# HISTORY 04 Aug 2016: Saved by suzi using Paint 2.22 # molecular_function 20160502: cellular organisms_PTN001246403 has function transcription factor activity, RNA polymerase II transcription factor binding (GO:0001076) 20160502: Bacteria _PTN000768198 has function pyrophosphatase activity (GO:0016462) 20160502: Gammaproteobacteria_PTN002011044 has function guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity (GO:0008894) 20160502: Gammaproteobacteria_PTN000768205 has function exopolyphosphatase activity (GO:0004309) # cellular_component 20160502: cellular organisms_PTN001246403 is found in SLIK (SAGA-like) complex (GO:0046695) 20160502: cellular organisms_PTN001246403 is found in transcriptionally active chromatin (GO:0035327) 20160502: Archaea_PTN001246424 is NOT found in SLIK (SAGA-like) complex (GO:0046695) # biological_process 20160502: cellular organisms_PTN001246403 participates in regulation of transcription from RNA polymerase II promoter (GO:0006357) 20160502: Bacteria _PTN000768198 participates in phosphorus metabolic process (GO:0006793) 20160502: Gammaproteobacteria_PTN002011044 participates in nucleobase-containing small molecule interconversion (GO:0015949) 20160502: Gammaproteobacteria_PTN000768205 participates in polyphosphate catabolic process (GO:0006798) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).