Ontology Comparison Report ========================== Files used: - file 1 (old): go-2011-06-11.obo; date: 10:06:2011 13:58; CVS revision: 1.2028 - file 2 (new): go-2011-06-18.obo; date: 17:06:2011 13:42; CVS revision: 1.2042 NEW TERMS ========= ID name namespace GO:0002185 creatine kinase complex cellular_component GO:0002186 cytosolic creatine kinase complex cellular_component GO:0002187 mitochondrial creatine kinase complex cellular_component GO:0035888 isoguanine deaminase activity molecular_function GO:0035889 otolith tethering biological_process GO:0035890 exit from host biological_process GO:0035891 exit from host cell biological_process GO:0035892 modulation of platelet aggregation in other organism biological_process GO:0035893 negative regulation of platelet aggregation in other organism biological_process GO:0035894 positive regulation of platelet aggregation in other organism biological_process GO:0035895 modulation of mast cell degranulation in other organism biological_process GO:0035896 positive regulation of mast cell degranulation in other organism biological_process GO:0035897 proteolysis in other organism biological_process GO:0039510 suppression by virus of host ATP-dependent RNA helicase activity biological_process GO:0039511 suppression by virus of host interferon receptor activity biological_process GO:0039512 suppression by virus of host protein tyrosine kinase activity biological_process GO:0039513 suppression by virus of host catalytic activity biological_process GO:0039514 suppression by virus of host JAK-STAT cascade biological_process GO:0039515 suppression by virus of tyrosine phosphorylation of host STAT protein biological_process GO:0039516 modulation by virus of host catalytic activity biological_process GO:0039517 modulation by virus of host protein serine/threonine phosphatase activity biological_process GO:0052694 jasmonoyl-isoleucine-12-hydroxylase activity molecular_function GO:0097066 response to thyroid hormone stimulus biological_process GO:0097067 cellular response to thyroid hormone stimulus biological_process GO:0097068 response to thyroxine stimulus biological_process GO:0097069 cellular response to thyroxine stimulus biological_process GO:0097070 ductus arteriosus closure biological_process GO:0097071 interferon regulatory factor complex cellular_component GO:0097072 interferon regulatory factor 3 complex cellular_component GO:0097073 interferon regulatory factor 5 complex cellular_component GO:0097074 interferon regulatory factor 7 complex cellular_component GO:0097075 interferon regulatory factor 3-interferon regulatory factor 7 complex cellular_component GO:0097076 transforming growth factor beta activated kinase 1 complex cellular_component GO:0097077 copper ion sensor activity molecular_function GO:0097078 FAl1-SGD1 complex cellular_component GO:0097079 selenite:hydrogen symporter activity molecular_function GO:0097080 plasma membrane selenite transport biological_process GO:2000721 positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation biological_process GO:2000722 regulation of cardiac vascular smooth muscle cell differentiation biological_process GO:2000723 negative regulation of cardiac vascular smooth muscle cell differentiation biological_process GO:2000724 positive regulation of cardiac vascular smooth muscle cell differentiation biological_process GO:2000725 regulation of cardiac muscle cell differentiation biological_process GO:2000726 negative regulation of cardiac muscle cell differentiation biological_process GO:2000727 positive regulation of cardiac muscle cell differentiation biological_process GO:2000728 regulation of mRNA export from nucleus in response to heat stress biological_process GO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development biological_process GO:2000730 regulation of termination of RNA polymerase I transcription biological_process GO:2000731 negative regulation of termination of RNA polymerase I transcription biological_process GO:2000732 positive regulation of termination of RNA polymerase I transcription biological_process GO:2000733 regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation biological_process GO:2000734 negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation biological_process GO:2000735 positive regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation biological_process GO:2000736 regulation of stem cell differentiation biological_process