GO Monthly Release Notes for November 2003
========================
Generated on Tue Dec 9 12:10:47 2003
Files used:
component old: 2.411 new: 2.430
function old: 2.893 new: 2.912
process old: 2.1000 new: 2.1031
definitions old: 2.1483 new:
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (20 new terms)
GO:0001401 GO:0005623 SGD D 795484 mitochondrial sorting and assembly machinery complex
GO:0005739
GO:0001772 GO:0005886 MGI D 835994 immunological synapse
GO:0010170 GO:0005941 TAIR D 829247 glucose-1-phosphate adenylyltransferase complex
GO:0030863 GO:0005622 MAH D 815058 cortical cytoskeleton
GO:0005856
GO:0030864 GO:0005622 MAH D 815058 cortical actin cytoskeleton
GO:0005856
GO:0030867 GO:0005623 MAH D 796726 rough endoplasmic reticulum membrane
GO:0005783
GO:0030868 GO:0005623 MAH D 796726 smooth endoplasmic reticulum membrane
GO:0005783
GO:0030869 GO:0005654 MAH D 817175 RENT complex
GO:0030870 GO:0005634 MAH D 817268 Mre11 complex
GO:0030871 GO:0005840 MAH D 804650 cytosolic ribosome (sensu Archaea)
GO:0030872 GO:0005840 MAH D 804650 cytosolic large ribosomal subunit (sensu Archaea)
GO:0030873 GO:0005840 MAH D 804650 cytosolic small ribosomal subunit (sensu Archaea)
GO:0030874 GO:0000228 MAH D 819373 nucleolar chromatin
GO:0005694
GO:0030875 GO:0000228 MAH D 819373 rDNA protrusion
GO:0005694
GO:0030876 GO:0005623 MAH D 835700 interleukin-20 receptor complex
GO:0005886
GO:0030877 GO:0005737 MAH D 845952 beta-catenin destruction complex
GO:0030880 GO:0005622 MAH D 839981 RNA polymerase complex
GO:0035059 GO:0005654 FB D 837394 RCAF complex
GO:0035060 GO:0005654 FB D 816689 brahma complex
GO:0043033 GO:0005615 JL D 832922 isoamylase complex
New definitions for component ontology terms (5 new definitions)
GO:0005858, axonemal dynein complex
GO:0005868, cytoplasmic dynein complex
GO:0008623, chromatin accessibility complex
GO:0016589, NURF complex
GO:0016590, ACF complex
New term merges in component ontology
GO:0005855 has been merged into GO:0005786, signal recognition particle
Term movements in component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0000343, plastid-encoded plastid RNA polymerase complex A
+ GO:0000344, plastid-encoded plastid RNA polymerase complex B
+ GO:0000345, cytosolic DNA-directed RNA polymerase (sensu Bacteria)
+ GO:0005665, DNA-directed RNA polymerase II, core complex
+ GO:0005666, DNA-directed RNA polymerase III complex
+ GO:0005736, DNA-directed RNA polymerase I complex
- GO:0005967, pyruvate dehydrogenase complex (sensu Eukarya)
+ GO:0010005, cortical microtubule (sensu Viridiplantae)
- GO:0017133, electron transfer flavoprotein complex (sensu Eukarya)
- GO:0019910, pyruvate dehydrogenase (lipoamide) phosphatase (sensu Eukarya)
- GO:0045247, electron transfer flavoprotein complex (sensu Bacteria)
- GO:0045249, pyruvate dehydrogenase (lipoamide) phosphatase (sensu Bacteria)
- GO:0045250, pyruvate dehydrogenase complex (sensu Bacteria)
- GO:0045251, electron transfer flavoprotein complex
- GO:0045253, pyruvate dehydrogenase (lipoamide) phosphatase complex
- GO:0045254, pyruvate dehydrogenase complex
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0005784, translocon
+ GO:0005785, signal recognition particle receptor complex
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0005786, signal recognition particle
+ GO:0005967, pyruvate dehydrogenase complex (sensu Eukarya)
+ GO:0017133, electron transfer flavoprotein complex (sensu Eukarya)
+ GO:0019910, pyruvate dehydrogenase (lipoamide) phosphatase (sensu Eukarya)
+ GO:0045251, electron transfer flavoprotein complex
+ GO:0045253, pyruvate dehydrogenase (lipoamide) phosphatase complex
+ GO:0045254, pyruvate dehydrogenase complex
Terms movements under GO Slim term 'endoplasmic reticulum ; GO:0005783'
- GO:0005786, signal recognition particle
New terms in function ontology (15 new terms)
GO:0010173 GO:0005216 TAIR D 832054 depolarization-activated voltage-gated calcium channel activity
GO:0010174 GO:0005215 TAIR D 832054 nucleoside transporter activity, against a concentration gradient
GO:0010175 GO:0005215 TAIR D 832054 sphingosine transporter activity
GO:0010176 GO:0003824 TAIR D 832054 homogentisate phytyltransferase activity
GO:0010177 GO:0003824 TAIR D 832054 methylthioalkylmalate synthase activity
GO:0010178 GO:0003824 TAIR D 832054 IAA-amino acid conjugate hydrolase activity
GO:0010179 GO:0003824 TAIR D 832054 IAA-Ala conjugate hydrolase activity
GO:0010180 GO:0005515 TAIR D 832054 thioglucosidase binding activity
GO:0010181 GO:0005488 TAIR D 832054 FMN binding
GO:0030881 GO:0005515 MAH D 837176 beta-2-microglobulin binding
GO:0030882 GO:0003793 MAH D 837181 lipid antigen binding
GO:0005488
GO:0008289
GO:0030883 GO:0003793 MAH D 837181 endogenous lipid antigen binding
GO:0005488
GO:0008289
GO:0030884 GO:0003793 MAH D 837181 exogenous lipid antigen binding
GO:0005488
GO:0008289
GO:0050749 GO:0005102 AI D 850263 apolipoprotein E receptor binding
GO:0050750 GO:0005102 AI D 850260 low-density lipoprotein receptor binding
New obsoletions in function ontology
GO:0003775, axonemal motor activity: includes cellular component information.
