# molecular_function

# cellular_component
20140827: LUCA_PTN000712547 located in cytoplasm (GO:0005737)
20140827: Eukaryota_PTN001261733 located in chloroplast (GO:0009507)
20140827: cellular organisms_PTN000712549 located in chloroplast (GO:0009507)
20140827: root_PTN001566449 located in chloroplast (GO:0009507)
# biological_process
20140827: Embryophyta_PTN001566394 participates in response to ethylene (GO:0009723)
20140827: root_PTN001566377 participates in response to auxin (GO:0009733)
20140827: root_PTN001566377 participates in response to salt stress (GO:0009651)
20140827: root_PTN001566377 participates in response to gibberellin (GO:0009739)
20140827: root_PTN001566377 participates in response to cadmium ion (GO:0046686)
20140827: root_PTN001566377 participates in response to jasmonic acid (GO:0009753)
20140827: root_PTN001566377 participates in response to salicylic acid (GO:0009751)
20140827: root_PTN001566377 participates in regulation of transcription, DNA-templated (GO:0006355)
# Pruned from tree
20140827: Pruned Eubacteria_PTN000712766
# Notes



Annotation inferences using phylogenetic trees

The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).