Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-08-13.obo; date: 12:08:2011 16:34; CVS revision: 1.2181
  • file 2 (new): go-2011-08-20.obo; date: 19:08:2011 16:54; CVS revision: 1.2200

New terms

ID name namespace
GO:0001179 RNA polymerase I transcription factor binding molecular_function
GO:0001180 transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript biological_process
GO:0001181 core RNA polymerase I binding transcription factor activity molecular_function
GO:0001182 promoter clearance from RNA polymerase I promoter biological_process
GO:0001183 transcription elongation from RNA polymerase I promoter for nuclear large rRNA transcript biological_process
GO:0001184 promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript biological_process
GO:0001185 termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript biological_process
GO:0035974 meiotic spindle pole body cellular_component
GO:0035975 carbamoyl phosphate catabolic process biological_process
GO:0035976 AP1 complex cellular_component
GO:0035977 protein deglycosylation involved in glycoprotein catabolic process biological_process
GO:0052719 apurinic/apyrimidinic endoribonuclease activity molecular_function
GO:0052720 apurinic/apyrimidinic endodeoxyribonuclease activity molecular_function
GO:0052721 regulation of apurinic/apyrimidinic endodeoxyribonuclease activity biological_process
GO:0052722 fatty acid in-chain hydroxylase activity molecular_function
GO:0052723 inositol hexakisphosphate 1-kinase activity molecular_function
GO:0052724 inositol hexakisphosphate 3-kinase activity molecular_function
GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity molecular_function
GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity molecular_function
GO:0052727 capsanthin synthase activity molecular_function
GO:0052728 capsorubin synthase activity molecular_function
GO:0052729 dimethylglycine N-methyltransferase activity molecular_function
GO:0052730 sarcosine N-methyltransferase activity molecular_function
GO:0052731 phosphocholine phosphatase activity molecular_function
GO:0052732 phosphoethanolamine phosphatase activity molecular_function
GO:0052733 quinate 3-dehydrogenase (NADP+) activity molecular_function
GO:0052734 shikimate 3-dehydrogenase (NAD+) activity molecular_function
GO:0052735 tRNA (cytosine-3-)-methyltransferase activity molecular_function
GO:0052736 beta-glucanase activity molecular_function
GO:0072690 vegetative growth of a single-celled organism biological_process
GO:0072691 initiation of premeiotic DNA replication biological_process
GO:0080186 developmental vegetative growth biological_process
GO:2001013 epithelial cell proliferation involve in renal tubule morphogenesis biological_process
GO:2001017 regulation of retrograde axon cargo transport biological_process
GO:2001018 negative regulation of retrograde axon cargo transport biological_process
GO:2001019 positive regulation of retrograde axon cargo transport biological_process

Obsoletions

None

Term merges

Old ID Old name Merged into Merged term name
GO:0000420DNA-directed RNA polymerase IVa complexGO:0000418DNA-directed RNA polymerase IV complex
GO:0010953regulation of protein maturation by peptide bond cleavageGO:0070613regulation of protein processing
GO:0051605protein maturation by peptide bond cleavageGO:0016485protein processing
GO:0080137DNA-directed RNA polymerase V complexGO:0000419DNA-directed RNA polymerase V complex