GO:0003776, muscle motor activity: includes anatomy information.
GO:0004323, multicopper ferroxidase iron transport mediator activity: represents a multifunctional gene product.
GO:0008350, kinetochore motor activity: includes cellular component information.
GO:0008580, cytoskeletal regulator activity: 'cytoskeleton' is not an activity, and regulation of its distribution or modification belongs in the process ontology.
GO:0015596, glycine betaine/proline porter activity: represents a multifunctional gene product.
GO:0015597, histidine/arginine/lysine/ornithine porter activity: represents a multifunctional gene product.
GO:0015600, glutamate/aspartate porter activity: represents a multifunctional gene product.
GO:0015601, cystine/diaminopimelate porter activity: represents a multifunctional gene product.
GO:0015602, leucine/isoleucine/valine porter activity: represents a multifunctional gene product.
GO:0016146, protein-synthesizing GTPase activity, initiation: contains both process and function information.
GO:0016147, protein-synthesizing GTPase activity, elongation: contains both process and function information.
GO:0016148, protein-synthesizing GTPase activity, termination: contains both process and function information.
GO:0016326, kinesin motor activity: represents a gene product.
GO:0016733, iron-iron nitrogenase activity: represents a cellular component.
GO:0016734, molybdenum-iron nitrogenase activity: represents a cellular component.
GO:0016735, vanadium-iron nitrogenase activity: represents a cellular component.
GO:0042027, cyclophilin-type peptidyl-prolyl cis-trans isomerase activity: is contains gene product specific characteristics.
Term name changes in function ontology
GO:0000362: 1st U2-type spliceosomal transesterification activity --> first U2-type spliceosomal transesterification activity
GO:0000363: 1st U12-type spliceosomal transesterification activity --> first U12-type spliceosomal transesterification activity
GO:0000364: 2nd U2-type spliceosomal transesterification activity --> second U2-type spliceosomal transesterification activity
GO:0000367: 2nd U12-type spliceosomal transesterification activity --> second U12-type spliceosomal transesterification activity
GO:0000384: 1st spliceosomal transesterification activity --> first spliceosomal transesterification activity
GO:0000386: 2nd spliceosomal transesterification activity --> second spliceosomal transesterification activity
GO:0004079: biotin-[methylmalonyl-CoA-carboxyltransferase] ligase activity --> biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity
GO:0008569: minus-end-directed kinesin ATPase activity --> minus-end-directed microtubule motor activity
GO:0008574: plus-end-directed kinesin ATPase activity --> plus-end-directed microtubule motor activity
GO:0008795: NAD synthase (AMP-forming) activity --> NAD+ synthase activity
GO:0008901: hydrogenase activity --> ferredoxin hydrogenase activity
GO:0015395: equilibrative nucleoside transporter activity --> nucleoside transporter activity, down a concentration gradient
GO:0016297: [acyl-carrier protein] hydrolase activity --> acyl-[acyl-carrier protein] hydrolase activity
New definitions for function ontology terms (19 new definitions)
GO:0003775, axonemal motor activity
GO:0003776, muscle motor activity
GO:0004900, erythropoietin receptor activity
GO:0004903, growth hormone receptor activity
GO:0004904, interferon receptor activity
GO:0004906, interferon-gamma receptor activity
GO:0004907, interleukin receptor activity
GO:0005049, nuclear export signal receptor activity
GO:0005245, voltage-gated calcium channel activity
GO:0008350, kinetochore motor activity
GO:0008580, cytoskeletal regulator activity
GO:0016502, nucleotide receptor activity
GO:0019961, interferon binding
GO:0042021, granulocyte macrophage colony-stimulating factor complex binding
GO:0043021, ribonucleoprotein binding
GO:0043027, caspase inhibitor activity
GO:0043028, caspase regulator activity
GO:0048273, mitogen-activated protein kinase p38 binding
GO:0050570, 4-hydroxythreonine-4-phosphate dehydrogenase activity
New term merges in function ontology
GO:0005023 has been merged into GO:0005006, epidermal growth factor receptor activity
