GO Monthly Release Notes for January 2003 ======================== Generated on Mon Oct 27 12:28:52 2003 Files used: component old: 2.285 new: 2.296 function old: 2.564 new: 2.581 process old: 2.648 new: 2.657 definitions old: 2.877 new: 2.907 GO Slim: Generic.0208 Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (8 new terms) GO:0000343 GO:0009536 SGD D plastid-encoded plastid RNA polymerase complex A GO:0000344 GO:0009536 SGD D plastid-encoded plastid RNA polymerase complex B GO:0000345 GO:0005829 SGD D cytosolic DNA-directed RNA polymerase (sensu Bacteria) GO:0009986 GO:0005623 TAIR D cell surface GO:0030673 GO:0005623 MAH D 661069 axolemma GO:0042579 GO:0005737 JL D 669029 microbody GO:0042580 GO:0005777 JL D 668448 mannosome GO:0046821 GO:0005622 AI D extrachromosomal DNA New obsoletions in component ontology GO:0001683, axonemal dynein heavy chain: represents a single gene product and not a complex. GO:0001684, axonemal dynein intermediate chain: represents a single gene product and not a complex. GO:0001685, axonemal dynein intermediate light chain: represents a single gene product and not a complex. GO:0001686, axonemal dynein light chain: represents a single gene product and not a complex. GO:0001687, cytoplasmic dynein heavy chain: represents a single gene product and not a complex. GO:0001688, cytoplasmic dynein intermediate chain: represents a single gene product and not a complex. GO:0001689, cytoplasmic dynein intermediate light chain: represents a single gene product and not a complex. GO:0001690, cytoplasmic dynein light chain: represents a single gene product and not a complex. GO:0005580, membrane attack complex protein alphaM chain: represents a single gene product and not a complex. GO:0005613, laminin receptor protein: is out of date. It seems to be referring to the non-integrin 34/67kDa laminin receptor, which new research has shown to actually be a ribosomal protein of the SP2 family. GO:0005670, transcription-activating factor, 30kD: represents a single gene product and not a complex. GO:0005888, proteoglycan integral to plasma membrane: describes the composition (i.e. proteoglycan) and not the location of a gene product. GO:0005957, debranching enzyme: is ambiguous (there are several debranching enzymes) and because it probably represents the glycogen debranching enzyme which is a single gene product and not a complex. GO:0005972, fibrinogen alpha chain: represents a single gene product and not a complex. GO:0005973, fibrinogen beta chain: represents a single gene product and not a complex. GO:0005974, fibrinogen gamma chain: represents a single gene product and not a complex. GO:0008008, membrane attack complex protein beta2 chain: represents a single gene product and not a complex. GO:0009839, SCF complex substrate recognition subunit: represents a single gene product and not a complex. GO:0009929, cell surface (sensu Magnoliophyta): No reason given. GO:0018998, metaxin: represents a single gene product and not a complex. GO:0019032, viral glycoprotein: represents a type of gene product and not a location or complex. GO:0019816, B-cell receptor accessory molecule complex: represents a molecule and not a location or complex. Term name changes in component ontology GO:0005605: basement lamina --> basal lamina GO:0005665: DNA-directed RNA polymerase II, core --> DNA-directed RNA polymerase II, core complex GO:0005760: gamma DNA polymerase --> gamma DNA polymerase complex GO:0009928: cell surface --> cell surface (sensu Magnoliophyta) GO:0030312: external protective structure --> external encapsulating structure New definitions for component ontology terms (26 new definitions) GO:0001683, axonemal dynein heavy chain GO:0001684, axonemal dynein intermediate chain GO:0001685, axonemal dynein intermediate light chain GO:0001686, axonemal