GO:2000737 negative regulation of stem cell differentiation biological_process GO:2000738 positive regulation of stem cell differentiation biological_process GO:2000739 regulation of mesenchymal stem cell differentiation biological_process GO:2000740 negative regulation of mesenchymal stem cell differentiation biological_process GO:2000741 positive regulation of mesenchymal stem cell differentiation biological_process GO:2000742 regulation of anterior head development biological_process GO:2000743 negative regulation of anterior head development biological_process GO:2000744 positive regulation of anterior head development biological_process GO:2000745 positive regulation of transcription from RNA polymerase III promoter involved in smooth muscle cell differentiation biological_process GO:2000746 regulation of defecation rhythm biological_process GO:2000747 negative regulation of defecation rhythm biological_process GO:2000748 positive regulation of defecation rhythm biological_process GO:2000749 positive regulation of chromatin silencing at rDNA biological_process GO:2000750 negative regulation of establishment or maintenance of bipolar cell polarity regulating cell shape biological_process GO:2000751 histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore biological_process GO:2000752 regulation of glucosylceramide catabolic process biological_process GO:2000753 positive regulation of glucosylceramide catabolic process biological_process GO:2000754 regulation of sphingomyelin catabolic process biological_process GO:2000755 positive regulation of sphingomyelin catabolic process biological_process GO:2000756 regulation of peptidyl-lysine acetylation biological_process GO:2000757 negative regulation of peptidyl-lysine acetylation biological_process GO:2000758 positive regulation of peptidyl-lysine acetylation biological_process GO:2000759 regulation of N-terminal peptidyl-lysine acetylation biological_process GO:2000760 negative regulation of N-terminal peptidyl-lysine acetylation biological_process GO:2000761 positive regulation of N-terminal peptidyl-lysine acetylation biological_process GO:2000762 regulation of phenylpropanoid metabolic process biological_process OBSOLETIONS =========== None TERM MERGES =========== None TERM CHANGES ============ GO:0003337 : mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0003338 : metanephros morphogenesis GO:0003340 : negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0003904 : deoxyribodipyrimidine photo-lyase activity + synonym: "CPD photolyase activity" EXACT [PMID:16302973] GO:0006096 : glycolysis - def: The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. + def: The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. GO:0009962 : regulation of flavonoid biosynthetic process - is_a: GO:0043455 + is_a: GO:2000762 GO:0031537 : regulation of anthocyanin metabolic process - is_a: GO:0031323 - is_a: GO:0043455 + is_a: GO:2000762 GO:0035065 : regulation of histone acetylation + is_a: GO:2000756 GO:0035066 : positive regulation of histone acetylation + is_a: GO:2000758 GO:0035067 : negative regulation of histone acetylation + is_a: GO:2000757 GO:0035790 : platelet-derived growth factor receptor-alpha signaling pathway GO:0035791 : platelet-derived growth factor receptor-beta signaling pathway GO:0035803 : egg coat formation GO:0035806 : modulation of blood coagulation in other organism - name: modulation by organism of blood coagulation in other organism + name: modulation of blood coagulation in other organism - synonym: "modulation of blood coagulation in other organism" EXACT [GOC:bf] + synonym: "modulation by organism of blood coagulation in other organism" EXACT [GOC:bf] GO:0035807 : positive regulation of blood coagulation in other organism - name: positive regulation by organism of blood coagulation in other organism + name: positive regulation of blood coagulation in other organism - synonym: "positive regulation of blood coagulation in other organism" EXACT [GOC:bf] + synonym: "positive regulation by organism of blood coagulation in other organism" EXACT [GOC:bf] GO:0039507 : suppression by virus of host molecular function - synonym: "inhibition by virus of host protein function" EXACT [GOC:bf] - synonym: "inhibition of host protein function" BROAD [GOC:bf] + synonym: "inhibition by virus of host protein function" NARROW [GOC:bf] + synonym: "inhibition of host protein function" NARROW [GOC:bf] GO:0039508 : suppression by virus of host receptor activity - synonym: "inhibition by virus of host receptor activity" EXACT [GOC:bf] + synonym: "inhibition by virus of host receptor activity" NARROW [GOC:bf] GO:0039509 : suppression by virus of host pattern recognition receptor activity - synonym: "inhibition by virus of host pattern recognition receptor activity" EXACT [GOC:rf] - synonym: "viral inhibition of host pattern recognition receptor activity" EXACT [GOC:bf] + synonym: "viral inhibition of host pattern recognition receptor activity" NARROW [GOC:bf] + synonym: "inhibition by virus of host pattern recognition receptor activity" NARROW [GOC:rf] GO:0043153 : entrainment of circadian clock by photoperiod + synonym: "photoentrainment of circadian clock" EXACT [PMID:10217146] GO:0044323 : retinoic acid-responsive element binding GO:0044342 : type B pancreatic cell proliferation GO:0044343 : canonical Wnt receptor signaling pathway involved in regulation of type B pancreatic cell proliferation GO:0044344 : cellular response to fibroblast growth factor stimulus GO:0044345 : stromal-epithelial cell signaling involved in prostate gland development GO:0044346 : fibroblast apoptosis GO:0052055 : modulation by symbiont of host molecular function - is_a: GO:0052046 + is_a: GO:0044003 GO:0052214 : metabolism of substance in other organism involved in symbiotic interaction - is_a: GO:0051817 + relationship: part_of GO:0044403 GO:0052428 : modification by host of symbiont molecular function - is_a: GO:0052182 + is_a: GO:0051851 GO:0061029 : eyelid development in camera-type eye GO:0061030 : epithelial cell differentiation involved in mammary gland alveolus development GO:0061031 : endodermal digestive tract morphogenesis GO:0061032 : visceral serous pericardium development GO:0061046 : regulation of branching involved in lung morphogenesis GO:0061047 : positive regulation of branching involved in lung morphogenesis GO:0061048 : negative regulation of branching involved in lung morphogenesis GO:0061150 : renal system segmentation GO:0061151 : BMP signaling pathway involved in renal system segmentation GO:0061152 : trachea submucosa development GO:0061154 : endothelial tube morphogenesis GO:0061155 : pulmonary artery endothelial tube morphogenesis GO:0061156 : pulmonary artery morphogenesis GO:0061180 : mammary gland epithelium development GO:0061205 : paramesonephric duct development GO:0061351 : neural precursor cell proliferation GO:0061370 : testosterone biosynthetic process GO:0061373 : mammillary axonal complex development GO:0061374 : mammillothalamic axonal tract development GO:0061375 : mammillotectal axonal tract development GO:0061376 : mammillotegmental axonal tract development GO:0061377 : mammary gland lobule development GO:0061378 : corpora quadrigemina development GO:0061379 : inferior colliculus development GO:0061380 : superior colliculus development GO:0070040 : rRNA (adenine-C2-)-methyltransferase activity - def: Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C2-methyladenine. + def: Catalysis of the reaction: 2 S-adenosyl-L-methionine + adenine(2503) in 23S rRNA = S-adenosyl-L-homocysteine + 5'-deoxyadenosine + L-methionine + rRNA containing C2-methyladenine(2503) in 23S rRNA. + xref: EC:2.1.1.192 + xref: MetaCyc:RXN-11586 GO:0070633 : transepithelial transport GO:0070835 : chromium ion transmembrane transporter activity GO:0070890 : sodium-dependent L-ascorbate transmembrane transporter activity GO:0071104 : response to interleukin-9 GO:0071105 : response to interleukin-11 GO:0071107 : response to parathyroid hormone stimulus GO:0071503 : response to heparin GO:0071504 : cellular response to heparin GO:0071505 : response to mycophenolic acid GO:0071506 : cellular response to mycophenolic acid GO:0071680 : response to indole-3-methanol GO:0071681 : cellular response to indole-3-methanol GO:0071731 : response to nitric oxide GO:0071732 : cellular response to nitric oxide GO:0071772 : response to BMP stimulus GO:0071773 : cellular response to BMP stimulus GO:0071837 : HMG box domain binding GO:0071838 : cell proliferation in bone marrow GO:0071863 : regulation of cell proliferation in bone marrow GO:0071864 : positive regulation of cell proliferation in bone marrow GO:0071865 : regulation of apoptosis in bone marrow GO:0071866 : negative regulation of apoptosis in bone marrow GO:0085018 : maintenance of symbiont-containing vacuole via substance secreted by host