# HISTORY
26 Mar 2016: Updated by: TOUCHUP-v1.15
16 Mar 2016: Updated by: TOUCHUP-v1.14

# molecular_function
20150619: Eukaryota_PTN000411325 contributes to function thiol-dependent ubiquitin-specific protease activity (GO:0004843) 

# cellular_component
20150619: Eukaryota_PTN000411325 is found in Cdc48p-Npl4p-Vms1p AAA ATPase complex (GO:0036266) 

# biological_process
20150619: Eukaryota_PTN000411325 participates in ER-associated ubiquitin-dependent protein catabolic process (GO:0030433) 
20150619: Eukaryota_PTN000411325 participates in mitochondria-associated ubiquitin-dependent protein catabolic process (GO:0072671) 
20150619: Eukaryota_PTN000411325 participates in nucleus-associated proteasomal ubiquitin-dependent protein catabolic process (GO:0071630) 

# WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED

# NOTES

# REFERENCE
Annotation inferences using phylogenetic trees
The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).