GO Monthly Release Notes for February 2002
========================
Generated on Mon Oct 27 12:27:27 2003

Files used:
component	old: 2.127	new: 2.141
function 	old: 2.196	new: 2.244
process  	old: 2.198	new: 2.261
definitions	old: 2.226	new: 2.313
GO Slim: 	Generic.0208

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
               (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in component ontology (19 new terms)
GO:0000307	GO:0005622	SGD	D	      	cyclin-dependent protein kinase holoenzyme
GO:0000308	GO:0005622	SGD	D	      	cyclin-dependent protein kinase holoenzyme, cytoplasmic
          	GO:0005737
GO:0001669	GO:0005764	MGI	D	      	acrosome
GO:0012505	GO:0005623	TIGR	D	      	endomembrane system
GO:0012506	GO:0005623	TIGR	D	      	vesicle membrane
GO:0012507	GO:0005623	TIGR	D	      	ER-Golgi transport vesicle membrane
          	GO:0005794
          	GO:0016023
GO:0012508	GO:0005623	TIGR	D	      	Golgi-ER transport vesicle membrane
          	GO:0005794
          	GO:0016023
GO:0012509	GO:0005623	TIGR	D	      	inter-Golgi transport vesicle membrane
          	GO:0005794
          	GO:0016023
GO:0012510	GO:0005794	TIGR	D	      	trans-Golgi network transport vesicle membrane
          	GO:0016023
GO:0012511	GO:0005811	TIGR	D	      	lipid storage body (sensu Viridiplantae)
GO:0030529	GO:0005622	MAH	D	      	ribonucleoprotein
GO:0030530	GO:0005622	MAH	D	      	heterogeneous nuclear ribonucleoprotein
          	GO:0005634
GO:0030531	GO:0005622	MAH	D	      	small cytoplasmic ribonucleoprotein
          	GO:0005737
GO:0030532	GO:0005622	MAH	D	      	small nuclear ribonucleoprotein
          	GO:0005634
GO:0042025	GO:0005576	JL	D	      	host cell nucleus
GO:0042101	GO:0005886	JL	D	      	T-cell receptor complex
GO:0042105	GO:0005886	JL	D	      	alpha-beta T-cell receptor complex
GO:0042106	GO:0005886	JL	D	      	gamma-delta T-cell receptor complex
GO:0042151	GO:0005622	JL	D	523951	cnidocyst


New obsoletions in component ontology
GO:0005733, small nucleolar RNA: represents a gene product.
GO:0005734, box C+D snoRNP protein: represents a gene product.
GO:0005735, box H+ACA snoRNP protein: represents a gene product.


Term name changes in component ontology
GO:0005732: small nucleolar ribonucleoprotein particle --> small nucleolar ribonucleoprotein
GO:0005842: cytosolic large ribosomal (60S) subunit --> 60S ribosomal subunit
GO:0005843: cytosolic small ribosomal (40S) subunit --> 40S ribosomal subunit
GO:0009282: prokaryotic large ribosomal (50S) subunit --> prokaryotic 50S ribosomal subunit
GO:0009283: prokaryotic small ribosomal (30S) subunit --> prokaryotic 30S ribosomal subunit
GO:0019030: isohedral viral capsid --> icosahedral viral capsid
GO:0019908: cyclin-dependent protein kinase holoenzyme --> cyclin-dependent protein kinase holoenzyme, nuclear


New definitions for component ontology terms (29 new definitions)
GO:0000144, septin ring (sensu Saccharomyces)
GO:0005719, euchromatin
GO:0005720, heterochromatin
GO:0005732, small nucleolar ribonucleoprotein
GO:0005733, small nucleolar RNA
GO:0005734, box C+D snoRNP protein
GO:0005735, box H+ACA snoRNP protein
GO:0005811, lipid particle
GO:0019012, virion
GO:0019014, viral nucleocapsid
GO:0019016, non-segmented viral genome
GO:0019017, segmented viral genome
GO:0019018, bipartite viral genome
GO:0019019, tripartite viral genome
GO:0019020, multipartite viral genome
GO:0019021, DNA viral genome
GO:0019022, RNA viral genome
GO:0019023, dsRNA viral genome
GO:0019024, ssRNA viral genome
GO:0019025, positive sense viral genome
GO:0019026, negative sense viral genome
GO:0019027, ambisense viral genome
GO:0019028, viral capsid
GO:0019034, viral replication complex
GO:0019035, viral integration complex
GO:0019036, viral transcriptional complex
GO:0019037, viral assembly intermediate
GO:0019038, provirus
GO:0019908, cyclin-dependent protein kinase holoenzyme, nuclear