dynein light chain GO:0001687, cytoplasmic dynein heavy chain GO:0001688, cytoplasmic dynein intermediate chain GO:0001689, cytoplasmic dynein intermediate light chain GO:0001690, cytoplasmic dynein light chain GO:0005580, membrane attack complex protein alphaM chain GO:0005613, laminin receptor protein GO:0005665, DNA-directed RNA polymerase II, core complex GO:0005666, DNA-directed RNA polymerase III complex GO:0005670, transcription-activating factor, 30kD GO:0005727, extrachromosomal circular DNA GO:0005736, DNA-directed RNA polymerase I complex GO:0005957, debranching enzyme GO:0005972, fibrinogen alpha chain GO:0005973, fibrinogen beta chain GO:0005974, fibrinogen gamma chain GO:0008008, membrane attack complex protein beta2 chain GO:0018998, metaxin GO:0019032, viral glycoprotein GO:0019815, B-cell receptor complex GO:0019816, B-cell receptor accessory molecule complex GO:0030312, external encapsulating structure GO:0042101, T-cell receptor complex Term movements in component ontology: Terms movements under GO Slim term 'cellular_component ; GO:0005575' - GO:0019032, viral glycoprotein Terms movements under GO Slim term 'extracellular ; GO:0005576' - GO:0005577, fibrinogen complex - GO:0005619, spore wall (sensu Fungi) - GO:0005621, bud scar - GO:0005630, dityrosine layer of spore wall - GO:0005631, chitosan layer of spore wall - GO:0005632, inner layer of spore wall - GO:0005972, fibrinogen alpha chain - GO:0005973, fibrinogen beta chain - GO:0005974, fibrinogen gamma chain - GO:0009274, cell wall (sensu Bacteria) - GO:0009275, cell wall (sensu Gram-positive Bacteria) - GO:0009276, cell wall (sensu Gram-negative Bacteria) - GO:0009277, cell wall (sensu Fungi) - GO:0009505, cell wall (sensu Magnoliophyta) - GO:0009530, primary cell wall - GO:0009531, secondary cell wall - GO:0009549, cellulose microfibril - GO:0019032, viral glycoprotein - GO:0030287, periplasmic space (sensu Fungi) - GO:0030445, yeast-form cell wall - GO:0030446, hyphal cell wall Terms movements under GO Slim term 'extracellular matrix ; GO:0005578' - GO:0005580, membrane attack complex protein alphaM chain - GO:0005613, laminin receptor protein - GO:0008008, membrane attack complex protein beta2 chain Terms movements under GO Slim term 'extracellular space ; GO:0005615' + GO:0005577, fibrinogen complex Terms movements under GO Slim term 'intracellular ; GO:0005622' - GO:0009839, SCF complex substrate recognition subunit Terms movements under GO Slim term 'cell ; GO:0005623' - GO:0005888, proteoglycan integral to plasma membrane + GO:0009505, cell wall (sensu Magnoliophyta) + GO:0009530, primary cell wall + GO:0009531, secondary cell wall + GO:0009549, cellulose microfibril + GO:0009897, external side of plasma membrane - GO:0009929, cell surface (sensu Magnoliophyta) - GO:0018998, metaxin Terms movements under GO Slim term 'nucleoplasm ; GO:0005654' - GO:0005670, transcription-activating factor, 30kD Terms movements under GO Slim term 'cytoplasm ; GO:0005737' - GO:0009839, SCF complex substrate recognition subunit Terms movements under GO Slim term 'mitochondrion ; GO:0005739' - GO:0018998, metaxin Terms movements under GO Slim term 'cytoskeleton ; GO:0005856' - GO:0001683, axonemal dynein heavy chain - GO:0001684, axonemal dynein intermediate chain - GO:0001685, axonemal dynein intermediate light chain - GO:0001686, axonemal dynein light chain - GO:0001687, cytoplasmic dynein heavy chain - GO:0001688, cytoplasmic dynein intermediate chain - GO:0001689, cytoplasmic dynein intermediate light chain - GO:0001690, cytoplasmic dynein light chain Terms movements under GO Slim term 'plasma membrane ; GO:0005886' - GO:0005888, proteoglycan integral to plasma membrane - GO:0019816, B-cell receptor accessory molecule complex Terms movements under GO Slim term 'cilium ; GO:0005929' - GO:0001683, axonemal dynein heavy chain - GO:0001684, axonemal dynein intermediate chain - GO:0001685, axonemal dynein intermediate light chain - GO:0001686, axonemal dynein light chain Terms movements under GO Slim term 'unlocalized ; GO:0005941' - GO:0005957, debranching enzyme Terms movements under GO Slim term 'external encapsulating structure ; GO:0030312' + GO:0005619, spore wall (sensu Fungi) + GO:0005621, bud scar + GO:0005630, dityrosine layer of spore wall + GO:0005631, chitosan layer of spore wall + GO:0005632, inner layer of spore wall + GO:0009274, cell wall (sensu Bacteria) + GO:0009275, cell wall (sensu Gram-positive Bacteria) + GO:0009276, cell wall (sensu Gram-negative Bacteria) + GO:0009277, cell wall (sensu Fungi) + GO:0030287, periplasmic space (sensu Fungi) + GO:0030445, yeast-form cell wall + GO:0030446, hyphal cell wall New terms in function ontology (21 new terms) GO:0000773 GO:0003824 SGD D 665370 phosphatidyl-N-methylethanolamine N-methyltransferase GO:0001734 GO:0003824 MGI D 677062 mRNA (N6-adenosine)-methyltransferase GO:0009973 GO:0003824 TAIR D 661813 adenosine phosphosulfate reductase GO:0009974 GO:0003824 TAIR D 661813 epsilon hydroxylase GO:0009975 GO:0003824 TAIR D 661813 cyclase GO:0009976 GO:0003824 TAIR D 661813 tocopherol cyclase GO:0009977 GO:0005215 TAIR D 661813 delta-pH dependent transporter GO:0009978 GO:0003824 TAIR D 661813 allene oxide synthase GO:0009979 GO:0003824 TAIR D 661813 16:0 monogalactosyldiacylglycerol desaturase GO:0009980 GO:0008233 TAIR D 661813 glutamate carboxypeptidase GO:0009981 GO:0003824 TAIR D 661813 callose synthase GO:0009982 GO:0003824 TAIR D 661813 pseudouridine synthase GO:0009983 GO:0008233 TAIR D 661813 tyrosine aminopeptidase GO:0009984 GO:0003824 TAIR D 661813 adenylate forming enzyme GO:0009985 GO:0003824 TAIR D 661813 dihydroflavonol(thiole) lyase GO:0042576 GO:0008233 JL D 664053 aspartyl aminopeptidase GO:0042577 GO:0003824 JL D 664962 lipid phosphatase GO:0042578 GO:0003824 JL D phosphoric ester hydrolase GO:0046820 GO:0003824 AI D 4-amino-4-deoxychorismate synthase GO:0046848 GO:0005488 AI D 667678 hydroxyapatite binding GO:0046857 GO:0003824 AI D oxidoreductase, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor New obsoletions in function ontology GO:0008149, para-aminobenzoic acid (PABA) synthase: refers to two different functions, 1) a glutamine amidotransferase that functions as an aminodeoxychorismate synthase [itself composed of two enzymatic activities, a glutaminase and a chorismate aminase (this latter is sometimes referred to as the aminodeoxychorismate synthase)] and 2) a 4-amino-4-deoxychorismate aromatase (4-amino-4-deoxychorismate lyase). Note that the name 'para-amino benzoate synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional lyase activity was discovered. GO:0008438, 1-phosphatidylinositol-5-phosphate kinase: is a redundant grouping term with only one child. It is also incorrectly defined and has an incorrect EC dbxref. GO:0008950, p-aminobenzoate synthetase: refers to two different functions, 1) a glutamine amidotransferase that functions as an aminodeoxychorismate synthase [itself composed of two enzymatic activities, a glutaminase and a chorismate aminase (this latter is sometimes referred to as the aminodeoxychorismate synthase)] and 2) a 4-amino-4-deoxychorismate aromatase (4-amino-4-deoxychorismate lyase). Note that the name 'para-amino benzoate synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional lyase activity was discovered. Obsolete terms reinstated in function ontology GO:0019172, glyoxalase III: Term name changes in function ontology GO:0000107: imidazoleglycerol-phosphate synthase --> imidazoleglycerol phosphate synthase GO:0004172: ecdysteroid UDP-glucosyl/UDP glucuronosyl transferase --> ecdysteroid