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name alt_id def comment synonym xref is_a intersection_of relationship consider
Term ID name alt_id def comment synonym xref is_a intersection_of relationship consider
GO:0000418
DNA-directed RNA polymerase IV complex		 1 A C 1 A
GO:0000419
DNA-directed RNA polymerase V complex		 C 1 A C 1 A 1 D, 1 A
GO:0000785
chromatin		 C
GO:0000789
cytoplasmic chromatin		 C
GO:0000790
nuclear chromatin		 C
GO:0000825
inositol tetrakisphosphate 6-kinase activity		 1 A
GO:0000830
inositol hexakisphosphate 4-kinase activity		 1 D, 1 A
GO:0000831
inositol hexakisphosphate 6-kinase activity		 1 D, 1 A
GO:0000832
inositol hexakisphosphate 5-kinase activity		 1 A
GO:0000833
inositol heptakisphosphate 4-kinase activity		 1 D, 1 A
GO:0000834
inositol heptakisphosphate 6-kinase activity		 1 D, 1 A
GO:0000903
regulation of cell shape during vegetative growth phase		 1 A
GO:0000988
protein binding transcription factor activity		 C 1 D, 1 A
GO:0000989
transcription factor binding transcription factor activity		 C
GO:0000990
core RNA polymerase binding transcription factor activity		 C
GO:0000991
core RNA polymerase II binding transcription factor activity		 C
GO:0000995
core RNA polymerase III binding transcription factor activity		 C
GO:0001007
RNA polymerase III transcription factor binding transcription factor activity		 C
GO:0001076
RNA polymerase II transcription factor binding transcription factor activity		 C
GO:0001082
RNA polymerase I transcription factor binding transcription factor activity		 C 2 A
GO:0001083
RNA polymerase II basal transcription factor binding transcription factor activity		 C
GO:0001164
RNA polymerase I core promoter sequence-specific DNA binding		 1 A
GO:0001169
RNA polymerase I core promoter sequence-specific DNA binding transcription factor activity		 1 A
GO:0002192
IRES-dependent translational initiation		 C
GO:0002541
activation of plasma proteins involved in acute inflammatory response		 1 D, 1 A
GO:0003682
chromatin binding		 C
GO:0004352
glutamate dehydrogenase (NAD+) activity		 C
GO:0004446
inositol-hexakisphosphate phosphatase activity		 C 3 D, 4 A
GO:0004730
pseudouridylate synthase activity		 1 A
GO:0004764
shikimate 3-dehydrogenase (NADP+) activity		 C C 4 D, 4 A 3 A
GO:0005006
epidermal growth factor-activated receptor activity		 C C A 1 A 1 A
GO:0005007
fibroblast growth factor-activated receptor activity		 C C A 2 A 1 A
GO:0005008
hepatocyte growth factor-activated receptor activity		 C C A 2 A
GO:0005009
insulin-activated receptor activity		 C C A 1 A 1 A
GO:0005010
insulin-like growth factor-activated receptor activity		 C C A 3 A 1 A
GO:0005017
platelet-derived growth factor-activated receptor activity		 C C A 2 A 1 A
GO:0005021
vascular endothelial growth factor-activated receptor activity		 C C A 2 A
GO:0005024
transforming growth factor beta-activated receptor activity		 C A 2 A 1 A
GO:0005971
ribonucleoside-diphosphate reductase complex		 2 A
GO:0006465
signal peptide processing		 1 D, 1 A
GO:0006510
ATP-dependent proteolysis		 1 D, 1 A
GO:0006517
protein deglycosylation		 1 D
GO:0007165
signal transduction		 1 A
GO:0007175
negative regulation of epidermal growth factor-activated receptor activity		 C C 1 A
GO:0007176
regulation of epidermal growth factor-activated receptor activity		 C C 1 A
GO:0007366
periodic partitioning by pair rule gene		 1 A
GO:0007386
compartment pattern specification		 C
GO:0007448
anterior/posterior pattern specification, imaginal disc		 C
GO:0008313
gurken-activated receptor activity		 C 1 A
GO:0008934
inositol monophosphate phosphatase activity		 C 1 D, 1 A
GO:0009952
anterior/posterior pattern specification		 C 1 D, 1 A
GO:0009955
adaxial/abaxial pattern specification		 C 1 D, 1 A
GO:0010448
vegetative meristem growth		 1 A
GO:0010496
intercellular transport		 1 D, 1 A
GO:0010755
regulation of plasminogen activation		 1 D, 1 A
GO:0010954
positive regulation of protein processing		 C 1 A 2 D, 1 A 1 D, 1 A 1 D, 1 A
GO:0010955
negative regulation of protein processing		 C 1 A 2 D, 1 A 1 D, 1 A 1 D, 1 A
GO:0014889
muscle atrophy		 A
GO:0016485
protein processing		 1 A C 4 A
GO:0016486
peptide hormone processing		 1 D, 1 A
GO:0016568
chromatin modification		 C
GO:0017002
activin-activated receptor activity		 C A 1 A 1 A
GO:0017174
glycine N-methyltransferase activity		 5 A
GO:0017177
glucosidase II complex		 C 1 A
GO:0018456
aryl-alcohol dehydrogenase (NAD+) activity		 C
GO:0021797
forebrain anterior/posterior pattern specification		 C 1 D, 1 A
GO:0030266
quinate 3-dehydrogenase (NAD+) activity		 C C 2 D, 4 A 3 A
GO:0030449
regulation of complement activation		 1 D, 1 A
GO:0031315
extrinsic to mitochondrial outer membrane		 1 A
GO:0031497
chromatin assembly		 C
GO:0031498
