Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-10-08.obo; date: 07:10:2011 17:16; CVS revision: 1.2307
  • file 2 (new): go-2011-10-15.obo; date: 14:10:2011 16:31; CVS revision: 1.2327

New terms

ID name namespace
GO:0036012 cyanelle inner membrane cellular_component
GO:0036013 cyanelle outer membrane cellular_component
GO:0036014 cyanelle intermembrane space cellular_component
GO:0036015 response to interleukin-3 biological_process
GO:0036016 cellular response to interleukin-3 biological_process
GO:0036017 response to erythropoietin biological_process
GO:0036018 cellular response to erythropoietin biological_process
GO:0036019 endolysosome cellular_component
GO:0036020 endolysosome membrane cellular_component
GO:0036021 endolysosome lumen cellular_component
GO:0036022 limb joint morphogenesis biological_process
GO:0036023 embryonic skeletal limb joint morphogenesis biological_process
GO:0097176 epoxide metabolic process biological_process
GO:0097177 mitochondrial ribosome binding molecular_function
GO:2001115 methanopterin metabolic process biological_process
GO:2001116 methanopterin biosynthetic process biological_process
GO:2001117 tetrahydromethanopterin metabolic process biological_process
GO:2001118 tetrahydromethanopterin biosynthetic process biological_process
GO:2001119 methanofuran metabolic process biological_process
GO:2001120 methanofuran biosynthetic process biological_process
GO:2001121 coenzyme gamma-F420-2 biosynthetic process biological_process
GO:2001122 maltoheptaose metabolic process biological_process
GO:2001123 maltoheptaose catabolic process biological_process
GO:2001124 regulation of translational frameshifting biological_process
GO:2001125 negative regulation of translational frameshifting biological_process
GO:2001126 positive regulation of translational frameshifting biological_process
GO:2001127 methane biosynthetic process from formic acid biological_process
GO:2001128 methane biosynthetic process from methylamine biological_process
GO:2001129 methane biosynthetic process from dimethylamine biological_process
GO:2001130 methane biosynthetic process from trimethylamine biological_process
GO:2001131 methane biosynthetic process from dimethyl sulfide biological_process
GO:2001132 methane biosynthetic process from 3-(methylthio)propionic acid biological_process
GO:2001133 methane biosynthetic process from methanethiol biological_process
GO:2001134 methane biosynthetic process from carbon monoxide biological_process
GO:2001135 regulation of endocytic recycling biological_process
GO:2001136 negative regulation of endocytic recycling biological_process
GO:2001137 positive regulation of endocytic recycling biological_process
GO:2001138 regulation of phospholipid transport biological_process
GO:2001139 negative regulation of phospholipid transport biological_process
GO:2001140 positive regulation of phospholipid transport biological_process