Term movements in component ontology:
Terms movements under GO Slim term 'extracellular ; GO:0005576'
+ GO:0009505, cell wall (sensu Magnoliophyta)

Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0005732, small nucleolar ribonucleoprotein
- GO:0009505, cell wall (sensu Magnoliophyta)
+ GO:0019908, cyclin-dependent protein kinase holoenzyme, nuclear

Terms movements under GO Slim term 'nucleolus ; GO:0005730'
- GO:0005733, small nucleolar RNA
- GO:0005734, box C+D snoRNP protein
- GO:0005735, box H+ACA snoRNP protein



New terms in function ontology (64 new terms)
GO:0001664	GO:0005102	MGI	D	      	G-protein coupled receptor ligand
GO:0001665	GO:0003824	MGI	D	      	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase
GO:0001668	GO:0003824	MGI	D	      	phosphatidylinositol-4,5-bisphosphate 5-phosphatase
GO:0004786	obs       	OS	D	      	Mn, Fe superoxide dismutase
GO:0009881	GO:0004872	TAIR	D	      	photoreceptor
GO:0009882	GO:0004872	TAIR	D	      	blue light photoreceptor
GO:0009883	GO:0004872	TAIR	D	      	red/far-red light photoreceptor
GO:0009884	GO:0004872	TAIR	D	      	cytokinin receptor
GO:0009885	GO:0004872	TAIR	D	      	transmembrane histidine kinase cytokinin receptor
GO:0030527	GO:0005198	MAH	D	      	structural constituent of chromatin
GO:0030533	GO:0030533	MAH	D	      	triplet codon-amino acid adaptor
GO:0030544	GO:0005515	MAH	D	      	HSP70 protein binding
GO:0030545	GO:0004871	MAH	D	      	receptor regulator
GO:0030546	GO:0004871	MAH	D	      	receptor activator
GO:0030547	GO:0004871	MAH	D	      	receptor inhibitor
GO:0030548	GO:0004871	MAH	D	      	acetylcholine receptor regulator
GO:0030549	GO:0004871	MAH	D	      	acetylcholine receptor activator
GO:0030550	GO:0004871	MAH	D	      	acetylcholine receptor inhibitor
GO:0030551	GO:0000166	MAH	D	      	cyclic nucleotide binding
GO:0030552	GO:0000166	MAH	D	      	3',5'-cyclic AMP binding
GO:0030553	GO:0000166	MAH	D	      	3',5'-cyclic GMP binding
GO:0030554	GO:0000166	MAH	D	      	adenyl nucleotide binding
GO:0030555	GO:0003723	MAH	D	      	RNA modification guide
GO:0030556	GO:0003723	MAH	D	      	rRNA modification guide
GO:0030557	GO:0003723	MAH	D	      	tRNA modification guide
GO:0030558	GO:0003723	MAH	D	      	RNA pseudouridylation guide
GO:0030559	GO:0003723	MAH	D	      	rRNA pseudouridylation guide
GO:0030560	GO:0003723	MAH	D	      	tRNA pseudouridylation guide
GO:0030561	GO:0003723	MAH	D	      	RNA 2'-O-ribose methylation guide
