Gene Ontology Ontology Comparison Report ========================== Files used: - file 1 (old): go-2011-10-08.obo; date: 07:10:2011 17:16; CVS revision: 1.2307 - file 2 (new): go-2011-10-15.obo; date: 14:10:2011 16:31; CVS revision: 1.2327 NEW TERMS ========= ID name namespace GO:0036012 cyanelle inner membrane cellular_component GO:0036013 cyanelle outer membrane cellular_component GO:0036014 cyanelle intermembrane space cellular_component GO:0036015 response to interleukin-3 biological_process GO:0036016 cellular response to interleukin-3 biological_process GO:0036017 response to erythropoietin biological_process GO:0036018 cellular response to erythropoietin biological_process GO:0036019 endolysosome cellular_component GO:0036020 endolysosome membrane cellular_component GO:0036021 endolysosome lumen cellular_component GO:0036022 limb joint morphogenesis biological_process GO:0036023 embryonic skeletal limb joint morphogenesis biological_process GO:0097176 epoxide metabolic process biological_process GO:0097177 mitochondrial ribosome binding molecular_function GO:2001115 methanopterin metabolic process biological_process GO:2001116 methanopterin biosynthetic process biological_process GO:2001117 tetrahydromethanopterin metabolic process biological_process GO:2001118 tetrahydromethanopterin biosynthetic process biological_process GO:2001119 methanofuran metabolic process biological_process GO:2001120 methanofuran biosynthetic process biological_process GO:2001121 coenzyme gamma-F420-2 biosynthetic process biological_process GO:2001122 maltoheptaose metabolic process biological_process GO:2001123 maltoheptaose catabolic process biological_process GO:2001124 regulation of translational frameshifting biological_process GO:2001125 negative regulation of translational frameshifting biological_process GO:2001126 positive regulation of translational frameshifting biological_process GO:2001127 methane biosynthetic process from formic acid biological_process GO:2001128 methane biosynthetic process from methylamine biological_process GO:2001129 methane biosynthetic process from dimethylamine biological_process GO:2001130 methane biosynthetic process from trimethylamine biological_process GO:2001131 methane biosynthetic process from dimethyl sulfide biological_process GO:2001132 methane biosynthetic process from 3-(methylthio)propionic acid biological_process GO:2001133 methane biosynthetic process from methanethiol biological_process GO:2001134 methane biosynthetic process from carbon monoxide biological_process GO:2001135 regulation of endocytic recycling biological_process GO:2001136 negative regulation of endocytic recycling biological_process GO:2001137 positive regulation of endocytic recycling biological_process GO:2001138 regulation of phospholipid transport biological_process GO:2001139 negative regulation of phospholipid transport biological_process GO:2001140 positive regulation of phospholipid transport biological_process OBSOLETIONS =========== None TERM MERGES =========== None TERM CHANGES ============ GO:0000981 : sequence-specific DNA binding RNA polymerase II transcription factor activity + relationship: part_of GO:0006357 GO:0000982 : RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity - relationship: part_of GO:0006357 GO:0000988 : protein binding transcription factor activity + relationship: part_of GO:0006355 GO:0001007 : RNA polymerase III transcription factor binding transcription factor activity + relationship: part_of GO:0006359 GO:0001034 : sequence-specific DNA binding RNA polymerase III transcription factor activity + relationship: part_of GO:0006359 GO:0001076 : RNA polymerase II transcription factor binding transcription factor activity + relationship: part_of GO:0006357 GO:0001082 : RNA polymerase I transcription factor binding transcription factor activity + relationship: part_of GO:0006356 GO:0001167 : sequence-specific DNA binding RNA polymerase I transcription factor activity + relationship: part_of GO:0006356 GO:0003700 : sequence-specific DNA binding transcription factor activity - relationship: part_of GO:0006351 GO:0004900 : erythropoietin receptor activity + relationship: part_of GO:0036018 GO:0004912 : interleukin-3 receptor activity + relationship: part_of GO:0036016 GO:0006434 : seryl-tRNA aminoacylation + relationship: has_part GO:0097056 GO:0006452 : translational frameshifting - is_a: GO:0006417 + is_a: GO:0006414 GO:0006915 : apoptosis GO:0009842 : cyanelle - def: A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a peptidoglycan layer as well as a double membrane. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid. + def: A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a double membrane with a peptidoglycan layer in the intermembrane space between the two envelope membranes. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid. GO:0032488 : Cdc42 protein signal transduction GO:0035111 : leg joint morphogenesis + is_a: GO:0036022 GO:0038025 : reelin receptor activity GO:0039503 : suppression by virus of host innate immune response - name: suppression by virus of host innate immunity + name: suppression by virus of host innate immune response + synonym: "suppression by virus of host innate immunity" EXACT [GOC:pg] GO:0043021 : ribonucleoprotein complex binding - name: ribonucleoprotein binding + name: ribonucleoprotein complex binding + synonym: "ribonucleoprotein binding" EXACT [GOC:bf, GOC:vk] + synonym: "protein-RNA complex binding" EXACT [GOC:bf, GOC:vk] GO:0045087 : innate immune response + synonym: "innate immunity" EXACT [GOC:pg] GO:0052033 : pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response - name: pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity + name: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response + synonym: "pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity" EXACT [GOC:pg] GO:0052034 : negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immune response - name: negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immunity + name: negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immune response + synonym: "negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immunity" EXACT [GOC:pg] GO:0052157 : modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response - name: modulation by symbiont of microbe-associated molecular pattern-induced host innate immunity + name: modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response + synonym: "modulation by symbiont of microbe-associated molecular pattern-induced host innate immunity" EXACT [GOC:pg] GO:0052166 : positive regulation by symbiont of host innate immune response - name: positive regulation by symbiont of host innate immunity + name: positive regulation by symbiont of host innate immune response + synonym: "positive regulation by symbiont of host innate immunity" EXACT [GOC:pg] GO:0052167 : modulation by symbiont of host innate immune response - name: modulation by symbiont of host innate immunity + name: modulation by symbiont of host innate immune response + synonym: "modulation by symbiont of host innate immunity" EXACT [GOC:pg] GO:0052169 : pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response - name: pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity + name: pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response + synonym: "pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity" EXACT [GOC:pg] GO:0052170 : negative regulation by symbiont of host innate immune response - name: negative regulation by symbiont of host innate immunity + name: negative regulation by symbiont of host innate immune response + synonym: "negative regulation by symbiont of host innate immunity" EXACT [GOC:pg] GO:0052257 : pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction - name: pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction + name: pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction + synonym: "pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction" EXACT [GOC:pg] GO:0052258 : negative regulation by organism of pathogen-associated molecular pattern-induced innate immune response of other organism involved in symbiotic interaction - name: negative regulation by organism of pathogen-associated molecular pattern-induced innate immunity of other organism involved in symbiotic interaction + name: negative regulation by organism of pathogen-associated molecular pattern-induced innate immune response of other organism involved in symbiotic interaction + synonym: "negative regulation by organism of pathogen-associated molecular pattern-induced innate immunity of other organism involved in symbiotic interaction" EXACT [GOC:pg] GO:0052296 : modulation by organism of microbe-associated molecular pattern-induced innate immune response in other organism involved in symbiotic interaction - name: modulation by organism of microbe-associated molecular pattern-induced innate immunity in other organism involved in symbiotic interaction + name: modulation by organism of microbe-associated molecular pattern-induced innate immune response in other organism involved in symbiotic interaction + synonym: "modulation by organism of microbe-associated molecular pattern-induced innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:pg] GO:0052305 : positive regulation by organism of innate immune response in other organism involved in symbiotic interaction - name: positive regulation by organism of innate immunity in other organism involved in symbiotic interaction + name: positive regulation by organism of innate immune response in other organism involved in symbiotic interaction + synonym: "positive regulation by organism of innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:pg] GO:0052306 : modulation by organism of innate immune response in other organism involved in symbiotic interaction - name: modulation by organism of innate immunity in other organism involved in symbiotic interaction + name: modulation by organism of innate immune response in other