Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-09-17.obo; date: 16:09:2011 13:48; CVS revision: 1.2262
  • file 2 (new): go-2011-09-24.obo; date: 23:09:2011 13:54; CVS revision: 1.2279

New terms

ID name namespace
GO:0036003 positive regulation of transcription from RNA polymerase II promoter in response to stress biological_process
GO:0036004 GAF domain binding molecular_function
GO:0036005 response to macrophage colony-stimulating factor stimulus biological_process
GO:0036006 cellular response to macrophage colony-stimulating factor stimulus biological_process
GO:0036007 scintillon cellular_component
GO:0036008 sucrose catabolic process to fructose-6-phosphate and glucose-6-phosphate biological_process
GO:0038033 vascular endothelial growth factor receptor signaling pathway involved in endothelial cell chemotaxis biological_process
GO:0052747 sinapyl alcohol dehydrogenase activity molecular_function
GO:0052748 baicalin beta-D-glucuronidase activity molecular_function
GO:0052749 glucose-6-phosphate dehydrogenase (coenzyme F420) activity molecular_function
GO:0052750 reactive-black-5:hydrogen-peroxide oxidoreductase activity molecular_function
GO:0052751 GDP-mannose hydrolase activity molecular_function
GO:0052752 reduced coenzyme F420:heterodisulfide oxidoreductase activity molecular_function
GO:0052753 propan-2-ol:coenzyme F420 oxidoreductase activity molecular_function
GO:0052754 GTP:coenzyme F420 guanyltransferase activity molecular_function
GO:0052755 reduced coenzyme F420:2,3-dimethyl-1,4-naphthoquinone oxidoreductase activity molecular_function
GO:0052756 sulfite reductase (coenzyme F420) activity molecular_function
GO:0052757 aflatoxin reductase (coenzyme F420) activity molecular_function
GO:0052758 F420H2:NADP+ oxidoreductase activity molecular_function
GO:0097157 pre-mRNA intronic binding molecular_function
GO:0097158 pre-mRNA intronic pyrimidine-rich binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0097160 polychlorinated biphenyl binding molecular_function
GO:2001074 regulation of metanephric ureteric bud development biological_process
GO:2001075 negative regulation of metanephric ureteric bud development biological_process
GO:2001076 positive regulation of metanephric ureteric bud development biological_process
GO:2001086 laminarabiose transport biological_process
GO:2001087 sophorose transport biological_process
GO:2001088 trisaccharide transport biological_process
GO:2001089 maltotriose transport biological_process
GO:2001090 maltotriulose transport biological_process
GO:2001091 nigerotriose transport biological_process
GO:2001092 arabinotriose transport biological_process
GO:2001093 galactotriose transport biological_process
GO:2001094 xylotriose transport biological_process
GO:2001095 mannotriose transport biological_process
GO:2001096 cellotriose transport biological_process
GO:2001097 laminaritriose transport biological_process
GO:2001098 tetrasaccharide transport biological_process
GO:2001099 maltotetraose transport biological_process
GO:2001100 pentasaccharide transport biological_process
GO:2001101 maltopentaose transport biological_process
GO:2001102 hexasaccharide transport biological_process
GO:2001103 maltohexaose transport biological_process
GO:2001104 heptasaccharide transport biological_process
GO:2001105 maltoheptaose transport biological_process

