# HISTORY 26 Apr 2016: Updated by: TOUCHUP-v1.15 19 Mar 2016: Updated by: TOUCHUP-v1.14 # molecular_function 20151112: root_PTN000780710 has function transcription factor activity, sequence-specific DNA binding (GO:0003700) 20151112: root_PTN000780710 has function sequence-specific DNA binding (GO:0043565) # cellular_component 20151112: root_PTN000780710 is found in nucleus (GO:0005634) # biological_process 20151112: root_PTN000780710 participates in regulation of transcription, DNA-templated (GO:0006355) 20151112: rosids_PTN002056743 participates in response to gibberellin (GO:0009739) 20151112: Embryophyta_PTN001587404 participates in negative regulation of seed germination (GO:0010187) 20151112: Embryophyta_PTN001587404 participates in hyperosmotic salinity response (GO:0042538) 20151112: Embryophyta_PTN001587404 participates in response to abscisic acid (GO:0009737) 20151112: Embryophyta_PTN001587404 participates in jasmonic acid mediated signaling pathway (GO:0009867) 20151112: Embryophyta_PTN001587404 participates in negative regulation of gibberellic acid mediated signaling pathway (GO:0009938) 20151112: Embryophyta_PTN001587404 participates in salicylic acid mediated signaling pathway (GO:0009863) 20151112: Embryophyta_PTN001587404 participates in regulation of reactive oxygen species metabolic process (GO:2000377) 20151112: Embryophyta_PTN001587404 participates in regulation of seed dormancy process (GO:2000033) 20151112: Embryophyta_PTN001587404 participates in response to ethylene (GO:0009723) 20151112: Embryophyta_PTN002056814 participates in regulation of secondary shoot formation (GO:2000032) 20151112: Embryophyta_PTN001270056 participates in cell differentiation (GO:0030154) 20151112: Pentapetalae_PTN002056940 participates in regulation of shoot system development (GO:0048831) 20151112: Pentapetalae_PTN002056960 participates in root hair cell tip growth (GO:0048768) 20151112: Pentapetalae_PTN002056960 participates in cell division (GO:0051301) 20151112: Pentapetalae_PTN002056960 participates in maintenance of shoot apical meristem identity (GO:0010492) 20151112: Magnoliophyta_PTN001587390 participates in leaf development (GO:0048366) 20151112: Magnoliophyta_PTN001587390 participates in negative regulation of mitotic cell cycle (GO:0045930) 20151112: Magnoliophyta_PTN001587390 participates in iron ion homeostasis (GO:0055072) 20151112: Magnoliophyta_PTN001587390 participates in asymmetric cell division (GO:0008356) 20151112: Magnoliophyta_PTN001587390 participates in radial pattern formation (GO:0009956) 20151112: Embryophyta_PTN001270047 participates in meristem initiation (GO:0010014) 20151112: Magnoliophyta_PTN002057407 participates in bundle sheath cell fate specification (GO:0090610) 20151112: Magnoliophyta_PTN002057407 participates in leaf development (GO:0048366) 20151112: Magnoliophyta_PTN000780711 participates in maintenance of protein location in nucleus (GO:0051457) 20151112: Magnoliophyta_PTN000780711 participates in asymmetric cell division (GO:0008356) 20151112: Magnoliophyta_PTN000780711 participates in leaf development (GO:0048366) 20151112: Magnoliophyta_PTN000780711 participates in radial pattern formation (GO:0009956) 20151112: Magnoliophyta_PTN000780711 participates in gravitropism (GO:0009630) 20151112: Magnoliophyta_PTN000780711 participates in bundle sheath cell fate specification (GO:0090610) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).