Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-09-03.obo; date: 02:09:2011 15:07; CVS revision: 1.2232
  • file 2 (new): go-2011-09-10.obo; date: 09:09:2011 11:25; CVS revision: 1.2244

New terms

ID name namespace
GO:0036000 mucocyst cellular_component
GO:0036001 'de novo' pyridoxal 5'-phosphate biosynthetic process biological_process
GO:0038028 insulin receptor signaling pathway via phosphatidylinositol 3-kinase cascade biological_process
GO:0038029 epidermal growth factor receptor signaling pathway via MAPKKK cascade biological_process
GO:0038030 non-canonical Wnt receptor signaling pathway via MAPKKK cascade biological_process
GO:0038031 non-canonical Wnt receptor signaling pathway via JNK cascade biological_process
GO:0097152 mesenchymal cell apoptosis biological_process
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:2001047 regulation of G1/S transition checkpoint biological_process
GO:2001048 negative regulation of G1/S transition checkpoint biological_process
GO:2001052 positive regulation of G1/S transition checkpoint biological_process
GO:2001053 regulation of mesenchymal cell apoptosis biological_process
GO:2001054 negative regulation of mesenchymal cell apoptosis biological_process
GO:2001055 positive regulation of mesenchymal cell apoptosis biological_process
GO:2001057 reactive nitrogen species metabolic process biological_process
GO:2001058 D-tagatose 6-phosphate metabolic process biological_process
GO:2001059 D-tagatose 6-phosphate catabolic process biological_process
GO:2001060 D-glycero-D-manno-heptose 7-phosphate metabolic process biological_process
GO:2001061 D-glycero-D-manno-heptose 7-phosphate biosynthetic process biological_process

Term merges

Old ID Old name Merged into Merged term name
GO:0034404nucleobase, nucleoside and nucleotide biosynthetic processGO:0034654nucleobase-containing biosynthetic process
GO:0034656nucleobase, nucleoside and nucleotide catabolic processGO:0034655nucleobase-containing catabolic process
GO:0055086nucleobase, nucleoside and nucleotide metabolic processGO:0006139nucleobase-containing compound metabolic process

