# HISTORY 09 Jul 2016: Updated by: TOUCHUP-v1.19 04 May 2016: Saved by mfeuerma using Paint 2.0-beta18 30 Jun 2016: Updated by: TOUCHUP-v1.19 # molecular_function 20160504: node_PTN000941828 has function enoyl-CoA hydratase activity (GO:0004300) 20160504: node_PTN000235252 has function 1,4-dihydroxy-2-naphthoyl-CoA synthase activity (GO:0008935) 20160504: node_PTN000234638 has function 3-hydroxyisobutyryl-CoA hydrolase activity (GO:0003860) 20160504: node_PTN000941805 has function isomerase activity (GO:0016853) 20160504: node_PTN000235141 has function dodecenoyl-CoA delta-isomerase activity (GO:0004165) # cellular_component 20160504: Opisthokonta_PTN000234585 is found in mitochondrion (GO:0005739) 20160504: Embryophyta_PTN000941801 is found in peroxisome (GO:0005777) 20160504: node_PTN000941570 is found in mitochondrion (GO:0005739) 20160504: Embryophyta_PTN000941892 is found in peroxisome (GO:0005777) 20160504: Eukaryota_PTN001733034 is found in peroxisome (GO:0005777) 20160504: node_PTN001733048 is found in cytosol (GO:0005829) 20160504: Eukaryota_PTN000234640 is found in mitochondrion (GO:0005739) 20160504: Bacteria _PTN000941746 is found in cytosol (GO:0005829) 20160504: node_PTN001733184 is found in cytosol (GO:0005829) 20160504: Eukaryota_PTN000941457 is found in cytosol (GO:0005829) 20160504: node_PTN000234869 is found in mitochondrion (GO:0005739) 20160504: Dikarya_PTN000941438 is found in peroxisome (GO:0005777) 20160504: Deuterostomia_PTN000234743 is found in nucleus (GO:0005634) 20160504: Eukaryota_PTN000234871 is found in peroxisome (GO:0005777) 20160504: Eukaryota_PTN000234959 is found in mitochondrion (GO:0005739) 20160504: Bacteria _PTN000941847 is NOT found in mitochondrion (GO:0005739) 20160504: node_PTN001732946 is NOT found in mitochondrion (GO:0005739) 20160504: Bacteria _PTN000747586 is NOT found in mitochondrion (GO:0005739) # biological_process 20160504: node_PTN000234583 participates in fatty acid catabolic process (GO:0009062) 20160504: node_PTN000941828 participates in fatty acid beta-oxidation (GO:0006635) 20160504: node_PTN000235252 participates in ketone biosynthetic process (GO:0042181) 20160504: Eukaryota_PTN001733034 participates in phylloquinone biosynthetic process (GO:0042372) 20160504: Bacteria _PTN000235258 participates in menaquinone biosynthetic process (GO:0009234) 20160504: node_PTN000234638 participates in fatty acid beta-oxidation (GO:0006635) 20160504: Dikarya_PTN000941438 participates in fatty acid beta-oxidation (GO:0006635) 20160504: Euteleostomi_PTN000234746 participates in spermatogenesis (GO:0007283) 20160504: Proteobacteria_PTN000234939 participates in isoprenoid catabolic process (GO:0008300) 20160504: node_PTN000235141 participates in fatty acid beta-oxidation (GO:0006635) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES MAF: Almost all MYCTU proteins are annotated to plasma membrane or cell wall, even when ECOLI ortologs are cytosolic, that's why I never propagate CCs from MYCTU. # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).