Obsoletions

None

Term merges

None

Term changes

Changes in term-related data
File 1 (07:10:2011 17:16, 1.2307) File 2 (14:10:2011 16:31, 1.2327)
GO:0000981 : sequence-specific DNA binding RNA polymerase II transcription factor activity
relationship
part_of GO:0006357
GO:0000982 : RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
relationship
part_of GO:0006357
GO:0000988 : protein binding transcription factor activity
relationship
part_of GO:0006355
GO:0001007 : RNA polymerase III transcription factor binding transcription factor activity
relationship
part_of GO:0006359
GO:0001034 : sequence-specific DNA binding RNA polymerase III transcription factor activity
relationship
part_of GO:0006359
GO:0001076 : RNA polymerase II transcription factor binding transcription factor activity
relationship
part_of GO:0006357
GO:0001082 : RNA polymerase I transcription factor binding transcription factor activity
relationship
part_of GO:0006356
GO:0001167 : sequence-specific DNA binding RNA polymerase I transcription factor activity
relationship
part_of GO:0006356
GO:0003700 : sequence-specific DNA binding transcription factor activity
relationship
part_of GO:0006351
GO:0004900 : erythropoietin receptor activity
relationship
part_of GO:0036018
GO:0004912 : interleukin-3 receptor activity
relationship
part_of GO:0036016
GO:0006434 : seryl-tRNA aminoacylation
relationship
has_part GO:0097056
GO:0006452 : translational frameshifting
is_a
GO:0006417
 is_a
GO:0006414
GO:0006915 : apoptosis
GO:0009842 : cyanelle
def
A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a peptidoglycan layer as well as a double membrane. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid.
 def
A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a double membrane with a peptidoglycan layer in the intermembrane space between the two envelope membranes. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid.
GO:0032488 : Cdc42 protein signal transduction
GO:0035111 : leg joint morphogenesis
is_a
GO:0036022
GO:0038025 : reelin receptor activity
GO:0039503 : suppression by virus of host innate immune response
name
suppression by virus of host innate immunity
 name
suppression by virus of host innate immune response
synonym
"suppression by virus of host innate immunity" EXACT [GOC:pg]
GO:0043021 : ribonucleoprotein complex binding
name
ribonucleoprotein binding
 name
ribonucleoprotein complex binding
synonym
"protein-RNA complex binding" EXACT [GOC:bf, GOC:vk]
"ribonucleoprotein binding" EXACT [GOC:bf, GOC:vk]
GO:0045087 : innate immune response
synonym
"innate immunity" EXACT [GOC:pg]
GO:0052033 : pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
name
pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity
 name
pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
synonym
"pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity" EXACT [GOC:pg]
GO:0052034 : negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immune response
name
negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immunity
 name
negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immune response
synonym
"negative regulation by symbiont of microbe-associated molecular pattern-induced host innate immunity" EXACT [GOC:pg]
GO:0052157 : modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response
name
modulation by symbiont of microbe-associated molecular pattern-induced host innate immunity
 name
modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response
synonym
"modulation by symbiont of microbe-associated molecular pattern-induced host innate immunity" EXACT [GOC:pg]
GO:0052166 : positive regulation by symbiont of host innate immune response
name
positive regulation by symbiont of host innate immunity
 name
positive regulation by symbiont of host innate immune response
synonym
"positive regulation by symbiont of host innate immunity" EXACT [GOC:pg]
GO:0052167 : modulation by symbiont of host innate immune response
name
modulation by symbiont of host innate immunity
 name
modulation by symbiont of host innate immune response
synonym
"modulation by symbiont of host innate immunity" EXACT [GOC:pg]
GO:0052169 : pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response
name
pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity
 name
pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response
synonym
"pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity" EXACT [GOC:pg]
GO:0052170 : negative regulation by symbiont of host innate immune response
name
negative regulation by symbiont of host innate immunity
 name
negative regulation by symbiont of host innate immune response
synonym
"negative regulation by symbiont of host innate immunity" EXACT [GOC:pg]
GO:0052257 : pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction
name
pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction
 name
pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction
synonym
"pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction" EXACT [GOC:pg]
GO:0052258 : negative regulation by organism of pathogen-associated molecular pattern-induced innate immune response of other organism involved in symbiotic interaction
name
negative regulation by organism of pathogen-associated molecular pattern-induced innate immunity of other organism involved in symbiotic interaction
 name
negative regulation by organism of pathogen-associated molecular pattern-induced innate immune response of other organism involved in symbiotic interaction
synonym
"negative regulation by organism of pathogen-associated molecular pattern-induced innate immunity of other organism involved in symbiotic interaction" EXACT [GOC:pg]
GO:0052296 : modulation by organism of microbe-associated molecular pattern-induced innate immune response in other organism involved in symbiotic interaction
name
modulation by organism of microbe-associated molecular pattern-induced innate immunity in other organism involved in symbiotic interaction
 name
