# HISTORY 15 Nov 2016: Saved by mfeuerma using Paint 2.22 # molecular_function 20161115: root_PTN000755749 has function RNA binding (GO:0003723) 20161115: root_PTN000755749 has function endonuclease activity (GO:0004519) # cellular_component 20161115: Magnoliophyta_PTN000612749 is NOT found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000612749 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN001522156 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN001930016 is NOT found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001928988 is NOT found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001522307 is NOT found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000612720 is NOT found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000613212 is NOT found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001165646 is NOT found in mitochondrion (GO:0005739) 20161115: root_PTN000755749 is found in intracellular membrane-bounded organelle (GO:0043231) 20161115: Eukaryota_PTN001522551 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000613335 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001928902 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000612624 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001930588 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001930588 is found in chloroplast envelope (GO:0009941) 20161115: Magnoliophyta_PTN002367301 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001926067 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001925847 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001925217 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001930474 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001522406 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN001522132 is found in chloroplast (GO:0009507) 20161115: Embryophyta_PTN001165562 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN000612502 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001927789 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001927802 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN001925488 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN002367654 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001929687 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN000612387 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001930047 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001165753 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001925012 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN001925787 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN000612480 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001931197 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN000613212 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN001930026 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001931112 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001928111 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN001928396 is found in mitochondrion (GO:0005739) 20161115: node_PTN002368014 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001522222 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000613074 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN000613404 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001929163 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001930795 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN002368093 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001930662 is found in mitochondrion (GO:0005739) 20161115: rosids_PTN001930008 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001931252 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN001929110 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN001522156 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN001928171 is found in chloroplast (GO:0009507) 20161115: Pentapetalae_PTN001929742 is found in mitochondrion (GO:0005739) 20161115: Magnoliophyta_PTN001522287 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001926336 is found in mitochondrion (GO:0005739) 20161115: node_PTN002368328 is found in mitochondrion (GO:0005739) 20161115: node_PTN001930383 is found in mitochondrion (GO:0005739) 20161115: Eukaryota_PTN001931274 is found in mitochondrion (GO:0005739) 20161115: Eukaryota_PTN002368406 is found in mitochondrion (GO:0005739) 20161115: Eukaryota_PTN002368424 is found in mitochondrion (GO:0005739) 20161115: Eukaryota_PTN002368444 is found in mitochondrion (GO:0005739) 20161115: Eukaryota_PTN002368489 is found in mitochondrion (GO:0005739) 20161115: Eukaryota_PTN002368489 is found in nucleus (GO:0005634) 20161115: Magnoliophyta_PTN000613388 is found in mitochondrion (GO:0005739) 20161115: Pentapetalae_PTN001928565 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN000612684 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN002368000 is found in chloroplast (GO:0009507) 20161115: Magnoliophyta_PTN001165646 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001927570 is found in chloroplast (GO:0009507) 20161115: rosids_PTN001925926 is found in mitochondrion (GO:0005739) # biological_process 20161115: root_PTN000755749 participates in RNA modification (GO:0009451) 20161115: Eukaryota_PTN002368444 participates in RNA splicing (GO:0008380) 20161115: Eukaryota_PTN002368444 participates in mitochondrial RNA processing (GO:0000963) 20161115: Eukaryota_PTN002368444 