + synonym: "barrier septum formation" EXACT [GOC:mah] GO:0001202 : copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity - is_a: GO:0097077 GO:0001311 : formation of extrachromosomal circular rDNA by homologous recombination involved in replicative cell aging + synonym: "assembly of extrachromosomal circular rDNA by homologous recombination involved in replicative cell aging" RELATED [] GO:0001313 : formation of extrachromosomal circular DNA involved in replicative cell aging + synonym: "assembly of extrachromosomal circular DNA involved in replicative cell aging" EXACT [] GO:0001325 : formation of extrachromosomal circular DNA + synonym: "assembly of extrachromosomal circular DNA" EXACT [] GO:0002752 : cell surface pattern recognition receptor signaling pathway - def: Any series of molecular signals generated as a consequence of binding to a cell surface pattern recognition receptor (PRR). Such receptors bind for molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens. + def: Any series of molecular signals generated as a consequence of binding to a cell surface pattern recognition receptor (PRR). Such receptors bind molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens. GO:0002753 : cytoplasmic pattern recognition receptor signaling pathway - def: Any series of molecular signals generated as a consequence of binding to a pattern recognition receptor (PRR) located in the cytoplasm. Such receptors bind for molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens. + def: Any series of molecular signals generated as a consequence of binding to a pattern recognition receptor (PRR) located in the cytoplasm. Such receptors bind molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens. GO:0002754 : intracellular vesicle pattern recognition receptor signaling pathway - def: Any series of molecular signals generated as a consequence of binding to a pattern recognition receptor (PRR) located within the membrane of an intracellular vesicle such as an endosome or lysosome. Such receptors bind for molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens. + def: Any series of molecular signals generated as a consequence of binding to a pattern recognition receptor (PRR) located within the membrane of an intracellular vesicle such as an endosome or lysosome. Such receptors bind molecular patterns based on a repeating or polymeric structures, like those of polysaccharides or peptidoglycans, which are sometimes associated with potential pathogens. GO:0003014 : renal system process + synonym: "excretory system process" EXACT [] GO:0003707 : steroid hormone receptor activity - def: Combining with a steroid hormone to initiate a change in cell activity. + def: Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + comment: Some steroid hormone receptors reside in the plasma membrane and signal through second messengers or other intracellular signal transduction pathways. For steroid hormone receptors that act in the nucleus to regulate transcription, consider also annotating to the terms: ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity ; GO:0038049' or ligand-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038049'. - is_a: GO:0004879 + is_a: GO:0038023 GO:0003708 : retinoic acid receptor activity - def: Combining with retinoic acid to initiate a change in cell activity. Retinoic acid is one of the forms of vitamin A. + def: Combining with retinoic acid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA\npolymerase II. Retinoic acid is one of the forms of vitamin A. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. GO:0004439 : phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity - synonym: "inositol 1,4,5-triphosphate 5-phosphomonoesterase activity" EXACT [EC:3.1.3.36] GO:0004879 : ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity - name: ligand-dependent nuclear receptor activity + name: ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity - def: A ligand-dependent receptor found in the nucleus of the cell. + def: Combining with a signal and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + comment: GO:0004879 is intended for annotation of nuclear receptors that regulate transcription by binding directly to DNA. When the nuclear receptor functions by binding to other transcription factors or transcription factor complexes, consider instead annotating to 'ligand-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038049'. + synonym: "ligand-dependent nuclear receptor activity" RELATED [GOC:bf] + synonym: "nuclear receptor activity" RELATED [GOC:bf] + synonym: "ligand-dependent transcription factor activity" RELATED [GOC:bf] + is_a: GO:0000981 GO:0004880 : juvenile hormone receptor activity - def: Combining with juvenile hormone to initiate a change in cell activity. + def: Combining with juvenile hormone and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. GO:0004882 : androgen receptor activity - def: Combining with an androgen to initiate a change in cell activity. + def: Combining with an androgen and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + is_a: GO:0004879 GO:0004883 : glucocorticoid receptor activity - def: Combining with a glucocorticoid to initiate a change in cell activity. + def: Combining with a glucocorticoid and transmitting the signal within the cell trigger a change in cell activity or function. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + comment: If the mechanism by which a glucocorticoid receptor functions is known, consider instead annotating to the child terms 'glucocorticoid-activated sequence-specific DNA binding RNA polymerase II transcription factor activity ; GO:0038050' or 'glucocorticoid-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038051'. GO:0004884 : ecdysteroid hormone receptor activity - def: Combining with ecdysteroid hormone to initiate a change in cell activity. + def: Combining with an ecdysteroid hormone and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + is_a: GO:0004879 GO:0004886 : 9-cis retinoic acid receptor activity - name: retinoid-X receptor activity + name: 9-cis retinoic acid receptor activity - def: Combining with 9-cis retinoic acid to initiate a change in cell activity. + def: Combining with 9-cis retinoic acid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. + synonym: "retinoid-X receptor activity" EXACT [GOC:bf] GO:0004887 : thyroid hormone receptor activity - def: Combining with thyroid hormone to initiate a change in cell activity. + def: Combining with thyroid hormone and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. GO:0008301 : DNA binding, bending - name: DNA bending activity + name: DNA binding, bending - def: An activity that results in binding to DNA and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. + def: The activity of binding to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence. + synonym: "DNA bending activity" EXACT [] + synonym: "DNA bending involving DNA binding" EXACT [] GO:0008440 : inositol-1,4,5-trisphosphate 3-kinase activity - name: inositol trisphosphate 3-kinase activity + name: inositol-1,4,5-trisphosphate 3-kinase activity - synonym: "inositol 1,4,5-trisphosphate 3-kinase activity" EXACT [] + synonym: "inositol trisphosphate 3-kinase activity" EXACT [] GO:0008934 : inositol monophosphate 1-phosphatase activity - name: inositol monophosphate phosphatase activity + name: inositol monophosphate 1-phosphatase activity - synonym: "inositol phosphatase activity" BROAD [EC:3.1.3.25] - synonym: "myo-inositol-1(or 4)-monophosphatase activity" EXACT [] - synonym: "inositol-phosphate phosphatase activity" EXACT [EC:3.1.3.25] - synonym: "myo-inositol monophosphatase activity" BROAD [EC:3.1.3.25] - synonym: "myo-inositol-phosphate phosphohydrolase activity" EXACT [EC:3.1.3.25] - synonym: "myo-inositol-1(or 4)-phosphate phosphohydrolase activity" EXACT [EC:3.1.3.25] + synonym: "myo-inositol-1(or 4)-phosphate phosphohydrolase activity" BROAD [EC:3.1.3.25] + synonym: "myo-inositol-1(or 4)-monophosphatase activity" BROAD [] - xref: MetaCyc:MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN + xref: MetaCyc:RXN0-5408 - is_a: GO:0052745 + is_a: GO:0052834 GO:0010973 : positive regulation of barrier septum assembly - name: positive regulation of barrier septum formation + name: positive regulation of barrier septum assembly + synonym: "positive regulation of barrier septum formation" EXACT [] GO:0010974 : negative regulation of barrier septum assembly - name: negative regulation of barrier septum formation + name: negative regulation of barrier septum assembly + synonym: "negative regulation of barrier septum formation" EXACT [] GO:0016316 : phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity - synonym: "D-myo-inositol-3,4-bisphosphate 4-phosphohydrolase activity" EXACT [EC:3.1.3.66] - synonym: "inositol-3,4-bisphosphate 4-phosphatase activity" EXACT [] - synonym: "inositol-1,4,-bisphosphate 4-phosphatase activity" EXACT [] GO:0016706 : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors + is_a: GO:0051213 GO:0017082 : mineralocorticoid receptor activity - def: Combining