GO:0009043 has been merged into GO:0000310, xanthine phosphoribosyltransferase activity
GO:0016294 has been merged into GO:0047381, dodecanoyl-[acyl-carrier protein] hydrolase activity
GO:0016965 has been merged into GO:0008795, NAD+ synthase activity
Term movements in function ontology:
Terms movements under GO Slim term 'motor activity ; GO:0003774'
- GO:0003775, axonemal motor activity
- GO:0003776, muscle motor activity
- GO:0008350, kinetochore motor activity
- GO:0016326, kinesin motor activity
Terms movements under GO Slim term 'catalytic activity ; GO:0003824'
- GO:0004323, multicopper ferroxidase iron transport mediator activity
- GO:0015596, glycine betaine/proline porter activity
- GO:0015597, histidine/arginine/lysine/ornithine porter activity
- GO:0015600, glutamate/aspartate porter activity
- GO:0015601, cystine/diaminopimelate porter activity
- GO:0015602, leucine/isoleucine/valine porter activity
- GO:0016146, protein-synthesizing GTPase activity, initiation
- GO:0016147, protein-synthesizing GTPase activity, elongation
- GO:0016148, protein-synthesizing GTPase activity, termination
- GO:0016733, iron-iron nitrogenase activity
- GO:0016734, molybdenum-iron nitrogenase activity
- GO:0016735, vanadium-iron nitrogenase activity
- GO:0042027, cyclophilin-type peptidyl-prolyl cis-trans isomerase activity
Terms movements under GO Slim term 'protein kinase activity ; GO:0004672'
- GO:0004901, granulocyte macrophage colony-stimulating factor receptor activity
- GO:0004902, granulocyte colony-stimulating factor receptor activity
- GO:0008019, macrophage receptor activity
Terms movements under GO Slim term 'transporter activity ; GO:0005215'
- GO:0004323, multicopper ferroxidase iron transport mediator activity
- GO:0015596, glycine betaine/proline porter activity
- GO:0015597, histidine/arginine/lysine/ornithine porter activity
- GO:0015600, glutamate/aspartate porter activity
- GO:0015601, cystine/diaminopimelate porter activity
- GO:0015602, leucine/isoleucine/valine porter activity
Terms movements under GO Slim term 'translation factor activity, nucleic acid binding ; GO:0008135'
- GO:0008547, protein-synthesizing GTPase activity
- GO:0016146, protein-synthesizing GTPase activity, initiation
- GO:0016147, protein-synthesizing GTPase activity, elongation
- GO:0016148, protein-synthesizing GTPase activity, termination
Terms movements under GO Slim term 'cytoskeletal regulator activity ; GO:0008580'
- GO:0008580, cytoskeletal regulator activity
New terms in process ontology (69 new terms)
GO:0001402 GO:0007275 SGD D 796296 signal transduction during filamentous growth
GO:0016043
GO:0040007
GO:0001403 GO:0007275 SGD D 796296 invasive growth (sensu Saccharomyces)
GO:0016043
GO:0040007
GO:0001404 GO:0007582 SGD D invasive growth
GO:0001767 GO:0007010 MGI D 835994 establishment of lymphocyte polarity
GO:0007582
GO:0009605
GO:0009607
GO:0009628
GO:0001768 GO:0007010 MGI D 835994 establishment of T-cell polarity
GO:0007582
GO:0009605
GO:0009607
GO:0009628
GO:0001769 GO:0007010 MGI D 835994 establishment of B-cell polarity
GO:0007582
GO:0009605
GO:0009607
GO:0009628
GO:0001770 GO:0007010 MGI D 835994 establishment of natural killer cell polarity
GO:0007582
GO:0009605
GO:0009607
GO:0009628
GO:0001771 GO:0006950 MGI D 835994 formation of immunological synapse
GO:0007582
GO:0009605
GO:0009607
GO:0001773 GO:0007582 MGI D 836471 dendritic cell activation
GO:0009607
GO:0001774 GO:0007582 MGI D 836471 microglial cell activation
GO:0009607
GO:0001775 GO:0007582 MGI D 836474 cell activation
GO:0001776 GO:0019725 MGI D immune cell homeostasis
GO:0001777 GO:0007582 MGI D T-cell homeostatic proliferation
GO:0008283
GO:0009607
GO:0019725
GO:0001778 GO:0006950 MGI D plasma membrane repair
GO:0006996
GO:0009605
GO:0016043
GO:0010182 GO:0007165 TAIR D 836136 sugar mediated signaling
GO:0009719
GO:0010183 GO:0007582 TAIR D 836136 pollen tube guidance
GO:0010184 GO:0006810 TAIR D 836136 cytokinin transport
GO:0010185 GO:0006950 TAIR D 836136 regulation of cellular defense response
GO:0009605
GO:0009607
GO:0010186 GO:0006950 TAIR D 836136 positive regulation of cellular defense response