participates in rRNA metabolic process (GO:0016072) 20161115: Eukaryota_PTN002368424 participates in positive regulation of mitochondrial translational initiation (GO:0070134) 20161115: Eukaryota_PTN002368424 participates in mitochondrial respiratory chain complex IV biogenesis (GO:0097034) 20161115: node_PTN001930383 participates in mitochondrial mRNA modification (GO:0080156) 20161115: node_PTN001930383 participates in mRNA processing (GO:0006397) 20161115: Magnoliophyta_PTN000613388 participates in RNA splicing (GO:0008380) 20161115: Magnoliophyta_PTN001522287 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN001522036 participates in cytidine to uridine editing (GO:0016554) 20161115: Pentapetalae_PTN001929742 participates in cytidine to uridine editing (GO:0016554) 20161115: Pentapetalae_PTN001929742 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Pentapetalae_PTN001929742 participates in mitochondrial RNA processing (GO:0000963) 20161115: Magnoliophyta_PTN001928171 participates in chloroplast RNA modification (GO:1900865) 20161115: Magnoliophyta_PTN001928171 participates in RNA splicing (GO:0008380) 20161115: Magnoliophyta_PTN001522152 participates in mRNA modification (GO:0016556) 20161115: Magnoliophyta_PTN001522156 participates in chloroplast RNA modification (GO:1900865) 20161115: Pentapetalae_PTN001929110 participates in mRNA modification (GO:0016556) 20161115: Magnoliophyta_PTN001522156 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Pentapetalae_PTN001928565 participates in chloroplast RNA modification (GO:1900865) 20161115: Pentapetalae_PTN001928565 participates in cytidine to uridine editing (GO:0016554) 20161115: Magnoliophyta_PTN000612684 participates in chloroplast RNA processing (GO:0031425) 20161115: Pentapetalae_PTN001931252 participates in chloroplast organization (GO:0009658) 20161115: rosids_PTN001930008 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN001930662 participates in mitochondrial mRNA processing (GO:0090615) 20161115: rosids_PTN001929163 participates in chloroplast RNA processing (GO:0031425) 20161115: Magnoliophyta_PTN000613074 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN001522222 participates in mitochondrial mRNA modification (GO:0080156) 20161115: node_PTN002368014 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN002368000 participates in chloroplast RNA processing (GO:0031425) 20161115: rosids_PTN001928111 participates in chloroplast RNA modification (GO:1900865) 20161115: rosids_PTN001930162 participates in chloroplast RNA processing (GO:0031425) 20161115: Magnoliophyta_PTN001165646 participates in chloroplast RNA processing (GO:0031425) 20161115: Magnoliophyta_PTN001165646 participates in chloroplast RNA modification (GO:1900865) 20161115: rosids_PTN001927570 participates in chloroplast RNA modification (GO:1900865) 20161115: rosids_PTN001927570 participates in cytidine to uridine editing (GO:0016554) 20161115: Pentapetalae_PTN001931197 participates in chloroplast organization (GO:0009658) 20161115: Magnoliophyta_PTN002367889 participates in mitochondrial RNA modification (GO:1900864) 20161115: Magnoliophyta_PTN001925783 participates in mRNA processing (GO:0006397) 20161115: rosids_PTN001925926 participates in mitochondrial mRNA 5'-end processing (GO:0090617) 20161115: Magnoliophyta_PTN001522484 participates in mRNA cis splicing, via spliceosome (GO:0045292) 20161115: Magnoliophyta_PTN001522484 participates in Group II intron splicing (GO:0000373) 20161115: Magnoliophyta_PTN001522484 participates in photosystem I assembly (GO:0048564) 20161115: Magnoliophyta_PTN001929924 participates in cytidine to uridine editing (GO:0016554) 20161115: Magnoliophyta_PTN001165753 participates in mitochondrial mRNA modification (GO:0080156) 20161115: rosids_PTN001930047 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Pentapetalae_PTN001927873 participates in mRNA processing (GO:0006397) 20161115: Magnoliophyta_PTN000612387 participates in chloroplast RNA modification (GO:1900865) 20161115: Pentapetalae_PTN001930986 participates in mitochondrial RNA modification (GO:1900864) 20161115: Pentapetalae_PTN001929687 participates in chloroplast RNA modification (GO:1900865) 20161115: Pentapetalae_PTN001929687 participates in chloroplast RNA processing (GO:0031425) 20161115: Magnoliophyta_PTN002367654 participates in mRNA splicing, via spliceosome (GO:0000398) 20161115: Magnoliophyta_PTN001927789 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN000612502 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN000612502 participates in cytidine to uridine editing (GO:0016554) 20161115: Magnoliophyta_PTN001522132 participates in chloroplast RNA processing (GO:0031425) 20161115: Pentapetalae_PTN001927707 participates in cytidine to uridine editing (GO:0016554) 20161115: Pentapetalae_PTN001925847 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN001926067 participates in mitochondrial translation (GO:0032543) 20161115: Magnoliophyta_PTN002367301 participates in mitochondrial mRNA modification (GO:0080156) 20161115: Magnoliophyta_PTN001928902 participates in RNA splicing (GO:0008380) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES MAF: RNA-modification proteins. Mostly plants with many duplications, so can be mitochondrial or chloroplastic. The same for the processes. Only few annottaions could be propagated to the root. # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).