Gene Ontology
Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2011-08-13.obo; date: 12:08:2011 16:34; CVS revision: 1.2181
- file 2 (new): go-2011-08-20.obo; date: 19:08:2011 16:54; CVS revision: 1.2200

NEW TERMS
=========

ID	name	namespace
GO:0001179	RNA polymerase I transcription factor binding	molecular_function
GO:0001180	transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript	biological_process
GO:0001181	core RNA polymerase I binding transcription factor activity	molecular_function
GO:0001182	promoter clearance from RNA polymerase I promoter	biological_process
GO:0001183	transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript	biological_process
GO:0001184	promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript	biological_process
GO:0001185	termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript	biological_process
GO:0035974	meiotic spindle pole body	cellular_component
GO:0035975	carbamoyl phosphate catabolic process	biological_process
GO:0035976	AP1 complex	cellular_component
GO:0035977	protein deglycosylation involved in glycoprotein catabolic process	biological_process
GO:0052719	apurinic/apyrimidinic endoribonuclease activity	molecular_function
GO:0052720	apurinic/apyrimidinic endodeoxyribonuclease activity	molecular_function
GO:0052721	regulation of apurinic/apyrimidinic endodeoxyribonuclease activity	biological_process
GO:0052722	fatty acid in-chain hydroxylase activity	molecular_function
GO:0052723	inositol hexakisphosphate 1-kinase activity	molecular_function
GO:0052724	inositol hexakisphosphate 3-kinase activity	molecular_function
GO:0052725	inositol-1,3,4-trisphosphate 6-kinase activity	molecular_function
GO:0052726	inositol-1,3,4-trisphosphate 5-kinase activity	molecular_function
GO:0052727	capsanthin synthase activity	molecular_function
GO:0052728	capsorubin synthase activity	molecular_function
GO:0052729	dimethylglycine N-methyltransferase activity	molecular_function
GO:0052730	sarcosine N-methyltransferase activity	molecular_function
GO:0052731	phosphocholine phosphatase activity	molecular_function
GO:0052732	phosphoethanolamine phosphatase activity	molecular_function
GO:0052733	quinate 3-dehydrogenase (NADP+) activity	molecular_function
GO:0052734	shikimate 3-dehydrogenase (NAD+) activity	molecular_function
GO:0052735	tRNA (cytosine-3-)-methyltransferase activity	molecular_function
GO:0052736	beta-glucanase activity	molecular_function
GO:0072690	vegetative growth of a single-celled organism	biological_process
GO:0072691	initiation of premeiotic DNA replication	biological_process
GO:0080186	developmental vegetative growth	biological_process
GO:2001013	epithelial cell proliferation involve in renal tubule morphogenesis	biological_process
GO:2001017	regulation of retrograde axon cargo transport	biological_process
GO:2001018	negative regulation of retrograde axon cargo transport	biological_process
GO:2001019	positive regulation of retrograde axon cargo transport	biological_process


OBSOLETIONS
===========

None


TERM MERGES
===========
GO:0000420, DNA-directed RNA polymerase IVa complex was merged into GO:0000418, DNA-directed RNA polymerase IV complex
GO:0010953, regulation of protein maturation by peptide bond cleavage was merged into GO:0070613, regulation of protein processing
GO:0051605, protein maturation by peptide bond cleavage was merged into GO:0016485, protein processing
GO:0080137, DNA-directed RNA polymerase V complex was merged into GO:0000419, DNA-directed RNA polymerase V complex