GO:0009605
GO:0009607
GO:0010187 GO:0007275 TAIR D 836136 negative regulation of seed germination
GO:0007582
GO:0030154
GO:0010188 GO:0009628 TAIR D 836136 response to microbial phytotoxin
GO:0010189 GO:0008152 TAIR D 836136 vitamin E biosynthesis
GO:0009058
GO:0010190 GO:0019538 TAIR D 836136 cytochrome b6f complex biogenesis
GO:0010191 GO:0007275 TAIR D 836136 mucilage metabolism
GO:0007582
GO:0008152
GO:0030154
GO:0010192 GO:0007275 TAIR D 836136 mucilage biosynthesis
GO:0007582
GO:0008152
GO:0009058
GO:0030154
GO:0010193 GO:0009628 TAIR D 836136 response to ozone
GO:0010194 GO:0008152 TAIR D 836136 microRNA metabolism
GO:0010195 GO:0008152 TAIR D 836136 microRNA biosynthesis
GO:0009058
GO:0010196 GO:0009628 TAIR D 836136 nonphotochemical quenching
GO:0010197 GO:0000003 TAIR D 836136 polar nuclei fusion
GO:0010198 GO:0000003 TAIR D 836136 synergid cell death
GO:0008219
GO:0010199 GO:0007275 TAIR D 836136 organ boundary specification
GO:0010200 GO:0009719 TAIR D 836136 response to chitin
GO:0010201 GO:0009628 TAIR D response to high irradiance
GO:0010202 GO:0009628 TAIR D response to low fluence
GO:0010203 GO:0009628 TAIR D response to very low fluence
GO:0010204 GO:0007165 TAIR D 809521 defense response signaling pathway, resistance gene-independent
GO:0009607
GO:0030865 GO:0007010 MAH D 815058 cortical cytoskeleton organization and biogenesis
GO:0030866 GO:0007010 MAH D 815058 cortical actin cytoskeleton organization and biogenesis
GO:0030878 GO:0007275 MAH D 840123 thyroid gland development
GO:0030879 GO:0007275 MAH D 848163 mammary gland development
GO:0030885 GO:0007582 MAH D 837215 regulation of dendritic cell activation
GO:0009607
GO:0030886 GO:0007582 MAH D 837215 negative regulation of dendritic cell activation
GO:0009607
GO:0030887 GO:0007582 MAH D 837215 positive regulation of dendritic cell activation
GO:0009607
GO:0030888 GO:0007582 MAH D 839824 regulation of B-cell proliferation
GO:0008283
GO:0009607
GO:0030889 GO:0007582 MAH D 839824 negative regulation of B-cell proliferation
GO:0008283
GO:0009607
GO:0030890 GO:0007582 MAH D 839824 positive regulation of B-cell proliferation
GO:0008283
GO:0009607
GO:0043026 GO:0008219 JL D regulation of caspase activation
GO:0043029 GO:0019725 JL D 833046 T-cell homeostasis
GO:0043030 GO:0006950 JL D 833048 regulation of macrophage activation
GO:0007582
GO:0009605
GO:0009607
GO:0043031 GO:0006950 JL D 833048 negative regulation of macrophage activation
GO:0007582
GO:0009605
GO:0009607
GO:0043032 GO:0006950 JL D 833048 positive regulation of macrophage activation
GO:0007582
GO:0009605
GO:0009607
GO:0048271 GO:0030154 JIC D 817264 trichome differentiation
GO:0048272 GO:0030154 JIC D 817264 trichome morphogenesis
GO:0048274 GO:0030154 JIC D 817264 trichome branching
GO:0048275 GO:0006464 JIC D N-terminal peptidyl-arginine acetylation
GO:0050746 GO:0019538 AI D 850263 regulation of lipoprotein metabolism
GO:0050747 GO:0019538 AI D 850263 positive regulation of lipoprotein metabolism
GO:0050748 GO:0019538 AI D 850263 negative regulation of lipoprotein metabolism
GO:0050751 GO:0006412 AI D 840071 fractalkine biosynthesis
GO:0009607
GO:0019538
GO:0050752 GO:0006412 AI D 840071 regulation of fractalkine biosynthesis
GO:0008152
GO:0009058
GO:0009607
GO:0019538
GO:0050753 GO:0006412 AI D 840071 negative regulation of fractalkine biosynthesis
GO:0008152
GO:0009058
GO:0009607
GO:0019538
GO:0050754 GO:0006412 AI D 840071 positive regulation of fractalkine biosynthesis
GO:0008152
GO:0009058
GO:0009607
GO:0019538
GO:0050755 GO:0009607 AI D 840071 chemokine metabolism
GO:0019538
GO:0050756 GO:0009607 AI D 840071 fractalkine metabolism
GO:0019538
GO:0050757 GO:0006412 AI D 850749 thymidylate synthase biosynthesis
GO:0050758 GO:0006412 AI D 850749 regulation of thymidylate synthase biosynthesis
GO:0008152
GO:0009058
GO:0050759 GO:0006412 AI D 850749 positive regulation of thymidylate synthase biosynthesis
GO:0008152
GO:0009058
GO:0050760 GO:0006412 AI D 850749 negative regulation of thymidylate synthase biosynthesis
GO:0008152
GO:0009058
New obsoletions in process ontology
GO:0000190, MAPKKK cascade (pseudohyphal growth): is a gene product specific term.