GO:0090094 : metanephric cap mesenchymal cell proliferation involved in metanephros development GO:0090095 : regulation of metanephric cap mesenchymal cell proliferation GO:0090096 : positive regulation of metanephric cap mesenchymal cell proliferation GO:0090183 : regulation of kidney development GO:0090184 : positive regulation of kidney development GO:0090185 : negative regulation of kidney development GO:0090189 : regulation of branching involved in ureteric bud morphogenesis GO:0090190 : positive regulation of branching involved in ureteric bud morphogenesis GO:0090191 : negative regulation of branching involved in ureteric bud morphogenesis GO:0090192 : regulation of glomerulus development GO:0090193 : positive regulation of glomerulus development GO:0090194 : negative regulation of glomerulus development GO:0090259 : regulation of retinal ganglion cell axon guidance GO:0090260 : negative regulation of retinal ganglion cell axon guidance GO:0090370 : negative regulation of cholesterol efflux GO:2000004 : regulation of metanephric S-shaped body morphogenesis GO:2000005 : negative regulation of metanephric S-shaped body morphogenesis GO:2000006 : regulation of metanephric comma-shaped body morphogenesis GO:2000007 : negative regulation of metanephric comma-shaped body morphogenesis GO:2000018 : regulation of male gonad development GO:2000019 : negative regulation of male gonad development GO:2000050 : regulation of non-canonical Wnt receptor signaling pathway GO:2000051 : negative regulation of non-canonical Wnt receptor signaling pathway GO:2000052 : positive regulation of non-canonical Wnt receptor signaling pathway GO:2000053 : regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification GO:2000054 : negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification GO:2000061 : regulation of ureter smooth muscle cell differentiation GO:2000062 : negative regulation of ureter smooth muscle cell differentiation GO:2000063 : positive regulation of ureter smooth muscle cell differentiation GO:2000064 : regulation of cortisol biosynthetic process GO:2000065 : negative regulation of cortisol biosynthetic process GO:2000066 : positive regulation of cortisol biosynthetic process GO:2000074 : regulation of type B pancreatic cell development GO:2000077 : negative regulation of type B pancreatic cell development GO:2000078 : positive regulation of type B pancreatic cell development GO:2000079 : regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation GO:2000080 : negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation GO:2000081 : positive regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation GO:2000116 : regulation of cysteine-type endopeptidase activity GO:2000117 : negative regulation of cysteine-type endopeptidase activity GO:2000177 : regulation of neural precursor cell proliferation GO:2000178 : negative regulation of neural precursor cell proliferation GO:2000179 : positive regulation of neural precursor cell proliferation GO:2000180 : negative regulation of androgen biosynthetic process GO:2000181 : negative regulation of blood vessel morphogenesis GO:2000224 : regulation of testosterone biosynthetic process GO:2000225 : negative regulation of testosterone biosynthetic process GO:2000269 : regulation of fibroblast apoptosis GO:2000270 : negative regulation of fibroblast apoptosis GO:2000271 : positive regulation of fibroblast apoptosis GO:2000505 : regulation of energy homeostasis GO:2000506 : negative regulation of energy homeostasis GO:2000507 : positive regulation of energy homeostasis GO:2000532 : regulation of renal albumin absorption GO:2000533 : negative regulation of renal albumin absorption GO:2000534 : positive regulation of renal albumin absorption GO:2000584 : negative regulation of platelet-derived growth factor receptor-alpha signaling pathway GO:2000591 : positive regulation of metanephric mesenchymal cell migration GO:2000701 : glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation FILE STATS ========== Term counts for the old and new files Ontology Old file New file Change molecular function 9019 9023 +4 (9019 defined) (9023 defined) cellular component 2844 2854 +10 (2844 defined) (2854 defined) biological process 20831 20896 +65 (20831 defined) (20896 defined) Obsolete 1559 1559 0 (4.6% of total) (4.5% of total) (0.0%) Totals 32694 32773 +79 (+0.2%) 32694 (100.0%) defined 32773 (100.0%) defined 34253 inc. obs 34332 inc. obs