# HISTORY 24 Jun 2016: Saved by mfeuerma using Paint 2.0-beta19 # molecular_function 20160623: Eukaryota_PTN000329394 has function RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) 20160623: Embryophyta_PTN001778480 has LOST/MODIFIED function RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) 20160623: Embryophyta_PTN001778480 has function mannan synthase activity (GO:0051753) 20160623: Embryophyta_PTN001410239 has LOST/MODIFIED function RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) 20160623: Embryophyta_PTN001410239 has function mannan synthase activity (GO:0051753) 20160623: Embryophyta_PTN000999295 has LOST/MODIFIED function RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) 20160623: Embryophyta_PTN000999295 has function cellulose synthase activity (GO:0016759) 20160623: Embryophyta_PTN001778885 has LOST/MODIFIED function RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) 20160623: Embryophyta_PTN001778885 has function cellulose synthase activity (GO:0016759) 20160623: Embryophyta_PTN001410244 has LOST/MODIFIED function RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) 20160623: Embryophyta_PTN001410244 has function mannan synthase activity (GO:0051753) # cellular_component 20160623: Embryophyta_PTN000999308 is found in nucleus (GO:0005634) 20160623: Embryophyta_PTN001778885 is found in cell wall (GO:0005618) 20160623: Embryophyta_PTN000999295 is found in plasma membrane (GO:0005886) 20160623: Embryophyta_PTN000999295 is found in Golgi apparatus (GO:0005794) 20160623: Embryophyta_PTN001410239 is found in Golgi apparatus (GO:0005794) 20160623: Embryophyta_PTN001778480 is found in plasma membrane (GO:0005886) 20160623: Embryophyta_PTN001778480 is found in Golgi apparatus (GO:0005794) 20160623: Embryophyta_PTN001490088 is found in nucleus (GO:0005634) 20160623: Embryophyta_PTN001410244 is found in Golgi apparatus (GO:0005794) 20160623: Embryophyta_PTN001410244 is found in plasma membrane (GO:0005886) 20160623: node_PTN000329443 is found in nucleus (GO:0005634) # biological_process 20160623: Opisthokonta_PTN000329396 participates in positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response (GO:0006990) 20160623: node_PTN000329443 participates in transcription from RNA polymerase II promoter (GO:0006366) 20160623: Magnoliophyta_PTN001410261 participates in positive regulation of transcription, DNA-templated (GO:0045893) 20160623: Embryophyta_PTN001490088 participates in positive regulation of transcription, DNA-templated (GO:0045893) 20160623: Magnoliophyta_PTN000792730 participates in plant-type primary cell wall biogenesis (GO:0009833) 20160623: Embryophyta_PTN000999295 participates in cellulose biosynthetic process (GO:0030244) 20160624: Embryophyta_PTN000999308 participates in regulation of transcription, DNA-templated (GO:0006355) 20160624: Embryophyta_PTN001778885 participates in plant-type secondary cell wall biogenesis (GO:0009834) 20160624: Embryophyta_PTN001778885 participates in cellulose biosynthetic process (GO:0030244) 20160624: Embryophyta_PTN000999295 participates in plant-type primary cell wall biogenesis (GO:0009833) 20160624: Embryophyta_PTN001410239 participates in plant-type cell wall organization or biogenesis (GO:0071669) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).