GO:0030562	GO:0003723	MAH	D	      	rRNA 2'-O-ribose methylation guide
GO:0030563	GO:0003723	MAH	D	      	snRNA 2'-O-ribose methylation guide
GO:0030564	GO:0003723	MAH	D	      	tRNA 2'-O-ribose methylation guide
GO:0030565	GO:0003723	MAH	D	      	snRNA pseudouridylation guide
GO:0030566	GO:0003723	MAH	D	      	snRNA modification guide
GO:0030567	GO:0030234	MAH	D	      	prothrombin activator
GO:0030568	GO:0030234	MAH	D	      	plasmin inhibitor
GO:0030569	GO:0030234	MAH	D	      	chymotrypsin inhibitor
GO:0042027	GO:0003824	JL	D	      	cyclophilin-type peptidyprolyl cis-trans isomerase
GO:0042028	GO:0003824	JL	D	      	juglone-sensitive peptidylprolyl cis-trans isomerase
GO:0042029	GO:0008233	JL	D	      	fibrolase
GO:0042030	GO:0030234	JL	D	      	ATPase inhibitor
GO:0042031	GO:0030234	JL	D	      	angiotensin-converting enzyme inhibitor
GO:0042043	GO:0005515	JL	D	      	neurexin binding
GO:0042054	GO:0003824	JL	D	      	histone methyltransferase
GO:0042056	GO:0005488	JL	D	      	chemoattractant
GO:0042057	GO:0004871	JL	D	      	transforming growth factor-beta receptor anchor
GO:0042064	GO:0005194	JL	D	      	cell adhesion receptor regulator
GO:0042071	GO:0003793	JL	D	      	leucokinin receptor
          	GO:0004872
          	GO:0005515
GO:0042072	GO:0005194	JL	D	      	cell adhesion receptor inhibitor
GO:0042083	GO:0003824	JL	D	      	5,10-methylenetetrahydrofolate-dependent methyltransferase
GO:0042084	GO:0003824	JL	D	      	5-methyltetrahydrofolate
GO:0042085	GO:0003824	JL	D	      	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase
GO:0042086	GO:0003824	JL	D	      	5-methyl-5,6,7,8-tetrahydromethanopterin-dependent methyltransferase
GO:0042096	GO:0004872	JL	D	      	alpha-beta T-cell receptor
GO:0042099	GO:0004872	JL	D	      	gamma-delta T-cell receptor
GO:0042123	GO:0003824	JL	D	516053	glucanosyltransferase
GO:0042124	GO:0003824	JL	D	516114	1,3-beta-glucanosyltransferase
GO:0042131	GO:0003824	JL	D	516118	thiamine phosphate phosphatase
GO:0042132	GO:0003824	JL	D	516124	fructose-1,6-bisphosphatase
GO:0042134	GO:0003723	JL	D	516129	rRNA primary transcript binding
GO:0042141	GO:0000166	JL	D	516137	mating pheromone exporter
          	GO:0003824
          	GO:0005215
GO:0042143	GO:0003824	JL	D	516140	phytochelatin synthase
GO:0042153	GO:0005515	JL	D	514798	RPTP-like protein binding
GO:0042156	GO:0003700	JL	D	      	zinc-mediated transcriptional activator