modulation by organism of microbe-associated molecular pattern-induced innate immune response in other organism involved in symbiotic interaction
synonym
"modulation by organism of microbe-associated molecular pattern-induced innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:pg]
GO:0052305 : positive regulation by organism of innate immune response in other organism involved in symbiotic interaction
name
positive regulation by organism of innate immunity in other organism involved in symbiotic interaction
 name
positive regulation by organism of innate immune response in other organism involved in symbiotic interaction
synonym
"positive regulation by organism of innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:pg]
GO:0052306 : modulation by organism of innate immune response in other organism involved in symbiotic interaction
name
modulation by organism of innate immunity in other organism involved in symbiotic interaction
synonym
"modulation by organism of innate immunity in other organism involved in symbiotic interaction" RELATED [GOC:dph]
 name
modulation by organism of innate immune response in other organism involved in symbiotic interaction
synonym
"modulation by organism of innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:dph, GOC:pg]
GO:0052308 : pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction
name
pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction
 name
pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction
synonym
"pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction" EXACT [GOC:pg]
GO:0052309 : negative regulation by organism of innate immune response in other organism involved in symbiotic interaction
name
negative regulation by organism of innate immunity in other organism involved in symbiotic interaction
 name
negative regulation by organism of innate immune response in other organism involved in symbiotic interaction
GO:0052382 : induction by organism of innate immune response in other organism involved in symbiotic interaction
name
induction by organism of innate immunity in other organism involved in symbiotic interaction
synonym
"induction by organism of innate immune response in other organism involved in symbiotic interaction" EXACT []
"induction by organism of innate immunity in other organism during symbiotic interaction" RELATED [GOC:dph]
 name
induction by organism of innate immune response in other organism involved in symbiotic interaction
synonym
"induction by organism of innate immunity in other organism during symbiotic interaction" RELATED [GOC:dph, GOC:pg]
GO:0052390 : induction by symbiont of host innate immune response
name
induction by symbiont of host innate immunity
 name
induction by symbiont of host innate immune response
synonym
"induction by symbiont of host innate immunity" EXACT [GOC:pg]
GO:0052763 : ulvan lyase activity
def
Catalysis of the cleavage of a carbon-oxygen bond in ulvan, a carbohydrate composed of a repeating structure of [->4)-beta-D-GlcA-(1,4)-alpha-L-Rha 3S-(1,4)-alpha-L-IdoA-(1,4)-alpha-L-Rha 3S-(1->]n. Continued digest of ulvan with an enzyme that can catalyse this reaction results in ulvanobiouronic acid A 3-sulfate [->4)-beta-D-GlcpA-(1,4)-alpha-L-Rhap 3-sulfate-(1->]n with 4-deoxy-L-threo-hex-4-enopyranosiduronic acid at the non-reducing end.
 def
Catalysis of the cleavage of a carbon-oxygen bond in ulvan, a carbohydrate composed of a repeating structure of [->4)-beta-D-GlcA-(1,4)-alpha-L-Rha 3S-(1,4)-alpha-L-IdoA-(1,4)-alpha-L-Rha 3S-(1->]n. Continued digest of ulvan with an enzyme that can catalyze this reaction results in ulvanobiouronic acid A 3-sulfate [->4)-beta-D-GlcpA-(1,4)-alpha-L-Rhap 3-sulfate-(1->]n with 4-deoxy-L-threo-hex-4-enopyranosiduronic acid at the non-reducing end.
GO:0052799 : coenzyme F420-dependent bicyclic nitroimidazole catabolic process
namespace
molecular_function
 namespace
biological_process
GO:0052800 : bicyclic nitroimidazole catabolic process
namespace
molecular_function
 namespace
biological_process
GO:0052801 : bicyclic nitroimidazole metabolic process
namespace
molecular_function
 namespace
biological_process
GO:0052802 : nitroimidazole metabolic process
namespace
molecular_function
 namespace
biological_process
GO:0052803 : imidazole metabolic process
namespace
molecular_function
 namespace
biological_process
GO:0052804 : nitroimidazole catabolic process
namespace
molecular_function
 namespace
biological_process
GO:0052805 : imidazole catabolic process
namespace
molecular_function
 namespace
biological_process
GO:0060272 : embryonic skeletal joint morphogenesis
def
The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A joint is the connecting structure between the bones of the skeleton.
 def
The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A skeletal joint is the connecting structure between the bones of the skeleton.
GO:0061091 : regulation of phospholipid translocation
is_a
GO:0032368
 is_a
GO:2001138
GO:0061092 : positive regulation of phospholipid translocation
is_a
GO:0032370
 is_a
GO:2001140
GO:0061093 : negative regulation of phospholipid translocation
is_a
GO:0032369
 is_a
GO:2001139
GO:0071889 : 14-3-3 protein binding
GO:0097056 : selenocysteinyl-tRNA(Sec) biosynthetic process
def
The chemical reactions and pathways by which the amino acid selenocysteine is paired with its cognate tRNA to form selenocysteinyl-tRNA(Sec).
is_a
GO:0043039
 def
The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine.
is_a
GO:0006399

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9147
9147 (100.0%) defined 		9141
9141 (100.0%) defined 		-6
cellular component 2900
2900 (100.0%) defined 		2906
2906 (100.0%) defined 		+6
biological process 21464
21464 (100.0%) defined 		21504
21504 (100.0%) defined 		+40
Obsolete 1587
(4.5% of total)		 1587
(4.5% of total)		 0 (0.0%)
Totals 33511
33511 (100.0%) defined
35098 inc. obsoletes 		33551
33551 (100.0%) defined
35138 inc. obsoletes 		+40 (+0.1%)

Ontology report info