UDP-glucosyl/UDP-glucuronosyl transferase GO:0004366: glycerol-3-phosphate acyltransferase --> glycerol-3-phosphate O-acyltransferase GO:0004441: inositol-1,4,-bisphosphate 1-phosphatase --> inositol-1,4-bisphosphate 1-phosphatase GO:0004446: inositol-1,3,4,5-tetrakiphosphate 3-phosphatase --> inositol-1,3,4,5-tetrakisphosphate 3-phosphatase GO:0004756: selenide,water dikinase --> selenide, water dikinase GO:0005065: heterotrimeric G protein --> heterotrimeric G-protein GO:0008719: D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase --> dihydroneopterin triphosphate 2'-epimerase GO:0008987: quinolinate synthase --> quinolinate synthetase A GO:0016316: inositol-3,4,-bisphosphate 4-phosphatase --> inositol-3,4-bisphosphate 4-phosphatase GO:0017089: glycolipid transfer --> glycolipid transporter GO:0018725: trans-3,4-fihydrodiolphenanthrene sulfotransferase --> trans-3,4-dihydrodiolphenanthrene sulfotransferase GO:0045462: trichothecene 3-0-acetyltransferase --> trichothecene 3-O-acetyltransferase New definitions for function ontology terms (120 new definitions) GO:0000062, acyl-CoA binding GO:0000107, imidazoleglycerol phosphate synthase GO:0003676, nucleic acid binding GO:0003677, DNA binding GO:0003678, DNA helicase GO:0003682, chromatin binding GO:0003684, damaged DNA binding GO:0003688, DNA replication origin binding GO:0003693, P-element binding GO:0003696, satellite DNA binding GO:0003701, RNA polymerase I transcription factor GO:0003702, RNA polymerase II transcription factor GO:0003709, RNA polymerase III transcription factor GO:0003725, double-stranded RNA binding GO:0003727, single-stranded RNA binding GO:0003729, mRNA binding GO:0003779, actin binding GO:0003793, defense/immunity protein GO:0004177, aminopeptidase GO:0004649, poly(ADP-ribose) glycohydrolase GO:0004672, protein kinase GO:0004871, signal transducer GO:0005496, steroid binding GO:0005500, juvenile hormone binding GO:0005501, retinoid binding GO:0005515, protein binding GO:0005516, calmodulin binding GO:0005527, macrolide binding GO:0005534, galactose binding GO:0005539, glycosaminoglycan binding GO:0005540, hyaluronic acid binding GO:0005541, acyl-CoA or acyl binding GO:0005549, odorant binding GO:0008017, microtubule binding GO:0008081, phosphoric diester hydrolase GO:0008144, drug binding GO:0008145, phenylalkylamine binding GO:0008149, para-aminobenzoic acid (PABA) synthase GO:0008168, methyltransferase GO:0008201, heparin binding GO:0008402, aromatase GO:0008415, acyltransferase GO:0008443, phosphofructokinase GO:0008503, benzodiazepine receptor GO:0008686, 3,4 dihydroxy-2-butanone-4-phosphate synthase GO:0008696, 4-amino-4-deoxychorismate lyase GO:0008699, 4-diphosphocytidyl-2C-methyl-D-erythritol synthase GO:0008719, dihydroneopterin triphosphate 2'-epimerase GO:0008820, cobinamide phosphate guanylyltransferase GO:0008950, p-aminobenzoate synthetase GO:0008987, quinolinate synthetase A GO:0015026, coreceptor GO:0015070, toxin GO:0015136, sialic acid transporter GO:0015144, carbohydrate transporter GO:0015145, monosaccharide transporter GO:0015154, disaccharide transporter GO:0015157, oligosaccharide transporter GO:0015163, hexuronide transporter GO:0015464, acetylcholine receptor GO:0015485, cholesterol binding GO:0015631, tubulin binding GO:0015642, bacteriolytic toxin GO:0015644, lipoprotein antitoxin GO:0016284, alanine aminopeptidase GO:0016329, apoptosis regulator GO:0016490, structural constituent of peritrophic membrane (sensu Insecta) GO:0016788, hydrolase, acting on ester bonds GO:0016791, phosphoric monoester hydrolase GO:0016795, phosphoric triester hydrolase GO:0016835, carbon-oxygen lyase GO:0016836, hydro-lyase GO:0016837, carbon-oxygen lyase, acting on polysaccharides GO:0016838, carbon-oxygen lyase, acting on phosphates GO:0016839, other carbon-oxygen lyase