New obsoletions in function ontology
GO:0003733, ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0003734, small nuclear ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0003750, cell cycle regulator: does not represent a single molecular function.
GO:0004600, cyclophilin: No reason given.
GO:0005563, transfer RNA: represents a gene product. Use the function term "triplet codon-amino acid adaptor ; GO:0030533."
GO:0005566, ribosomal RNA: represents gene products.
GO:0005569, small nucleolar RNA: represents gene products.
GO:0008436, heterogeneous nuclear ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0009388, antisense RNA: represents a gene product.
GO:0030052, parvulin: No reason given.
GO:0030053, immunophilin: No reason given.
GO:0030355, small nucleolar ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0030356, small cytoplasmic ribonucleoprotein: describes a cellular component rather than a molecular function.


Term name changes in function ontology
GO:0001647: cytokinin receptor --> G-protein coupled cytokinin receptor
GO:0003735: structural protein of ribosome --> structural constituent of ribosome
GO:0003755: peptidyl-prolyl isomerase --> peptidylprolyl cis-trans isomerase
GO:0004866: proteinase inhibitor --> endopeptidase inhibitor
GO:0004892: B cell receptor --> B-cell receptor
GO:0004894: T cell receptor --> T-cell receptor
GO:0005077: MAP-kinase anchoring protein --> MAP-kinase anchor protein
GO:0005079: protein kinase A anchoring protein --> protein kinase A anchor protein
GO:0005198: structural protein --> structural molecule
GO:0005199: cell wall structural protein --> structural constituent of cell wall
GO:0005200: structural protein of cytoskeleton --> structural constituent of cytoskeleton
GO:0005201: extracellular matrix structural protein --> extracellular matrix structural constituent
GO:0005212: structural protein of eye lens --> structural constituent of eye lens
GO:0005213: structural protein of chorion (sensu Insecta) --> structural constituent of chorion (sensu Insecta)
GO:0005214: structural protein of cuticle (sensu Insecta) --> structural constituent of cuticle (sensu Insecta)
GO:0008010: structural protein of larval cuticle (sensu Insecta) --> structural constituent of larval cuticle (sensu Insecta)
GO:0008011: structural protein of pupal cuticle (sensu Insecta) --> structural constituent of pupal cuticle (sensu Insecta)
GO:0008012: structural protein of adult cuticle (sensu Insecta) --> structural constituent of adult cuticle (sensu Insecta)
GO:0008020: photoreceptor --> G-protein coupled photoreceptor
GO:0008147: structural protein of bone --> structural constituent of bone
GO:0008265: molybdopterin cofactor sulfurase --> Mo-molybdopterin cofactor sulfurase
GO:0008307: structural protein of muscle --> structural constituent of muscle
GO:0008316: structural protein of vitelline membrane (sensu Insecta) --> structural constituent of vitelline membrane (sensu Insecta)
GO:0016164: molybdopterin oxidoreductase --> Mo-molybdopterin oxidoreductase
GO:0016490: structural protein of peritrophic membrane (sensu Insecta) --> structural constituent of peritrophic membrane (sensu Insecta)
GO:0016500: hormone protein receptor --> protein-hormone receptor
GO:0016859: cis-trans-isomerase --> cis-trans isomerase
GO:0017056: structural protein of nuclear pore --> structural constituent of nuclear pore
GO:0017114: wide-spectrum proteinase inhibitor --> wide-spectrum protease inhibitor
GO:0019911: structural protein of myelin sheath --> structural constituent of myelin sheath
GO:0030020: extracellular matrix structural protein conferring tensile strength --> extracellular matrix structural constituent conferring tensile strength
GO:0030021: extracellular matrix structural protein conferring compression resistance --> extracellular matrix structural constituent conferring compression resistance
GO:0030022: extracellular matrix protein, adhesive --> extracellular matrix constituent, adhesive
GO:0030023: extracellular matrix protein conferring elasticity --> extracellular matrix constituent conferring elasticity
GO:0030051: FK506-binding isomerase --> FK506-sensitive peptidylprolyl cis-trans isomerase
GO:0030197: extracellular matrix protein, lubricant --> extracellular matrix constituent, lubricant
GO:0030280: structural protein of epidermis --> structural constituent of epidermis
GO:0030281: structural protein of cutaneous appendage --> structural constituent of cutaneous appendage
GO:0030345: structural protein of tooth enamel --> structural constituent of tooth enamel
GO:0030366: molybdopterin synthase --> Mo-molybdopterin synthase
GO:0030372: high molecular weight B cell growth factor receptor ligand --> high molecular weight B-cell growth factor receptor ligand
GO:0030373: high molecular weight B cell growth factor receptor --> high molecular weight B-cell growth factor receptor


