Gene Ontology
Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2011-09-03.obo; date: 02:09:2011 15:07; CVS revision: 1.2232
- file 2 (new): go-2011-09-10.obo; date: 09:09:2011 11:25; CVS revision: 1.2244

NEW TERMS
=========

ID	name	namespace
GO:0036000	mucocyst	cellular_component
GO:0036001	'de novo' pyridoxal 5'-phosphate biosynthetic process	biological_process
GO:0038028	insulin receptor signaling pathway via phosphatidylinositol 3-kinase cascade	biological_process
GO:0038029	epidermal growth factor receptor signaling pathway via MAPKKK cascade	biological_process
GO:0038030	non-canonical Wnt receptor signaling pathway via MAPKKK cascade	biological_process
GO:0038031	non-canonical Wnt receptor signaling pathway via JNK cascade	biological_process
GO:0097152	mesenchymal cell apoptosis	biological_process
GO:0097153	cysteine-type endopeptidase activity involved in apoptotic process	molecular_function
GO:2001047	regulation of G1/S transition checkpoint	biological_process
GO:2001048	negative regulation of G1/S transition checkpoint	biological_process
GO:2001052	positive regulation of G1/S transition checkpoint	biological_process
GO:2001053	regulation of mesenchymal cell apoptosis	biological_process
GO:2001054	negative regulation of mesenchymal cell apoptosis	biological_process
GO:2001055	positive regulation of mesenchymal cell apoptosis	biological_process
GO:2001057	reactive nitrogen species metabolic process	biological_process
GO:2001058	D-tagatose 6-phosphate metabolic process	biological_process
GO:2001059	D-tagatose 6-phosphate catabolic process	biological_process
GO:2001060	D-glycero-D-manno-heptose 7-phosphate metabolic process	biological_process
GO:2001061	D-glycero-D-manno-heptose 7-phosphate biosynthetic process	biological_process


OBSOLETIONS
===========
GO:0035557, intracellular signal transduction involved in cell surface receptor linked signaling (biological_process)
GO:0035558, phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling (biological_process)
GO:0035559, MAPKKK cascade involved in epidermal growth factor receptor signaling (biological_process)
GO:0090412, positive regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process (biological_process)
GO:0090413, negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process (biological_process)


TERM MERGES
===========
GO:0034404, nucleobase, nucleoside and nucleotide biosynthetic process was merged into GO:0034654, nucleobase-containing biosynthetic process
GO:0034656, nucleobase, nucleoside and nucleotide catabolic process was merged into GO:0034655, nucleobase-containing catabolic process
GO:0055086, nucleobase, nucleoside and nucleotide metabolic process was merged into GO:0006139, nucleobase-containing compound metabolic process


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	alt_id	def	comment	subset	synonym	xref	is_a	intersection_of	relationship	is_obsolete	consider	
GO:0003179						2 A							
GO:0004733										1 A			
GO:0006139	C	1 A				3 A	21 A	1 A					
GO:0006753								1 D, 1 A					
GO:0006913				A									
GO:0007219			C										
GO:0007227								1 D, 1 A					
GO:0008101	C		C			3 D, 5 A							
GO:0008293			C										
GO:0008615							1 D						
GO:0008655								1 D, 1 A					
GO:0009034							1 A						
GO:0009112								1 D, 1 A					
GO:0009116								1 D, 1 A					
GO:0009163								1 D, 1 A					
GO:0009164								1 D, 1 A					
GO:0009165								1 D, 1 A					
GO:0009166								1 D, 1 A					
GO:0009443								1 D					
GO:0010144								1 D, 1 A					
GO:0010678	C					1 A			3 A				
GO:0015931	C					1 A							
GO:0015932	C					1 A							
GO:0015949	C					1 A		1 D, 1 A					
GO:0017137								1 D					
GO:0019205	C					1 A							
GO:0019219	C					1 A							
GO:0019221			C										
GO:0023035			C										
GO:0032239	C					1 A							
GO:0032240	C					1 A							
GO:0032241	C					1 A							
GO:0033626	C					1 A		1 A					
GO:0034654	C	1 A				1 D, 6 A		1 A					
GO:0034655	C	1 A				5 A		1 A					
GO:0035557			C	A				1 D		1 D	A		
GO:0035558			C	A				2 D		1 D	A	1 A	
GO:0035559			C	A				2 D		1 D	A	1 A	
GO:0038027			C										
GO:0042819						1 A							
GO:0042823							1 A						
GO:0043101								1 D, 1 A					
GO:0043281	C		C			1 A		2 D, 1 A	2 A	1 A			
GO:0045500			C										
GO:0045934	C					1 A							
GO:0045935	C					1 A							
GO:0046112								1 D, 1 A					
GO:0046113								1 D, 1 A					
GO:0055085				A									
GO:0070120			C										
GO:0071847													
GO:0090097	C		C			1 A							
GO:0090098	C		C			1 A							
GO:0090099	C		C			1 A							
GO:0090412								2 D	2 D	1 D	A		
GO:0090413								2 D	2 D	1 D	A		
GO:0097103													
GO:2000001					1 D								
GO:2000002					1 D								
GO:2000003					1 D								
GO:2000015					1 D								
GO:2000016					1 D								
GO:2000017					1 D								
GO:2000018					1 D								
GO:2000019					1 D								
GO:2000020					1 D								
GO:2000531	C		C			10 D		1 A	2 D	1 D			



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9062	9063	+1
	(9062 defined)	(9063 defined)	
cellular component	2895	2896	+1
	(2895 defined)	(2896 defined)	
biological process	21387	21396	+9
	(21387 defined)	(21396 defined)	

Obsolete	1575	1580	+5
	(4.5% of total)	 (4.5% of total)	(+0.3%)

Totals	33344	33355	+16 (0.0%)
	33344 (100.0%) defined	33355 (100.0%) defined	
	34919 inc. obs	34935 inc. obs