GO:0016840, carbon-nitrogen lyase GO:0016841, ammonia-lyase GO:0016842, amidine-lyase GO:0016843, amine-lyase GO:0016845, other carbon-nitrogen lyase GO:0016846, carbon-sulfur lyase GO:0016875, ligase, forming carbon-oxygen bonds GO:0016877, ligase, forming carbon-sulfur bonds GO:0016879, ligase, forming carbon-nitrogen bonds GO:0016884, carbon-nitrogen ligase, with glutamine as amido-N-donor GO:0016885, ligase, forming carbon-carbon bonds GO:0016886, ligase, forming phosphoric ester bonds GO:0016917, GABA receptor GO:0017046, polypeptide hormone binding GO:0017089, glycolipid transporter GO:0017129, triglyceride binding GO:0017140, lipoic acid synthase GO:0017161, inositol-1,3,4-trisphosphate 4-phosphatase GO:0018707, 1-phenanthrol methyltransferase GO:0018710, acetone carboxylase GO:0018711, benzoyl acetate-CoA thiolase GO:0018722, 1-phenanthrol sulfotransferase GO:0018723, 3-phenanthrol sulfotransferase GO:0018724, 4-phenanthrol sulfotransferase GO:0018726, 9-phenanthrol sulfotransferase GO:0018727, 2-phenanthrol sulfotransferase GO:0019111, phenanthrol sulfotransferase GO:0019177, dihydroneopterin triphosphate pyrophosphohydrolase GO:0019200, carbohydrate kinase GO:0019201, nucleotide kinase GO:0019202, amino acid kinase GO:0019205, nucleobase, nucleoside, nucleotide kinase GO:0019206, nucleoside kinase GO:0019214, surfactant GO:0019811, cocaine binding GO:0019825, oxygen binding GO:0019840, isoprenoid binding GO:0019843, rRNA binding GO:0019846, enterotoxin GO:0019847, neurotoxin GO:0019848, conotoxin GO:0019849, cytotoxin GO:0030351, inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase GO:0030352, inositol-1,4,5,6-tetrakisphosphate 6-phosphatase GO:0030594, neurotransmitter receptor New term merges in function ontology GO:0016003 has been merged into GO:0016884, carbon-nitrogen ligase, with glutamine as amido-N-donor GO:0016302 has been merged into GO:0016791, phosphoric monoester hydrolase GO:0042172 has been merged into GO:0004057, arginyltransferase Term movements in function ontology: Terms movements under GO Slim term 'enzyme ; GO:0003824' - GO:0008149, para-aminobenzoic acid (PABA) synthase - GO:0008438, 1-phosphatidylinositol-5-phosphate kinase - GO:0008950, p-aminobenzoate synthetase Terms movements under GO Slim term 'protein kinase ; GO:0004672' - GO:0018110, histone-arginine kinase Terms movements under GO Slim term 'enzyme regulator ; GO:0030234' - GO:0008599, protein phosphatase type 1, regulator - GO:0008601, protein phosphatase type 2A, regulator - GO:0030359, protein phosphatase type 2B, regulator - GO:0030362, protein phosphatase type 4, regulator New terms in process ontology (32 new terms) GO:0046822 GO:0006810 AI D 665131 regulation of nucleocytoplasmic transport GO:0046823 GO:0006810 AI D 665131 negative regulation of nucleocytoplasmic transport GO:0046824 GO:0006810 AI D 665131 positive regulation of nucleocytoplasmic transport GO:0046825 GO:0006810 AI D 665131 regulation of protein-nucleus export GO:0015031 GO:0019538 GO:0046826 GO:0006810 AI D 665131 negative regulation of protein-nucleus export GO:0015031 GO:0019538 GO:0046827 GO:0006810 AI D 665131 positive regulation of protein-nucleus export GO:0015031 GO:0019538 GO:0046828 GO:0006810 AI D 665131 regulation of RNA-nucleus import GO:0008152 GO:0046829 GO:0006810 AI D 665131 negative regulation of RNA-nucleus import GO:0008152 GO:0046830 GO:0006810 AI D 665131 positive regulation of RNA-nucleus import GO:0008152 GO:0046831 GO:0006810 AI D 665131 regulation of RNA-nucleus export GO:0008152 GO:0046832 GO:0006810 AI D 665131 negative regulation of RNA-nucleus export GO:0008152 GO:0046833 GO:0006810 AI D 665131 positive regulation of RNA-nucleus export GO:0008152 GO:0046834 GO:0006629 AI D 664967 lipid phosphorylation GO:0008152 GO:0046835 GO:0005975 AI D 664967 carbohydrate