GO:0000191, activation of MAPKKK (pseudohyphal growth): is a gene product specific term.
GO:0000192, activation of MAPKK (pseudohyphal growth): is a gene product specific term.
GO:0000193, activation of MAPK (pseudohyphal growth): is a gene product specific term.
GO:0000194, inactivation of MAPK (pseudohyphal growth): is a gene product specific term.
GO:0000195, nuclear translocation of MAPK (pseudohyphal growth): is a gene product specific term.
GO:0007125, invasive growth: has been split into two new terms.
GO:0007149, colony morphology: describes a phenotype rather than a biological goal.
GO:0019268, glutamate biosynthesis, using glutamate dehydrogenase (NAD(P)+): represents a molecular function.
GO:0019269, glutamate biosynthesis, using glutamate synthase (NADPH): refers to a molecular function.
GO:0019443, tryptophan catabolism, using tryptophanase: refers to a one-step pathway.
Term name changes in process ontology
GO:0000349: formation of catalytic spliceosome for 1st transesterification step --> formation of catalytic spliceosome for first transesterification step
GO:0000350: formation of catalytic spliceosome for 2nd transesterification step --> formation of catalytic spliceosome for second transesterification step
GO:0000356: U2-type catalytic spliceosome formation for 1st transesterification step --> U2-type catalytic spliceosome formation for first transesterification step
GO:0000357: U12-type catalytic spliceosome formation for 1st transesterification step --> U12-type catalytic spliceosome formation for first transesterification step
GO:0000358: formation of catalytic U2-type spliceosome for 2nd transesterification step --> formation of catalytic U2-type spliceosome for second transesterification step
GO:0000359: formation of catalytic U12-type spliceosome for 2nd transesterification step --> formation of catalytic U12-type spliceosome for second transesterification step
GO:0010026: trichome differentiation --> trichome differentiation (sensu Magnoliophyta)
GO:0010090: trichome morphogenesis --> trichome morphogenesis (sensu Magnoliophyta)
GO:0010091: trichome branching --> trichome branching (sensu Magnoliophyta)
GO:0030030: cell surface structure organization and biogenesis --> cell projection organization and biogenesis
GO:0030031: formation of a cell surface projection --> cell projection biogenesis
GO:0045321: cell activation --> immune cell activation
GO:0045619: regulation of lymphocytic blood cell differentiation --> regulation of lymphocyte differentiation
GO:0045620: negative regulation of lymphocytic blood cell differentiation --> negative regulation of lymphocyte differentiation
GO:0045621: positive regulation of lymphocytic blood cell differentiation --> positive regulation of lymphocyte differentiation
New definitions for process ontology terms (17 new definitions)
GO:0006919, caspase activation
GO:0007125, invasive growth
GO:0007149, colony morphology
GO:0007172, signal complex formation
GO:0016584, nucleosome spacing
GO:0019724, B-cell mediated immunity
GO:0030448, hyphal growth
GO:0042116, macrophage activation
GO:0042118, endothelial cell activation
GO:0042119, neutrophil activation
GO:0050739, peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
GO:0050740, protein-FMN linkage via O3-riboflavin phosphoryl-L-threonine
GO:0050741, protein-FMN linkage via O3-riboflavin phosphoryl-L-serine
GO:0050742, protein-FMN linkage via S-(4a-FMN)-L-cysteine
GO:0050743, protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine
GO:0050744, protein-FMN linkage via 3'-(8alpha-FMN)-L-histidine
GO:0050745, peptide cross-linking via L-cysteinyl-5-imidazolinone glycine
Term movements in process ontology:
Terms movements under GO Slim term 'amino acid and derivative metabolism ; GO:0006519'
- GO:0019268, glutamate biosynthesis, using glutamate dehydrogenase (NAD(P)+)
- GO:0019269, glutamate biosynthesis, using glutamate synthase (NADPH)
- GO:0019443, tryptophan catabolism, using tryptophanase
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
- GO:0000190, MAPKKK cascade (pseudohyphal growth)
- GO:0000191, activation of MAPKKK (pseudohyphal growth)
- GO:0000192, activation of MAPKK (pseudohyphal growth)
