Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-11-19.obo; date: 18:11:2011 17:55; CVS revision: 1.2388
  • file 2 (new): go-2011-11-26.obo; date: 24:11:2011 22:03; CVS revision: 1.2403

New terms

ID name namespace
GO:0001196 regulation of mating-type specific transcription from RNA polymerase II promoter biological_process
GO:0001197 positive regulation of mating-type specific transcription from RNA polymerase II promoter biological_process
GO:0001198 negative regulation of mating-type specific transcription from RNA polymerase II promoter biological_process
GO:0001199 metal ion regulated sequence-specific DNA binding RNA polymerase transcription factor activity molecular_function
GO:0001200 metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function
GO:0001201 metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function
GO:0001202 copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function
GO:0001203 zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity molecular_function
GO:0001204 metal ion regulated bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity molecular_function
GO:0036038 tectonic complex cellular_component
GO:0036039 curcumin metabolic process biological_process
GO:0036040 curcumin catabolic process biological_process
GO:0036041 long-chain fatty acid binding molecular_function
GO:0036042 long-chain fatty acyl-CoA molecular_function
GO:0097186 amelogenesis biological_process
GO:0097187 dentinogenesis biological_process
GO:0097188 dentin mineralization biological_process
GO:0097189 apoptotic body cellular_component
GO:0097190 apoptotic signaling pathway biological_process
GO:0097191 extrinsic apoptotic signaling pathway biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0097193 intrinsic apoptotic signaling pathway biological_process
GO:0097194 execution phase of apoptosis biological_process

Obsoletions

None

Term merges

Old ID Old name Merged into Merged term name
GO:0034619cellular chaperone-mediated protein complex assemblyGO:0051131chaperone-mediated protein complex assembly

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name alt_id def comment subset synonym is_a intersection_of relationship
Term ID name alt_id def comment subset synonym is_a intersection_of relationship
GO:0006351
transcription, DNA-dependent		 1 A
GO:0006366
transcription from RNA polymerase II promoter		 1 D
GO:0006636
unsaturated fatty acid biosynthetic process		 1 A
GO:0006915
apoptotic process		 C C 3 A
GO:0007165
signal transduction		 C
GO:0007166
cell surface receptor linked signaling pathway		 C
GO:0007186
G-protein coupled receptor signaling pathway		 C
GO:0007194
negative regulation of adenylate cyclase activity		 1 A
GO:0007532
regulation of mating-type specific transcription, DNA-dependent		 C C
GO:0008219
cell death		 C
GO:0012501
programmed cell death		 C 1 A
GO:0012507
ER to Golgi transport vesicle membrane		 1 A
GO:0012508
Golgi to ER transport vesicle membrane		 1 A
GO:0012509
inter-Golgi transport vesicle membrane		 1 A
GO:0012510
trans-Golgi network transport vesicle membrane		 1 A
GO:0015114
phosphate ion transmembrane transporter activity		 1 A
GO:0030133
transport vesicle		 1 A
GO:0030134
ER to Golgi transport vesicle		 1 A
GO:0030140
trans-Golgi network transport vesicle		 1 A
GO:0030141
secretory granule		 C
GO:0030142
Golgi to ER transport vesicle		 1 A
GO:0030143
inter-Golgi transport vesicle		 1 A
GO:0030175
filopodium		 1 D
GO:0030658
transport vesicle membrane		 1 A
GO:0031234
extrinsic to internal side of plasma membrane		 A
GO:0031931
TORC1 complex		 C 5 A
GO:0031932
TORC2 complex		 C 3 A
GO:0034505
tooth mineralization		 C
GO:0035727
lysophosphatidic acid binding		 1 D, 1 A
GO:0038023
signaling receptor activity		 C C
GO:0038035
G-protein coupled receptor signaling in absence of ligand		 1 A
GO:0042475
odontogenesis of dentin-containing tooth		 C C A 1 D, 1 A
GO:0042487
regulation of odontogenesis of dentin-containing tooth		 C 1 D, 1 A
GO:0042488
positive regulation of odontogenesis of dentin-containing tooth		 C 1 D, 1 A
GO:0042489
negative regulation of odontogenesis of dentin-containing tooth		 C 1 D, 1 A
GO:0042981
regulation of apoptotic process		 C C A 1 A
GO:0043065
positive regulation of apoptotic process		 C C A 1 A
GO:0043066
negative regulation of apoptotic process		 C C A 1 A
GO:0045762
positive regulation of adenylate cyclase activity		 1 A
GO:0045894
negative regulation of mating-type specific transcription, DNA-dependent		 C C
GO:0045895
positive regulation of mating-type specific transcription, DNA-dependent		 C C
GO:0046848
hydroxyapatite binding		 C
GO:0051131
chaperone-mediated protein complex assembly		 1 A 1 A
GO:0060199
clathrin sculpted glutamate transport vesicle		 1 A
GO:0060200
clathrin sculpted acetylcholine transport vesicle		 1 A
GO:0060201
clathrin sculpted acetylcholine transport vesicle membrane		 1 A
GO:0060202
clathrin sculpted acetylcholine transport vesicle lumen		 1 A
GO:0060203
clathrin sculpted glutamate transport vesicle membrane		 1 A
GO:0060204
clathrin sculpted glutamate transport vesicle lumen		 1 A
GO:0060640
positive regulation of dentin-containing tooth bud formation by mesenchymal-epithelial signaling		 C 1 A
GO:0060790
tooth placode formation		 C
GO:0061364
apoptotic process involved in luteolysis		 C C 1 A 2 A
GO:0070081
clathrin sculpted monoamine transport vesicle		 1 A
GO:0070082
clathrin sculpted monoamine transport vesicle lumen		 1 A
GO:0070083
clathrin sculpted monoamine transport vesicle membrane		 1 A
GO:0070166
enamel mineralization		 1 A
GO:0070319
Golgi to plasma membrane transport vesicle		 1 A
GO:0070381
endosome to plasma membrane transport vesicle		 1 A
GO:0070382
exocytic vesicle		 1 A
GO:0070468
dentin secretion		 C C 1 D, 1 A
GO:0070538
oleic acid binding		 1 D, 1 A
GO:0070539
linoleic acid binding		 1 D, 1 A
GO:0070540
stearic acid binding		 1 D, 1 A
GO:0071895
odontoblast differentiation		 C
GO:0090034
regulation of chaperone-mediated protein complex assembly		 C C 1 D, 1 A 1 D, 1 A
GO:0090035
positive regulation of chaperone-mediated protein complex assembly		 C C 1 D, 1 A 1 D, 1 A
GO:2001227
quercitrin binding

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9140
9140 (100.0%) defined 		9148
9148 (100.0%) defined 		+8
cellular component 2922
2922 (100.0%) defined 		2924
2924 (100.0%) defined 		+2
biological process 21591
21591 (100.0%) defined 		21603
21603 (100.0%) defined 		+12
Obsolete 1603
(4.5% of total)		 1603
(4.5% of total)		 0 (0.0%)
Totals 33653
33653 (100.0%) defined
35256 inc. obsoletes 		33675
33675 (100.0%) defined
35278 inc. obsoletes 		+22 (+0.1%)

Ontology report info