phosphorylation GO:0008152 GO:0046836 GO:0006810 AI D 664457 glycolipid transport GO:0046838 GO:0005975 AI D 664967 phosphorylated carbohydrate dephosphorylation GO:0008152 GO:0046839 GO:0006629 AI D 664967 phospholipid dephosphorylation GO:0008152 GO:0046841 GO:0008152 AI D 664312 trisporic acid metabolism GO:0046842 GO:0008152 AI D 664312 trisporic acid biosynthesis GO:0046843 GO:0000003 AI D 665849 dorsal appendage formation GO:0046844 GO:0000003 AI D 665849 micropyle formation GO:0046845 GO:0007275 AI D 665784 branch cell fate determination (sensu Insecta) GO:0046846 GO:0007275 AI D 665784 tracheal placode cell fate determination (sensu Insecta) GO:0046847 GO:0016043 AI D 665630 filopodium formation GO:0046849 GO:0007582 AI D 667678 bone remodeling GO:0046850 GO:0007582 AI D 667678 regulation of bone remodeling GO:0046851 GO:0007582 AI D 667678 negative regulation of bone remodeling GO:0046852 GO:0007582 AI D 667678 positive regulation of bone remodeling GO:0046853 GO:0005975 AI D 664967 inositol and derivative phosphorylation GO:0008152 GO:0046854 GO:0006629 AI D 664967 phosphoinositide phosphorylation GO:0008152 GO:0046855 GO:0005975 AI D 664967 inositol phosphate dephosphorylation GO:0008152 GO:0046856 GO:0006629 AI D 664967 phosphoinositide dephosphorylation GO:0008152 New obsoletions in process ontology GO:0009402, toxin resistance: 'resistance' implies a phenotype rather than a biological process. Term name changes in process ontology GO:0000209: polyubiquitination --> protein polyubiquitination GO:0001732: formation of the translation initiation complex. --> formation of translation initiation complex GO:0006513: monoubiquitination --> protein monoubiquitination GO:0007425: tracheal determination --> tracheal cell fate determination (sensu Insecta) GO:0007426: tracheal outgrowth --> tracheal outgrowth (sensu Insecta) GO:0007427: tracheal cell migration --> tracheal cell migration (sensu Insecta) GO:0007428: primary tracheal branching --> primary tracheal branching (sensu Insecta) GO:0007429: secondary tracheal branching --> secondary tracheal branching (sensu Insecta) GO:0007430: terminal branching of trachea, cytoplasmic projection extension --> terminal branching of trachea, cytoplasmic projection extension (sensu Insecta) GO:0019615: catechol 'ortho-cleavage' --> catechol catabolism, ortho-cleavage GO:0019616: catechol 'meta-cleavage' --> catechol catabolism, meta-cleavage GO:0019617: protocatechuate 'meta-cleavage' --> protocatechuate catabolism, meta-cleavage GO:0019618: protocatechuate 'ortho-cleavage' --> protocatechuate catabolism, ortho-cleavage New definitions for process ontology terms (47 new definitions) GO:0001562, response to protozoa GO:0006119, oxidative phosphorylation GO:0006513, protein monoubiquitination GO:0006869, lipid transport GO:0006968, cellular defense response GO:0006974, response to DNA damage GO:0006986, response to unfolded protein GO:0007424, tracheal system development (sensu Insecta) GO:0007425, tracheal cell fate determination (sensu Insecta) GO:0007426, tracheal outgrowth (sensu Insecta) GO:0007427, tracheal cell migration (sensu Insecta) GO:0007428, primary tracheal branching (sensu Insecta) GO:0007429, secondary tracheal branching (sensu Insecta) GO:0007430, terminal branching of trachea, cytoplasmic projection extension (sensu Insecta) GO:0009254, peptidoglycan turnover GO:0009402, toxin resistance GO:0009592, perception of sound GO:0009593, perception of chemical substance GO:0009594, perception of nutrients GO:0009606, tropism GO:0009638, phototropism GO:0009652, thigmotropism GO:0009723, response to ethylene stimulus GO:0009725, response to hormone stimulus GO:0009733, response to auxin stimulus GO:0009735, response to cytokinin stimulus GO:0009737, response to abscisic acid stimulus GO:0009739, response