- GO:0000193, activation of MAPK (pseudohyphal growth)
- GO:0000194, inactivation of MAPK (pseudohyphal growth)
- GO:0000195, nuclear translocation of MAPK (pseudohyphal growth)
Terms movements under GO Slim term 'development ; GO:0007275'
- GO:0000190, MAPKKK cascade (pseudohyphal growth)
- GO:0000191, activation of MAPKKK (pseudohyphal growth)
- GO:0000192, activation of MAPKK (pseudohyphal growth)
- GO:0000193, activation of MAPK (pseudohyphal growth)
- GO:0000194, inactivation of MAPK (pseudohyphal growth)
- GO:0000195, nuclear translocation of MAPK (pseudohyphal growth)
- GO:0007125, invasive growth
- GO:0007149, colony morphology
+ GO:0009296, flagella biogenesis
+ GO:0009297, fimbrial biogenesis
+ GO:0030030, cell projection organization and biogenesis
+ GO:0030031, cell projection biogenesis
+ GO:0030032, lamellipodium formation
+ GO:0030033, microvillus assembly
+ GO:0030034, microvillar actin bundle formation
+ GO:0030035, microspike formation
+ GO:0030092, regulation of flagella biosynthesis
+ GO:0035058, sensory cilium biogenesis
+ GO:0042073, intraflagellar transport
+ GO:0042384, cilium biogenesis
+ GO:0045718, negative regulation of flagella biosynthesis
+ GO:0045724, positive regulation of flagella biosynthesis
+ GO:0046847, filopodium formation
Terms movements under GO Slim term 'physiological processes ; GO:0007582'
+ GO:0030098, lymphocyte differentiation
+ GO:0030101, natural killer cell activation
+ GO:0030183, B-cell differentiation
+ GO:0030217, T-cell differentiation
+ GO:0042093, T-helper cell differentiation
+ GO:0042098, T-cell proliferation
+ GO:0042100, B-cell proliferation
+ GO:0042102, positive regulation of T-cell proliferation
+ GO:0042103, positive regulation of resting T-cell proliferation
+ GO:0042104, positive regulation of activated T-cell proliferation
+ GO:0042110, T-cell activation
+ GO:0042113, B-cell activation
+ GO:0042116, macrophage activation
+ GO:0042117, monocyte activation
+ GO:0042118, endothelial cell activation
+ GO:0042119, neutrophil activation
+ GO:0042129, regulation of T-cell proliferation
+ GO:0042130, negative regulation of T-cell proliferation
+ GO:0042492, gamma-delta T-cell differentiation
+ GO:0042722, alpha-beta T-cell activation by superantigen
+ GO:0043011, dendritic cell differentiation
+ GO:0045058, T-cell selection
+ GO:0045059, positive thymic T-cell selection
+ GO:0045060, negative thymic T-cell selection
+ GO:0045061, thymic T-cell selection
+ GO:0045062, extrathymic T-cell selection
+ GO:0045063, T-helper 1 cell differentiation
+ GO:0045064, T-helper 2 cell differentiation
+ GO:0045065, cytotoxic T-cell differentiation
+ GO:0045066, suppressor T-cell differentiation
+ GO:0045067, positive extrathymic T-cell selection
+ GO:0045068, negative extrathymic T-cell selection
+ GO:0045190, isotype switching
+ GO:0045191, regulation of isotype switching
+ GO:0045321, immune cell activation
+ GO:0045575, basophil activation
+ GO:0045576, mast cell activation
+ GO:0045577, regulation of B-cell differentiation
+ GO:0045578, negative regulation of B-cell differentiation
+ GO:0045579, positive regulation of B-cell differentiation
+ GO:0045580, regulation of T-cell differentiation
+ GO:0045581, negative regulation of T-cell differentiation
+ GO:0045582, positive regulation of T-cell differentiation
+ GO:0045583, regulation of cytotoxic T-cell differentiation
+ GO:0045584, negative regulation of cytotoxic T-cell differentiation
+ GO:0045585, positive regulation of cytotoxic T-cell differentiation
+ GO:0045586, regulation of gamma-delta T-cell differentiation
+ GO:0045587, negative regulation of gamma-delta T-cell differentiation
+ GO:0045588, positive regulation of gamma-delta T-cell differentiation
+ GO:0045589, regulation of suppressor T-cell differentiation
+ GO:0045590, negative regulation of suppressor T-cell differentiation
+ GO:0045591, positive regulation of suppressor T-cell differentiation
+ GO:0045619, regulation of lymphocyte differentiation
+ GO:0045620, negative regulation of lymphocyte differentiation
+ GO:0045621, positive regulation of lymphocyte differentiation
+ GO:0045622, regulation of T-helper cell differentiation
+ GO:0045623, negative regulation of T-helper cell differentiation