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	alt_id	def	comment	synonym	xref	is_a	intersection_of	relationship	consider	
GO:0000418		1 A	C		1 A						
GO:0000419	C	1 A	C		1 A		1 D, 1 A				
GO:0000785			C								
GO:0000789			C								
GO:0000790			C								
GO:0000825						1 A					
GO:0000830							1 D, 1 A				
GO:0000831							1 D, 1 A				
GO:0000832						1 A					
GO:0000833							1 D, 1 A				
GO:0000834							1 D, 1 A				
GO:0000903									1 A		
GO:0000988			C						1 D, 1 A		
GO:0000989			C								
GO:0000990			C								
GO:0000991			C								
GO:0000995			C								
GO:0001007			C								
GO:0001076			C								
GO:0001082			C						2 A		
GO:0001083			C								
GO:0001164					1 A						
GO:0001169					1 A						
GO:0002192			C								
GO:0002541							1 D, 1 A				
GO:0003682			C								
GO:0004352	C										
GO:0004446	C				3 D, 4 A						
GO:0004730					1 A						
GO:0004764	C		C		4 D, 4 A	3 A					
GO:0005006	C		C	A	1 A				1 A		
GO:0005007	C		C	A	2 A				1 A		
GO:0005008	C		C	A	2 A						
GO:0005009	C		C	A	1 A				1 A		
GO:0005010	C		C	A	3 A				1 A		
GO:0005017	C		C	A	2 A				1 A		
GO:0005021	C		C	A	2 A						
GO:0005024	C			A	2 A				1 A		
GO:0005971					2 A						
GO:0006465							1 D, 1 A				
GO:0006510										1 D, 1 A	
GO:0006517							1 D				
GO:0007165									1 A		
GO:0007175	C		C		1 A						
GO:0007176	C		C		1 A						
GO:0007366							1 A				
GO:0007386	C										
GO:0007448	C										
GO:0008313	C				1 A						
GO:0008934	C				1 D, 1 A						
GO:0009952	C				1 D, 1 A						
GO:0009955	C				1 D, 1 A						
GO:0010448							1 A				
GO:0010496							1 D, 1 A				
GO:0010755							1 D, 1 A				
GO:0010954	C				1 A		2 D, 1 A	1 D, 1 A	1 D, 1 A		
GO:0010955	C				1 A		2 D, 1 A	1 D, 1 A	1 D, 1 A		
GO:0014889				A							
GO:0016485		1 A	C		4 A						
GO:0016486							1 D, 1 A				
GO:0016568			C								
GO:0017002	C			A	1 A				1 A		
GO:0017174						5 A					
GO:0017177	C				1 A						
GO:0018456	C										
GO:0021797	C				1 D, 1 A						
GO:0030266	C		C		2 D, 4 A	3 A					
GO:0030449							1 D, 1 A				
GO:0031315									1 A		
GO:0031497			C								
GO:0031498			C								
GO:0031551	C		C		1 A						
GO:0031552	C		C		1 A						
GO:0031553	C		C		1 A						
GO:0031638							1 D, 1 A				
GO:0032005	C						1 D		1 A		
GO:0032440	C										
GO:0032905	C				1 A						
GO:0032906	C				1 A						
GO:0032907	C				1 A						
GO:0032908	C				1 A						
GO:0032909	C				1 A						
GO:0032910	C				1 A						
GO:0032911	C				1 A						
GO:0032912	C				1 A						
GO:0032913	C				1 A						
GO:0032914	C				1 D, 1 A						
GO:0032915	C				1 A						
GO:0032916	C				1 A						
GO:0033709			C								
GO:0033903							1 D, 1 A				
GO:0033919					1 D, 1 A						
GO:0033946							1 D, 1 A				
GO:0033950							1 D, 1 A				
GO:0035054	C										
GO:0035103							1 D, 1 A				
GO:0035300						1 D					
GO:0035334							1 D, 1 A				
GO:0035551							1 D, 1 A				
GO:0035561			C								
GO:0035562			C								
GO:0035563			C								
GO:0035625	C		C		1 A						
GO:0035630								2 A			
GO:0035798	C										
GO:0038005							1 D, 1 A				
GO:0042790	C		C								
GO:0042813	C		C		1 A				1 A		
GO:0043957	C		C		2 A	1 D, 2 A					
GO:0043958			C			2 D, 2 A					
GO:0045741	C		C		1 A						
GO:0051286				A			1 D, 1 A				
GO:0052632			C								
GO:0052662			C								
GO:0060175	C		C	A	2 A				1 A		
GO:0060187				A							
GO:0060568							1 D, 1 A				
GO:0061289							1 A		1 D		
GO:0070613		1 A	C		1 A						
GO:0071586							1 D, 1 A				
GO:0071604	C				1 A						
GO:0071634	C				1 A						
GO:0071635	C				1 A						
GO:0071636	C				1 A						
GO:0072043			C								
GO:0072168							1 A				
GO:0072169							1 A				
GO:0072689			C								
GO:0080120									1 D, 1 A		
GO:0080184			C								



OTHER STANZA TYPES
==================

Stanzas Edited
==============

Stanza type	ID	Name
Typedef	occurs_in	occurs in



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9043	9062	+19
	(9043 defined)	(9062 defined)	
cellular component	2892	2892	
	(2892 defined)	(2892 defined)	
biological process	21317	21330	+13
	(21317 defined)	(21330 defined)	

Obsolete	1564	1564	0
	(4.5% of total)	 (4.5% of total)	(0.0%)

Totals	33252	33284	+32 (+0.1%)
	33252 (100.0%) defined	33284 (100.0%) defined	
	34816 inc. obs	34848 inc. obs