with mineralocorticoid to initiate a change in cell activity. + def: Combining with a mineralocorticoid and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + synonym: "aldosterone receptor" NARROW [] + is_a: GO:0004879 GO:0030284 : estrogen receptor activity - def: Combining with estrogen to initiate a change in cell activity. + def: Combining with estrogen and transmitting the signal within the cell to trigger a change in cell activity or function. - comment: Note that this term represents a function and not a gene product. Consider also annotating to the molecular function term 'transcription regulator activity ; GO:0030528'. + comment: For estrogen receptors that function within the nucleus to modulate transcription, consider instead annotating to the child terms 'estrogen-activated sequence-specific DNA binding RNA polymerase II transcription factor activity ; GO:0038052' or 'estrogen-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038053'. - relationship: part_of GO:0030520 GO:0030351 : inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity - is_a: GO:0052745 + is_a: GO:0052827 GO:0030487 : inositol-4,5-bisphosphate 5-phosphatase activity - def: Catalysis of the removal of a phosphate group from the carbon-5 position of D-myo-inositol 4,5-bisphosphate. + def: Catalysis of the reaction: 1D-myo-inositol 4,5-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate. + xref: EC:3.1.3.- GO:0030518 : intracellular steroid hormone receptor signaling pathway - name: steroid hormone receptor signaling pathway + name: intracellular steroid hormone receptor signaling pathway - def: Any series of molecular signals generated as a consequence of a steroid hormone receptor binding to one of its physiological ligands. + def: A series of molecular signals generated as a consequence of a intracellular steroid hormone receptor binding to one of its physiological ligands. - synonym: "steroid hormone receptor signalling pathway" EXACT [] + synonym: "steroid hormone receptor signalling pathway" BROAD [GOC:bf] + synonym: "steroid hormone receptor signaling pathway" BROAD [GOC:bf] GO:0030520 : intracellular estrogen receptor signaling pathway - name: estrogen receptor signaling pathway + name: intracellular estrogen receptor signaling pathway - def: Any series of molecular signals generated as a consequence of an estrogen binding to its receptor. + def: Any series of molecular signals generated as a consequence of an intracellular estrogen receptor binding to one of its physiological ligands. The pathway begins with receptor-ligand binding, and ends with regulation of a downstream cellular process (e.g. transcription). - synonym: "estrogen receptor signalling pathway" EXACT [] + synonym: "estrogen receptor signaling pathway" BROAD [GOC:bf] + synonym: "estrogen receptor signalling pathway" BROAD [GOC:bf] GO:0031057 : negative regulation of histone modification - is_a: GO:0010639 + is_a: GO:2001251 GO:0031058 : positive regulation of histone modification - is_a: GO:0010638 + is_a: GO:2001252 GO:0031321 : ascospore-type prospore assembly - name: ascospore-type prospore formation + name: ascospore-type prospore assembly + synonym: "ascospore-type prospore formation" EXACT [] GO:0031445 : regulation of heterochromatin assembly - name: regulation of heterochromatin formation + name: regulation of heterochromatin assembly + synonym: "regulation of heterochromatin formation" EXACT [] GO:0031452 : negative regulation of heterochromatin assembly - name: negative regulation of heterochromatin formation + name: negative regulation of heterochromatin assembly + synonym: "negative regulation of heterochromatin formation" EXACT [] GO:0031453 : positive regulation of heterochromatin assembly - name: positive regulation of heterochromatin formation + name: positive regulation of heterochromatin assembly + synonym: "positive regulation of heterochromatin formation" EXACT [] GO:0031454 : regulation of extent of heterochromatin assembly - name: regulation of extent of heterochromatin formation + name: regulation of extent of heterochromatin assembly + synonym: "regulation of extent of heterochromatin formation" EXACT [] GO:0031507 : heterochromatin assembly - name: heterochromatin formation + name: heterochromatin assembly - synonym: "heterochromatin assembly" EXACT [] + synonym: "heterochromatin formation" EXACT [] GO:0031508 : centromeric heterochromatin assembly - name: centromeric heterochromatin formation + name: centromeric heterochromatin assembly - synonym: "centromeric heterochromatin assembly" EXACT [] + synonym: "centromeric heterochromatin formation" EXACT [] GO:0031509 : telomeric heterochromatin assembly - name: telomeric heterochromatin formation + name: telomeric heterochromatin assembly - synonym: "telomeric heterochromatin assembly" EXACT [] + synonym: "telomeric heterochromatin formation" EXACT [] GO:0031963 : cortisol receptor activity - def: Combining with cortisol to initiate a change in cell activity. + def: Combining with cortisol and transmitting the signal within the cell to trigger a change in cell activity or function. + comment: For cortisol receptors that act in the nucleus to regulate transcription, consider also annotating to the terms: ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity ; GO:0038049' or ligand-activated RNA polymerase II transcription factor binding transcription factor activity ; GO:0038049'. GO:0032205 : negative regulation of telomere maintenance - is_a: GO:0010639 + is_a: GO:2001251 GO:0032206 : positive regulation of telomere maintenance - is_a: GO:0010638 + is_a: GO:2001252 GO:0032955 : regulation of barrier septum assembly - name: regulation of barrier septum formation + name: regulation of barrier septum assembly + synonym: "regulation of barrier septum formation" EXACT [] GO:0033046 : negative regulation of sister chromatid segregation - is_a: GO:0010639 + is_a: GO:2001251 GO:0033143 : regulation of intracellular steroid hormone receptor signaling pathway - name: regulation of steroid hormone receptor signaling pathway + name: regulation of intracellular steroid hormone receptor signaling pathway - def: Any process that modulates the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway. + def: Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway. - synonym: "regulation of steroid hormone receptor signalling pathway" EXACT [] + synonym: "regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] + synonym: "regulation of steroid hormone receptor signalling pathway" BROAD [] GO:0033144 : negative regulation of intracellular steroid hormone receptor signaling pathway - name: negative regulation of steroid hormone receptor signaling pathway + name: negative regulation of intracellular steroid hormone receptor signaling pathway - def: Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway. + def: Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway. - synonym: "negative regulation of steroid hormone receptor signalling pathway" EXACT [] + synonym: "negative regulation of steroid hormone receptor signalling pathway" BROAD [GOC:bf] + synonym: "negative regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] GO:0033145 : positive regulation of intracellular steroid hormone receptor signaling pathway - name: positive regulation of steroid hormone receptor signaling pathway + name: positive regulation of intracellular steroid hormone receptor signaling pathway - def: Any process that activates or increases the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway. + def: Any process that activates or increases the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway. - synonym: "positive regulation of steroid hormone receptor signalling pathway" EXACT [] + synonym: "positive regulation of steroid hormone receptor signalling pathway" BROAD [] + synonym: "positive regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] GO:0033146 : regulation of intracellular estrogen receptor signaling pathway - name: regulation of estrogen receptor signaling pathway + name: regulation of intracellular estrogen receptor signaling pathway - def: Any process that modulates the frequency, rate or extent of the activity of an estrogen receptor signaling pathway. + def: Any process that modulates the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway. + synonym: "regulation of estrogen receptor signaling pathway" BROAD [GOC:bf] GO:0033147 : negative regulation of intracellular estrogen receptor signaling pathway - name: negative regulation of estrogen receptor signaling pathway + name: negative regulation of intracellular estrogen receptor signaling pathway - def: Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an estrogen receptor signaling pathway. + def: Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway. + synonym: "negative regulation of estrogen receptor signaling pathway" BROAD [GOC:bf] GO:0033148 : positive regulation of intracellular estrogen receptor signaling pathway - name: positive regulation of estrogen receptor signaling pathway + name: positive regulation of intracellular estrogen receptor signaling pathway - def: Any process that activates or increases the frequency, rate or extent of the activity of an estrogen receptor signaling pathway. + def: Any process that activates or increases the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway. - synonym: "positive regulation of estrogen receptor signalling pathway" EXACT [] + synonym: "positive regulation of estrogen receptor signaling pathway" BROAD [GOC:bf] + synonym: "positive regulation of estrogen receptor signalling pathway" BROAD [] GO:0033696 : negative regulation of extent of heterochromatin assembly - name: negative regulation of extent of heterochromatin formation + name: negative regulation of extent of heterochromatin assembly + synonym: "negative regulation of extent of heterochromatin formation" EXACT [] GO:0033697 : positive regulation of extent of heterochromatin assembly - name: positive regulation of extent of heterochromatin formation + name: positive regulation of extent of heterochromatin assembly + synonym: "positive regulation of extent of heterochromatin formation" EXACT [] GO:0034597 : phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity - synonym: "D-myo-inositol-4,5-bisphosphate 4-phosphohydrolase activity" EXACT [] GO:0035964 : COPI-coated vesicle budding - def: The evagination of a Golgi membrane, resulting in formation of a COPI vesicle. + def: The evagination of a Golgi membrane, resulting in formation of a COPI-coated vesicle. - is_a: GO:0006900 + is_a: GO:0048194 GO:0035986 : senescence-associated heterochromatin focus assembly - name: senescence-associated heterochromatin focus formation + name: senescence-associated heterochromatin focus assembly + synonym: "senescence-associated heterochromatin focus formation" EXACT [] GO:0045798 : negative regulation of chromatin assembly or disassembly - is_a: GO:0010639 + is_a: GO:2001251 GO:0045799 : positive regulation of chromatin assembly or disassembly - is_a: GO:0010638 + is_a: GO:2001252 GO:0045875 : negative regulation of sister chromatid cohesion - is_a: GO:0010639 + is_a: GO:2001251 GO:0045876 : positive regulation of sister chromatid cohesion - is_a: GO:0010638 + is_a: GO:2001252 GO:0052659 : inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity - name: inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity + name: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity GO:0060820 : inactivation of X chromosome by heterochromatin assembly - name: inactivation of X chromosome by heterochromatin formation + name: inactivation of X chromosome by heterochromatin assembly + synonym: "inactivation of X chromosome by heterochromatin formation" EXACT [] GO:0070869 : heterochromatin assembly involved in chromatin silencing - name: heterochromatin formation involved in chromatin silencing + name: heterochromatin assembly involved in chromatin silencing + synonym: "heterochromatin formation involved in chromatin silencing" EXACT [] GO:0070924 : heterochromatin assembly involved in chromatin silencing by small RNA - name: heterochromatin formation involved in chromatin silencing by small RNA + name: heterochromatin assembly involved in chromatin silencing by small RNA + synonym: "heterochromatin formation involved in chromatin silencing by small RNA" EXACT [] GO:0071937 : barrier septum assembly involved in cell cycle cytokinesis - name: barrier septum formation involved in cell cycle cytokinesis + name: barrier septum assembly involved in cell cycle cytokinesis + synonym: "barrier septum formation involved in cell cycle cytokinesis" EXACT [] GO:0090114 : COPII-coated vesicle budding - def: The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII vesicle. + def: The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII-coated vesicle. GO:0090309 : positive regulation of methylation-dependent chromatin silencing - is_a: GO:0010638 + is_a: GO:2001252 GO:0090310 : negative regulation of methylation-dependent chromatin silencing - is_a: GO:0010639 + is_a: GO:2001251 OTHER STANZA TYPES ================== Stanzas Edited ============== Stanza type ID Name Typedef has_part has_part Typedef part_of part_of FILE STATS ========== Term counts for the old and new files Ontology Old file New file Change molecular function 9148 9168 +20 (9148 defined) (9168 defined) cellular component 2924 2926 +2 (2924 defined) (2926 defined) biological process 21603 21659 +56 (21603 defined) (21659 defined) Obsolete 1603 1603 0 (4.5% of total) (4.5% of total) (0.0%) Totals 33675 33753 +78 (+0.2%) 33675 (100.0%) defined 33753 (100.0%) defined 35278 inc. obs 35356 inc. obs