+ GO:0045624, positive regulation of T-helper cell differentiation
+ GO:0045625, regulation of T-helper 1 cell differentiation
+ GO:0045626, negative regulation of T-helper 1 cell differentiation
+ GO:0045627, positive regulation of T-helper 1 cell differentiation
+ GO:0045628, regulation of T-helper 2 cell differentiation
+ GO:0045629, negative regulation of T-helper 2 cell differentiation
+ GO:0045630, positive regulation of T-helper 2 cell differentiation
+ GO:0045829, negative regulation of isotype switching
+ GO:0045830, positive regulation of isotype switching
+ GO:0046006, regulation of activated T-cell proliferation
+ GO:0046007, negative regulation of activated T-cell proliferation
+ GO:0046013, regulation of resting T-cell proliferation
+ GO:0046014, negative regulation of resting T-cell proliferation
+ GO:0046629, gamma-delta T-cell activation
+ GO:0046630, gamma-delta T-cell proliferation
+ GO:0046631, alpha-beta T-cell activation
+ GO:0046632, alpha-beta T-cell differentiation
+ GO:0046633, alpha-beta T-cell proliferation
+ GO:0046634, regulation of alpha-beta T-cell activation
+ GO:0046635, positive regulation of alpha-beta T-cell activation
+ GO:0046636, negative regulation of alpha-beta T-cell activation
+ GO:0046637, regulation of alpha-beta T-cell differentiation
+ GO:0046638, positive regulation of alpha-beta T-cell differentiation
+ GO:0046639, negative regulation of alpha-beta T-cell differentiation
+ GO:0046640, regulation of alpha-beta T-cell proliferation
+ GO:0046641, positive regulation of alpha-beta T-cell proliferation
+ GO:0046642, negative regulation of alpha-beta T-cell proliferation
+ GO:0046643, regulation of gamma-delta T-cell activation
+ GO:0046644, negative regulation of gamma-delta T-cell activation
+ GO:0046645, positive regulation of gamma-delta T-cell activation
+ GO:0046646, regulation of gamma-delta T-cell proliferation
+ GO:0046647, negative regulation of gamma-delta T-cell proliferation
+ GO:0046648, positive regulation of gamma-delta T-cell proliferation
+ GO:0046649, lymphocyte activation
+ GO:0046651, lymphocyte proliferation
+ GO:0046652, thymocyte differentiation
+ GO:0048143, astrocyte activation
+ GO:0050670, regulation of lymphocyte proliferation
+ GO:0050671, positive regulation of lymphocyte proliferation
+ GO:0050672, negative regulation of lymphocyte proliferation
+ GO:0050677, positive regulation of urothelial cell proliferation
+ GO:0050679, positive regulation of epithelial cell proliferation
Terms movements under GO Slim term 'metabolism ; GO:0008152'
- GO:0019268, glutamate biosynthesis, using glutamate dehydrogenase (NAD(P)+)
- GO:0019269, glutamate biosynthesis, using glutamate synthase (NADPH)
- GO:0019443, tryptophan catabolism, using tryptophanase
Terms movements under GO Slim term 'catabolism ; GO:0009056'
- GO:0019443, tryptophan catabolism, using tryptophanase
Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
- GO:0019268, glutamate biosynthesis, using glutamate dehydrogenase (NAD(P)+)
- GO:0019269, glutamate biosynthesis, using glutamate synthase (NADPH)
Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607'
+ GO:0009870, defense response signaling pathway, resistance-gene dependent
+ GO:0043011, dendritic cell differentiation
Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
- GO:0000190, MAPKKK cascade (pseudohyphal growth)
- GO:0000191, activation of MAPKKK (pseudohyphal growth)
- GO:0000192, activation of MAPKK (pseudohyphal growth)
- GO:0000193, activation of MAPK (pseudohyphal growth)
- GO:0000194, inactivation of MAPK (pseudohyphal growth)
- GO:0000195, nuclear translocation of MAPK (pseudohyphal growth)
- GO:0007125, invasive growth
- GO:0007149, colony morphology
Terms movements under GO Slim term 'cell homeostasis ; GO:0019725'
+ GO:0006924, programmed cell death, activated T-cells
Terms movements under GO Slim term 'growth ; GO:0040007'
- GO:0000190, MAPKKK cascade (pseudohyphal growth)
- GO:0000191, activation of MAPKKK (pseudohyphal growth)
- GO:0000192, activation of MAPKK (pseudohyphal growth)
- GO:0000193, activation of MAPK (pseudohyphal growth)
- GO:0000194, inactivation of MAPK (pseudohyphal growth)