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment synonym xref is_a intersection_of is_obsolete consider
Term ID name def comment synonym xref is_a intersection_of is_obsolete consider
GO:0000083
regulation of transcription involved in G1/S phase of mitotic cell cycle		 2 A
GO:0000985
bacterial-type RNA polymerase core promoter sequence-specific DNA binding		 1 D
GO:0001054
RNA polymerase I activity		 2 A
GO:0001055
RNA polymerase II activity		 2 A
GO:0001056
RNA polymerase III activity		 2 A
GO:0001057
RNA polymerase IV activity		 2 A
GO:0001058
RNA polymerase V activity		 2 A
GO:0001976
neurological system process involved in regulation of systemic arterial blood pressure		 2 A
GO:0001985
negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure		 2 A
GO:0001988
positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure		 2 A
GO:0002379
immunoglobulin biosynthetic process involved in immune response		 2 A
GO:0002380
immunoglobulin secretion involved in immune response		 2 A
GO:0003267
canonical Wnt receptor signaling pathway involved in positive regulation of secondary heart field cardioblast proliferation		 2 A
GO:0003270
Notch signaling pathway involved in regulation of secondary heart field cardioblast proliferation		 2 A
GO:0004467
long-chain fatty acid-CoA ligase activity		 1 D
GO:0008046
axon guidance receptor activity		 2 A
GO:0008543
fibroblast growth factor receptor signaling pathway		 1 A
GO:0008810
cellulase activity		 2 D, 2 A
GO:0010131
sucrose catabolic process, using invertase or sucrose synthase		 C A 1 D A 3 A
GO:0014065
phosphatidylinositol 3-kinase cascade		 1 D, 1 A
GO:0018532
coenzyme F420-independent 5,10-methenyl-5,6,7,8-tetrahydromethanopterin dehydrogenase activity		 C 1 A
GO:0018537
coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity		 C
GO:0019574
sucrose catabolic process via 3'-ketosucrose		 C C 2 A
GO:0019575
sucrose catabolic process, using beta-fructofuranosidase		 C A 1 D A 2 A
GO:0023019
signal transduction involved in regulation of gene expression		 2 A
GO:0030268
methylenetetrahydromethanopterin dehydrogenase activity		 C
GO:0030733
fatty acid O-methyltransferase activity		 1 D
GO:0034509
centromeric core chromatin assembly		 1 D, 1 A
GO:0035426
extracellular matrix-cell signaling		 1 D, 1 A
GO:0035446
cysteine-glucosaminylinositol ligase activity
GO:0035595
N-acetylglucosaminylinositol deacetylase activity		 2 A
GO:0035630
bone mineralization involved in bone maturation		 1 D, 1 A
GO:0035734
intraflagellar transport involved in flagellum organisation		 2 A
GO:0043738
reduced coenzyme F420 dehydrogenase activity		 C C 2 A 1 D, 1 A
GO:0043794
formate dehydrogenase (coenzyme F420) activity		 C C 1 A
GO:0043910
ATP:coenzyme F420 adenyltransferase activity		 C C 1 D, 1 A 1 A
GO:0044101
(R)-citramalyl-CoA lyase activity		 1 D, 1 A
GO:0045168
cell-cell signaling involved in cell fate commitment		 1 D, 1 A
GO:0046429
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity		 1 D
GO:0046568
3-methylbutanol:NAD(P) oxidoreductase activity		 1 D
GO:0048017
inositol lipid-mediated signaling		 1 D, 1 A
GO:0048557
embryonic digestive tract morphogenesis		 1 D
GO:0048699
generation of neurons		 1 D, 1 A
GO:0050454
coenzyme F420 hydrogenase activity		 C
GO:0052622
ATP dimethylallyltransferase activity		 1 D
GO:0052623
ADP dimethylallyltransferase activity		 1 D
GO:0052645
F420-0 metabolic process		 1 A
GO:0052741
(R)-limonene 6-monooxygenase activity		 1 D
GO:0060128
corticotropin hormone secreting cell differentiation		 1 D
GO:0060131
corticotropin hormone secreting cell development		 1 D
GO:0060413
atrial septum morphogenesis		 1 D
GO:0070036
GTP-dependent helicase activity		 1 D, 1 A
GO:0071930
negative regulation of transcription involved in G1/S phase of mitotic cell cycle		 2 A
GO:0071931
