# HISTORY 27 Jan 2017: Saved by pgaudet using Paint v2.29 on 27 Jan 2017 using PANTHER version UPL 11.0 # molecular_function 20170127: root_PTN001779392 has function guanyl-nucleotide exchange factor activity (GO:0005085) 20170127: root_PTN001779392 has function protein complex scaffold (GO:0032947) # cellular_component 20170127: Chloroflexus aurantiacus J-10-fl_A9WFJ7 is NOT found in Ragulator complex (GO:0071986) 20170127: Methanocaldococcus jannaschii DSM 2661_Q58124 is NOT found in Ragulator complex (GO:0071986) 20170127: Methanocaldococcus jannaschii DSM 2661_Q57758 is NOT found in Ragulator complex (GO:0071986) 20170127: Methanocaldococcus jannaschii DSM 2661_Q58736 is NOT found in Ragulator complex (GO:0071986) 20170127: Bacteria _PTN001779402 is NOT found in Ragulator complex (GO:0071986) 20170127: Eukaryota_PTN000999949 is found in Ragulator complex (GO:0071986) 20170127: root_PTN001779392 is found in intracellular (GO:0005622) # biological_process 20170127: root_PTN001779392 participates in cellular response to amino acid stimulus (GO:0071230) 20170127: root_PTN001779392 participates in positive regulation of TOR signaling (GO:0032008) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).