organism involved in symbiotic interaction - synonym: "modulation by organism of innate immunity in other organism involved in symbiotic interaction" RELATED [GOC:dph] + synonym: "modulation by organism of innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:dph, GOC:pg] GO:0052308 : pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction - name: pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction + name: pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction + synonym: "pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:pg] GO:0052309 : negative regulation by organism of innate immune response in other organism involved in symbiotic interaction - name: negative regulation by organism of innate immunity in other organism involved in symbiotic interaction + name: negative regulation by organism of innate immune response in other organism involved in symbiotic interaction GO:0052382 : induction by organism of innate immune response in other organism involved in symbiotic interaction - name: induction by organism of innate immunity in other organism involved in symbiotic interaction + name: induction by organism of innate immune response in other organism involved in symbiotic interaction - synonym: "induction by organism of innate immunity in other organism during symbiotic interaction" RELATED [GOC:dph] - synonym: "induction by organism of innate immune response in other organism involved in symbiotic interaction" EXACT [] + synonym: "induction by organism of innate immunity in other organism during symbiotic interaction" RELATED [GOC:dph, GOC:pg] GO:0052390 : induction by symbiont of host innate immune response - name: induction by symbiont of host innate immunity + name: induction by symbiont of host innate immune response + synonym: "induction by symbiont of host innate immunity" EXACT [GOC:pg] GO:0052763 : ulvan lyase activity - def: Catalysis of the cleavage of a carbon-oxygen bond in ulvan, a carbohydrate composed of a repeating structure of [->4)-beta-D-GlcA-(1,4)-alpha-L-Rha 3S-(1,4)-alpha-L-IdoA-(1,4)-alpha-L-Rha 3S-(1->]n. Continued digest of ulvan with an enzyme that can catalyse this reaction results in ulvanobiouronic acid A 3-sulfate [->4)-beta-D-GlcpA-(1,4)-alpha-L-Rhap 3-sulfate-(1->]n with 4-deoxy-L-threo-hex-4-enopyranosiduronic acid at the non-reducing end. + def: Catalysis of the cleavage of a carbon-oxygen bond in ulvan, a carbohydrate composed of a repeating structure of [->4)-beta-D-GlcA-(1,4)-alpha-L-Rha 3S-(1,4)-alpha-L-IdoA-(1,4)-alpha-L-Rha 3S-(1->]n. Continued digest of ulvan with an enzyme that can catalyze this reaction results in ulvanobiouronic acid A 3-sulfate [->4)-beta-D-GlcpA-(1,4)-alpha-L-Rhap 3-sulfate-(1->]n with 4-deoxy-L-threo-hex-4-enopyranosiduronic acid at the non-reducing end. GO:0052799 : coenzyme F420-dependent bicyclic nitroimidazole catabolic process - namespace: molecular_function + namespace: biological_process GO:0052800 : bicyclic nitroimidazole catabolic process - namespace: molecular_function + namespace: biological_process GO:0052801 : bicyclic nitroimidazole metabolic process - namespace: molecular_function + namespace: biological_process GO:0052802 : nitroimidazole metabolic process - namespace: molecular_function + namespace: biological_process GO:0052803 : imidazole metabolic process - namespace: molecular_function + namespace: biological_process GO:0052804 : nitroimidazole catabolic process - namespace: molecular_function + namespace: biological_process GO:0052805 : imidazole catabolic process - namespace: molecular_function + namespace: biological_process GO:0060272 : embryonic skeletal joint morphogenesis - def: The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A joint is the connecting structure between the bones of the skeleton. + def: The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A skeletal joint is the connecting structure between the bones of the skeleton. GO:0061091 : regulation of phospholipid translocation - is_a: GO:0032368 + is_a: GO:2001138 GO:0061092 : positive regulation of phospholipid translocation - is_a: GO:0032370 + is_a: GO:2001140 GO:0061093 : negative regulation of phospholipid translocation - is_a: GO:0032369 + is_a: GO:2001139 GO:0071889 : 14-3-3 protein binding GO:0097056 : selenocysteinyl-tRNA(Sec) biosynthetic process - def: The chemical reactions and pathways by which the amino acid selenocysteine is paired with its cognate tRNA to form selenocysteinyl-tRNA(Sec). + def: The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine. - is_a: GO:0043039 + is_a: GO:0006399 FILE STATS ========== Term counts for the old and new files Ontology Old file New file Change molecular function 9147 9141 -6 (9147 defined) (9141 defined) cellular component 2900 2906 +6 (2900 defined) (2906 defined) biological process 21464 21504 +40 (21464 defined) (21504 defined) Obsolete 1587 1587 0 (4.5% of total) (4.5% of total) (0.0%) Totals 33511 33551 +40 (+0.1%) 33511 (100.0%) defined 33551 (100.0%) defined 35098 inc. obs 35138 inc. obs