- GO:0000195, nuclear translocation of MAPK (pseudohyphal growth)
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
711107 None Flower development [none]
746118 Fixed Dodgy light signaling pathway defs [none]
751074 Works For Me replication licencing checkpoint [none]
759845 Works For Me lost centromere/kinetochore complex? [none]
795484 Accepted new term for mito complex GO:0001401
796296 Accepted filamentous growth terms GO:0001402-01403
796650 Out of Date f-actin capping etc [none]
796726 Accepted srp receptor complex & translocon GO:0030867-30868
800360 Fixed motor activity [none]
800976 Fixed obsolete 8580 [none]
804650 Accepted sensu Archaea component terms GO:0030871-30873
809520 Accepted new TAIR PROCESS TERMS GO:0010148-10167
809521 Fixed defense response signaling pathway, resistance-gene dependen GO:0010204
811339 Fixed re-arrange parentage of meiotic recombination [none]
815058 Accepted new grouping term actin cortical cytoskeleton GO:0030863-30866
816689 Accepted NURF, ACF, CHRAC complexes: definitions and synonyms GO:0035060
817175 Accepted RENT complex GO:0030869
817264 None trichome morphogeneiss GO:0048271-48272 GO:0048274
817268 Accepted MRE11 complex (multisubunit endonuclease) GO:0030870
819373 Accepted possible new term request GO:0030874-30875
820575 Accepted complexes to move below cytoplasm? [none]
820588 Accepted possible term merge, signal sequence receptor complex [none]
821151 Fixed English English spellings [none]
827704 Fixed EASY:nucleoside transporter activity [none]
828437 Fixed GO:0005579 Membrane Attack Complex Needs New Definition [none]
828909 Fixed SGD terms for renaming [none]
831214 Duplicate transcriptional repressor activity (def) [none]
832054 Accepted function terms from TAIR GO:0010173-10181
832922 Fixed GO new in defs file GO:0043033
833640 Duplicate Definition of invasive growth [none]
835077 Fixed GO:0048247 lymphocyte chemotaxis definition clarification [none]
835133 Rejected Golgi transport vesicle coating [none]
835246 None GO:0030098 lymphocyte differentiation definition fix [none]
835700 Accepted EASY: IL-20 receptor complex GO:0030876
835994 Accepted Terms related to lymphocyte activation GO:0001767-01772
836136 None TAIR process terms-11/04/03 GO:0010182-10200
836471 Accepted Proposed changes in immune system terms GO:0001773-01774
836474 Fixed GO:0045321 cell activation name and definition GO:0001775
836629 Accepted GO:0016209 antioxidant activity - child [none]
837176 Accepted beta-2-microglobulin binding GO:0030881
837181 Accepted exogenous lipid antigen binding GO:0030882-30884
837215 Accepted pos reg of dendritic cell activation GO:0030885-30887
837306 Fixed GO:0005868 : cytoplasmic dynein complex [none]
837394 Accepted RCAF complex GO:0035059
837396 Fixed definition ref modification for GO:0015268 [none]
837850 Fixed Request definition for signal complex formation GO:0007172 [none]
837886 Accepted Function terms in process [none]
837975 Fixed Redefinition of GO:0043029 T-cell homeostasis [none]
839261 Duplicate DNA repair function terms in process [none]
839824 Accepted EASY: reg of B-cell proliferation GO:0030888-30890
839981 Accepted RNA polymerase complex GO:0030880
840071 Accepted fractalkine biosynthesis GO:0050751-50756
840123 Accepted new term: thyroid development GO:0030878
843809 Works For Me cant find TFIIB [none]
843881 Rejected peroxidase activity (rev. req) [none]
844069 Fixed GO:0009978 [none]
845952 Accepted destruction complex GO:0030877
846248 Fixed GO:0005023 (TGF alpha kinase) is incorrect, redundant [none]
846281 Accepted GO:0008019 (macrophage receptor) NOT a kinase [none]
848163 Accepted mammary gland development GO:0030879
848649 Fixed Correction to def. of GO:0004840 [none]
849915 Works For Me True path violation: children of GO:9314 [none]
850260 Works For Me GO:0030169 synonyms needed GO:0050750
850263 Accepted apolipoprotein E receptor 2 binding GO:0050746-50749
850749 Accepted thymidylate synthase biosynthesis GO:0050757-50760
Statistics:
Component: 1364 terms, 82.8% defined (1129 terms defined)
Function: 7272 terms, 84.2% defined (6126 terms defined)
Process: 8026 terms, 89.0% defined (7143 terms defined)
Total: 16662 terms, 86.4% defined (14398 terms defined)
Term errors
none