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name alt_id def comment subset synonym xref is_a intersection_of relationship is_obsolete consider
Term ID name alt_id def comment subset synonym xref is_a intersection_of relationship is_obsolete consider
GO:0003179
heart valve morphogenesis		 2 A
GO:0004733
pyridoxamine-phosphate oxidase activity		 1 A
GO:0006139
nucleobase-containing compound metabolic process		 C 1 A 3 A 21 A 1 A
GO:0006753
nucleoside phosphate metabolic process		 1 D, 1 A
GO:0006913
nucleocytoplasmic transport		 A
GO:0007219
Notch signaling pathway		 C
GO:0007227
signal transduction downstream of smoothened		 1 D, 1 A
GO:0008101
decapentaplegic signaling pathway		 C C 3 D, 5 A
GO:0008293
torso signaling pathway		 C
GO:0008615
pyridoxine biosynthetic process		 1 D
GO:0008655
pyrimidine-containing compound salvage		 1 D, 1 A
GO:0009034
tryptophanase activity		 1 A
GO:0009112
nucleobase metabolic process		 1 D, 1 A
GO:0009116
nucleoside metabolic process		 1 D, 1 A
GO:0009163
nucleoside biosynthetic process		 1 D, 1 A
GO:0009164
nucleoside catabolic process		 1 D, 1 A
GO:0009165
nucleotide biosynthetic process		 1 D, 1 A
GO:0009166
nucleotide catabolic process		 1 D, 1 A
GO:0009443
pyridoxal 5'-phosphate salvage		 1 D
GO:0010144
pyridoxal phosphate biosynthetic process from pyridoxamine		 1 D, 1 A
GO:0010678
negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-dependent		 C 1 A 3 A
GO:0015931
nucleobase-containing compound transport		 C 1 A
GO:0015932
nucleobase-containing compound transmembrane transporter activity		 C 1 A
GO:0015949
nucleobase-containing compound interconversion		 C 1 A 1 D, 1 A
GO:0017137
Rab GTPase binding		 1 D
GO:0019205
nucleobase-containing compound kinase activity		 C 1 A
GO:0019219
regulation of nucleobase-containing compound metabolic process		 C 1 A
GO:0019221
cytokine-mediated signaling pathway		 C
GO:0023035
CD40 signaling pathway		 C
GO:0032239
regulation of nucleobase-containing compound transport		 C 1 A
GO:0032240
negative regulation of nucleobase-containing compound transport		 C 1 A
GO:0032241
positive regulation of nucleobase-containing compound transport		 C 1 A
GO:0033626
positive regulation of integrin activation by cell surface receptor linked signal transduction		 C 1 A 1 A
GO:0034654
nucleobase-containing biosynthetic process		 C 1 A 1 D, 6 A 1 A
GO:0034655
nucleobase-containing catabolic process		 C 1 A 5 A 1 A
GO:0035557
intracellular signal transduction involved in cell surface receptor linked signaling		 C A 1 D 1 D A
GO:0035558
phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling		 C A 2 D 1 D A 1 A
GO:0035559
MAPKKK cascade involved in epidermal growth factor receptor signaling		 C A 2 D 1 D A 1 A
GO:0038027
apolipoprotein A-I-mediated signaling pathway		 C
GO:0042819
vitamin B6 biosynthetic process		 1 A
GO:0042823
pyridoxal phosphate biosynthetic process		 1 A
GO:0043101
purine-containing compound salvage		 1 D, 1 A
GO:0043281
regulation of cysteine-type endopeptidase activity involved in apoptotic process		 C C 1 A 2 D, 1 A 2 A 1 A
GO:0045500
sevenless signaling pathway		 C
GO:0045934
negative regulation of nucleobase-containing compound metabolic process		 C 1 A
GO:0045935
positive regulation of nucleobase-containing compound metabolic process		 C 1 A
GO:0046112
nucleobase biosynthetic process		 1 D, 1 A
GO:0046113
nucleobase catabolic process		 1 D, 1 A
GO:0055085
transmembrane transport		 A
GO:0070120
ciliary neurotrophic factor-mediated signaling pathway		 C
GO:0071847
TNFSF11-mediated signaling pathway
GO:0090097
regulation of decapentaplegic signaling pathway		 C C 1 A
GO:0090098
positive regulation of decapentaplegic signaling pathway		 C C 1 A
GO:0090099
negative regulation of decapentaplegic signaling pathway		 C C 1 A
GO:0090412
positive regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process		 2 D 2 D 1 D A
GO:0090413
negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process		 2 D 2 D 1 D A
GO:0097103
endothelial stalk cell fate specification
GO:2000001
regulation of DNA damage checkpoint		 1 D
GO:2000002
negative regulation of DNA damage checkpoint		 1 D
GO:2000003
positive regulation of DNA damage checkpoint		 1 D
GO:2000015
regulation of determination of dorsal identity		 1 D
GO:2000016
negative regulation of determination of dorsal identity		 1 D
GO:2000017
positive regulation of determination of dorsal identity		 1 D
GO:2000018
regulation of male gonad development		 1 D
GO:2000019
negative regulation of male gonad development		 1 D
GO:2000020
positive regulation of male gonad development		 1 D
GO:2000531
regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter		 C C 10 D 1 A 2 D 1 D

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9062
9062 (100.0%) defined 		9063
9063 (100.0%) defined 		+1
cellular component 2895
2895 (100.0%) defined 		2896
2896 (100.0%) defined 		+1
biological process 21387
21387 (100.0%) defined 		21396
21396 (100.0%) defined 		+9
Obsolete 1575
(4.5% of total)		 1580
(4.5% of total)		 +5 (+0.3%)
Totals 33344
33344 (100.0%) defined
34919 inc. obsoletes 		33355
33355 (100.0%) defined
34935 inc. obsoletes 		+16 (0.0%)

Ontology report info