chromatin disassembly		 C
GO:0031551
regulation of brain-derived neurotrophic factor-activated receptor activity		 C C 1 A
GO:0031552
negative regulation of brain-derived neurotrophic factor-activated receptor activity		 C C 1 A
GO:0031553
positive regulation of brain-derived neurotrophic factor-activated receptor activity		 C C 1 A
GO:0031638
zymogen activation		 1 D, 1 A
GO:0032005
signal transduction involved in conjugation with cellular fusion		 C 1 D 1 A
GO:0032440
2-alkenal reductase [NAD(P)] activity		 C
GO:0032905
transforming growth factor beta1 production		 C 1 A
GO:0032906
transforming growth factor beta2 production		 C 1 A
GO:0032907
transforming growth factor beta3 production		 C 1 A
GO:0032908
regulation of transforming growth factor beta1 production		 C 1 A
GO:0032909
regulation of transforming growth factor beta2 production		 C 1 A
GO:0032910
regulation of transforming growth factor beta3 production		 C 1 A
GO:0032911
negative regulation of transforming growth factor beta1 production		 C 1 A
GO:0032912
negative regulation of transforming growth factor beta2 production		 C 1 A
GO:0032913
negative regulation of transforming growth factor beta3 production		 C 1 A
GO:0032914
positive regulation of transforming growth factor beta1 production		 C 1 D, 1 A
GO:0032915
positive regulation of transforming growth factor beta2 production		 C 1 A
GO:0032916
positive regulation of transforming growth factor beta3 production		 C 1 A
GO:0033709
D-arabinitol dehydrogenase, D-ribulose forming (NADP+) activity		 C
GO:0033903
endo-1,3(4)-beta-glucanase activity		 1 D, 1 A
GO:0033919
glucan 1,3-alpha-glucosidase activity		 1 D, 1 A
GO:0033946
xyloglucan-specific endo-beta-1,4-glucanase activity		 1 D, 1 A
GO:0033950
xyloglucan-specific exo-beta-1,4-glucanase activity		 1 D, 1 A
GO:0035054
embryonic heart tube anterior/posterior pattern specification		 C
GO:0035103
sterol regulatory element binding protein cleavage		 1 D, 1 A
GO:0035300
inositol-1,3,4-trisphosphate 5/6-kinase activity		 1 D
GO:0035334
Notch receptor processing, ligand-independent		 1 D, 1 A
GO:0035551
protein initiator methionine removal involved in protein maturation		 1 D, 1 A
GO:0035561
regulation of chromatin binding		 C
GO:0035562
negative regulation of chromatin binding		 C
GO:0035563
positive regulation of chromatin binding		 C
GO:0035625
epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway		 C C 1 A
GO:0035630
bone mineralization involved in bone maturation		 2 A
GO:0035798
2-alkenal reductase (NADP+) activity		 C
GO:0038005
peptide bond cleavage involved in epidermal growth factor receptor ligand maturation		 1 D, 1 A
GO:0042790
transcription of nuclear large rRNA transcript from RNA polymerase I promoter		 C C
GO:0042813
Wnt-activated receptor activity		 C C 1 A 1 A
GO:0043957
acryloyl-CoA reductase (NADP+) activity		 C C 2 A 1 D, 2 A
GO:0043958
acryloyl-CoA reductase activity		 C 2 D, 2 A
GO:0045741
positive regulation of epidermal growth factor-activated receptor activity		 C C 1 A
GO:0051286
cell tip		 A 1 D, 1 A
GO:0052632
citrate hydro-lyase (cis-aconitate-forming) activity		 C
GO:0052662
zeaxanthin epoxidase activity		 C
GO:0060175
brain-derived neurotrophic factor-activated receptor activity		 C C A 2 A 1 A
GO:0060187
cell pole		 A
GO:0060568
regulation of peptide hormone processing		 1 D, 1 A
GO:0061289
Wnt receptor signaling pathway involved in kidney development		 1 A 1 D
GO:0070613
regulation of protein processing		 1 A C 1 A
GO:0071586
CAAX-box protein processing		 1 D, 1 A
GO:0071604
transforming growth factor beta production		 C 1 A
GO:0071634
regulation of transforming growth factor beta production		 C 1 A
GO:0071635
negative regulation of transforming growth factor beta production		 C 1 A
GO:0071636
positive regulation of transforming growth factor beta production		 C 1 A
GO:0072043
regulation of pre-tubular aggregate formation by cell-cell signaling		 C
GO:0072168
specification of anterior mesonephric tubule identity		 1 A
GO:0072169
specification of posterior mesonephric tubule identity		 1 A
GO:0072689
MCM complex assembly		 C
GO:0080120
CAAX-box protein maturation		 1 D, 1 A
GO:0080184
response to phenylpropanoid		 C

Other Stanza Types

Stanzas Edited

Stanza type ID name
Typedef occurs_in occurs in

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9043
9043 (100.0%) defined 		9062
9062 (100.0%) defined 		+19
cellular component 2892
2892 (100.0%) defined 		2892
2892 (100.0%) defined 		0
biological process 21317
21317 (100.0%) defined 		21330
21330 (100.0%) defined 		+13
Obsolete 1564
(4.5% of total)		 1564
(4.5% of total)		 0 (0.0%)
Totals 33252
33252 (100.0%) defined
34816 inc. obsoletes 		33284
33284 (100.0%) defined
34848 inc. obsoletes 		+32 (+0.1%)

Ontology report info