positive regulation of transcription involved in G1/S phase of mitotic cell cycle		 2 A
GO:0071935
octopamine signaling pathway involved in response to food		 2 A
GO:0071937
barrier septum formation involved in cell cycle cytokinesis		 2 A
GO:0071947
protein deubiquitination involved in ubiquitin-dependent protein catabolic process		 2 A
GO:0072000
extracellular polysaccharide catabolic process involved in ascospore release from ascus		 2 A
GO:0072037
mesenchymal stem cell differentiation involved in nephron morphogenesis		 2 A
GO:0072281
mesenchymal stem cell differentiation involved in metanephric nephron morphogenesis		 2 A
GO:0072316
alpha-glucan catabolic process involved in ascospore release from ascus		 2 A
GO:0072317
glucan endo-1,3-beta-D-glucosidase activity involved in ascospore release from ascus		 2 A
GO:0072335
regulation of canonical Wnt receptor signaling pathway involved in neural crest cell differentiation		 2 A
GO:0072336
negative regulation of canonical Wnt receptor signaling pathway involved in neural crest cell differentiation		 2 A
GO:0072381
positive regulation of canonical Wnt receptor signaling pathway involved in neural crest cell differentiation		 2 A
GO:0072395
signal transduction involved in cell cycle checkpoint		 2 A
GO:0072398
signal transduction involved in cytokinesis checkpoint		 2 A
GO:0072401
signal transduction involved in DNA integrity checkpoint		 2 A
GO:0072404
signal transduction involved in G1/S transition checkpoint		 2 A
GO:0072407
signal transduction involved in G2/M transition checkpoint		 2 A
GO:0072409
detection of stimulus involved in meiotic cell cycle checkpoint		 2 A
GO:0072411
signal transduction involved in meiotic cell cycle checkpoint		 2 A
GO:0072412
detection of stimulus involved in mitotic cell cycle checkpoint		 2 A
GO:0072413
signal transduction involved in mitotic cell cycle checkpoint		 2 A
GO:0072415
detection of stimulus involved in spindle checkpoint		 2 A
GO:0072416
signal transduction involved in spindle checkpoint		 2 A
GO:0072418
detection of stimulus involved in septin checkpoint		 2 A
GO:0072419
signal transduction involved in septin checkpoint		 2 A
GO:0072422
signal transduction involved in DNA damage checkpoint		 2 A
GO:0072425
signal transduction involved in G2/M transition DNA damage checkpoint		 2 A
GO:0072428
signal transduction involved in intra-S DNA damage checkpoint		 2 A
GO:0072431
signal transduction involved in mitotic cell cycle G1/S transition DNA damage checkpoint		 2 A
GO:0072436
detection of stimulus involved in DNA replication checkpoint		 2 A
GO:0072437
signal transduction involved in DNA replication checkpoint		 2 A
GO:0072442
detection of stimulus involved in mitotic DNA replication checkpoint		 2 A
GO:0072443
signal transduction involved in mitotic DNA replication checkpoint		 2 A
GO:0072448
detection of stimulus involved in mitotic cell cycle G1/S transition size control checkpoint		 2 A
GO:0072450
signal transduction involved in mitotic cell cycle G1/S transition size control checkpoint		 2 A
GO:0072451
detection of stimulus involved in G2/M transition size control checkpoint		 2 A
GO:0072453
signal transduction involved in G2/M transition size control checkpoint		 2 A
GO:0080087
callose binding		 1 D
GO:0090388
phagosome-lysosome docking involved in apoptotic cell clearance		 1 D, 1 A

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9086
9086 (100.0%) defined 		9103
9103 (100.0%) defined 		+17
cellular component 2896
2896 (100.0%) defined 		2897
2897 (100.0%) defined 		+1
biological process 21406
21406 (100.0%) defined 		21432
21432 (100.0%) defined 		+26
Obsolete 1583
(4.5% of total)		 1585
(4.5% of total)		 +2 (+0.1%)
Totals 33388
33388 (100.0%) defined
34971 inc. obsoletes 		33432
33432 (100.0%) defined
35017 inc. obsoletes 		+46 (+0.1%)

Ontology report info