to gibberellic acid stimulus GO:0009741, response to brassinosteroid stimulus GO:0009743, response to carbohydrate stimulus GO:0009744, response to sucrose stimulus GO:0009746, response to hexose stimulus GO:0009749, response to glucose stimulus GO:0009750, response to fructose stimulus GO:0009751, response to salicylic acid stimulus GO:0009753, response to jasmonic acid stimulus GO:0009875, pollen-pistil interaction GO:0009961, response to 1-aminocyclopropane-1-carboxylic acid GO:0016066, cellular defense response (sensu Vertebrata) GO:0016067, cellular defense response (sensu Invertebrata) GO:0016280, senescence GO:0016567, protein ubiquitination GO:0016579, protein deubiquitination GO:0019236, response to pheromone GO:0019882, antigen presentation GO:0030383, host-pathogen interaction GO:0042087, cell-mediated immune response New term merges in process ontology GO:0006514 has been merged into GO:0016579, protein deubiquitination Term movements in process ontology: Terms movements under GO Slim term 'protein modification ; GO:0006464' + GO:0000209, protein polyubiquitination + GO:0006513, protein monoubiquitination Terms movements under GO Slim term 'physiological processes ; GO:0007582' + GO:0001503, ossification + GO:0001649, osteoblast differentiation + GO:0030278, regulation of bone formation + GO:0030279, negative regulation of bone formation + GO:0030282, bone mineralization + GO:0030500, regulation of bone mineralization + GO:0030501, positive regulation of bone mineralization + GO:0030502, negative regulation of bone mineralization + GO:0045667, regulation of osteoblast differentiation + GO:0045668, negative regulation of osteoblast differentiation + GO:0045669, positive regulation of osteoblast differentiation + GO:0045778, positive regulation of bone formation Terms movements under GO Slim term 'metabolism ; GO:0008152' - GO:0009402, toxin resistance Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628' - GO:0009402, toxin resistance SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 580540 Fixed Comments for obsoleted terms [none] 598477 Accepted True Path Violation - Intercellular Canaliculus GO:0046581 643573 None Protein synthesis initiation GO:0001731-01732 661075 Accepted basal lamina [none] 661813 None TAIR function terms GO:0009973-09985 663182 Works For Me chloroplast membrane, integral to chloroplast membrane [none] 664043 Fixed typo in GO:45462 [none] 664053 Accepted aspartyl aminopeptidase GO:0042576 664312 Accepted trisporic acid biosynthesis GO:0046841-46842 664457 Fixed glycolipid transfer ; GO:0017089 GO:0046836 664962 Accepted child terms of lipid kinase ; GO:0001727 GO:0042577 664967 Accepted lipid phosphorylation/dephosphorylation GO:0046834-46835 GO:0046837-46840 GO:0046853-46856 665131 Accepted regulation of nucleocytoplasmic transport GO:0046822-46833 665370 None add term for EC 2.1.1.71 GO:0000773 665630 Accepted filopodium formation GO:0046847 665784 Accepted tracheal system development (sensu Insecta) GO:0046845-46846 665849 Accepted dorsal appendage formation GO:0046843-46844 667678 Accepted hydroxyapatite binding GO:0046848-46852 668409 Rejected Hydrogenosome GO:0042566 668448 Accepted mannosome GO:0042580 668952 Works For Me membrane fraction as an instance of membrane [none] 669029 Accepted microbody GO:0042579 671091 Accepted outer surface of cytoplasmic membrane [none] 677062 None mRNA n6 methylase GO:0001734 677712 None True path violation of protein phosphatase, regulator terms [none] Statistics: Component: 1160 terms, 72.1% defined (836 terms defined) Function: 5327 terms, 57.2% defined (3049 terms defined) Process: 6891 terms, 79.6% defined (5487 terms defined) Total: 13378 terms, 70.1% defined (9372 terms defined) Term errors GO:0009929, cell surface (sensu Magnoliophyta) - definition removed