New definitions for function ontology terms (67 new definitions)
GO:0001584, rhodopsin-like receptor
GO:0001599, endothelin-A receptor
GO:0001600, endothelin-B receptor
GO:0001601, peptide YY receptor
GO:0001602, pancreatic polypeptide receptor
GO:0001608, nucleotide receptor, G-protein coupled
GO:0001618, viral receptor
GO:0001619, lysosphingolipid and lysophosphatidic acid receptor
GO:0001620, class A orphan receptor
GO:0001633, secretin-like receptor
GO:0001639, PLC activating metabotropic glutamate receptor
GO:0001640, adenylate cyclase inhibiting metabotropic glutamate receptor
GO:0001641, group II metabotropic glutamate receptor
GO:0001642, group III metabotropic glutamate receptor
GO:0001645, class C orphan receptor
GO:0001647, G-protein coupled cytokinin receptor
GO:0003733, ribonucleoprotein
GO:0003734, small nuclear ribonucleoprotein
GO:0003735, structural constituent of ribosome
GO:0003750, cell cycle regulator
GO:0004866, endopeptidase inhibitor
GO:0004895, cell adhesion receptor
GO:0004901, granulocyte-macrophage colony stimulating factor receptor
GO:0004930, G-protein coupled receptor
GO:0004932, mating-type factor pheromone receptor
GO:0004949, cannaboid receptor
GO:0004950, chemokine receptor
GO:0004953, eicosanoid receptor
GO:0004962, endothelin receptor
GO:0004965, GABA-B receptor
GO:0004983, neuropeptide Y receptor
GO:0004984, olfactory receptor
GO:0005179, hormone
GO:0005194, cell adhesion molecule
GO:0005198, structural molecule
GO:0005199, structural constituent of cell wall
GO:0005200, structural constituent of cytoskeleton
GO:0005212, structural constituent of eye lens
GO:0005213, structural constituent of chorion (sensu Insecta)
GO:0005214, structural constituent of cuticle (sensu Insecta)
GO:0005563, transfer RNA
GO:0005566, ribosomal RNA
GO:0005569, small nucleolar RNA
GO:0008010, structural constituent of larval cuticle (sensu Insecta)
GO:0008011, structural constituent of pupal cuticle (sensu Insecta)
GO:0008012, structural constituent of adult cuticle (sensu Insecta)
GO:0008067, metabotropic glutamate, GABA-B-like receptor
GO:0008147, structural constituent of bone
GO:0008227, amine receptor
GO:0008233, peptidase
GO:0008307, structural constituent of muscle
GO:0008316, structural constituent of vitelline membrane (sensu Insecta)
GO:0008436, heterogeneous nuclear ribonucleoprotein
GO:0008527, taste receptor
GO:0009388, antisense RNA
GO:0016493, C-C chemokine receptor
GO:0016494, C-X-C chemokine receptor
GO:0016495, C-X3-C chemokine receptor
GO:0016526, G-protein coupled receptor, unknown ligand
GO:0016563, transcriptional activator
GO:0016887, ATPase
GO:0017056, structural constituent of nuclear pore
GO:0019911, structural constituent of myelin sheath
GO:0030345, structural constituent of tooth enamel
GO:0030355, small nucleolar ribonucleoprotein
GO:0030356, small cytoplasmic ribonucleoprotein
GO:0030414, protease inhibitor


New term merges in function ontology
GO:0003751 has been merged into GO:0016538, cyclin-dependent protein kinase, regulator
GO:0003752 has been merged into GO:0016538, cyclin-dependent protein kinase, regulator
GO:0003753 has been merged into GO:0016538, cyclin-dependent protein kinase, regulator
GO:0004330 has been merged into GO:0004331, fructose-2,6-bisphosphatase
GO:0030525 has been merged into GO:0004901, granulocyte-macrophage colony stimulating factor receptor


Term movements in function ontology:
Terms movements under GO Slim term 'nucleic acid binding ; GO:0003676'
- GO:0003733, ribonucleoprotein
- GO:0003734, small nuclear ribonucleoprotein
- GO:0008436, heterogeneous nuclear ribonucleoprotein
- GO:0030355, small nucleolar ribonucleoprotein
- GO:0030356, small cytoplasmic ribonucleoprotein

Terms movements under GO Slim term 'transcription factor ; GO:0003700'
- GO:0005563, transfer RNA

Terms movements under GO Slim term 'chaperone ; GO:0003754'
- GO:0003755, peptidylprolyl cis-trans isomerase
- GO:0004600, cyclophilin
- GO:0030051, FK506-sensitive peptidylprolyl cis-trans isomerase
- GO:0030052, parvulin
- GO:0030053, immunophilin

Terms movements under GO Slim term 'enzyme ; GO:0003824'
- GO:0004600, cyclophilin
- GO:0030052, parvulin
- GO:0030053, immunophilin

Terms movements under GO Slim term 'protein kinase ; GO:0004672'
+ GO:0004901, granulocyte-macrophage colony stimulating factor receptor

Terms movements under GO Slim term 'signal transducer ; GO:0004871'
- GO:0005569, small nucleolar RNA
- GO:0016964, alpha-2 macroglobulin receptor

Terms movements under GO Slim term 'receptor ; GO:0004872'
+ GO:0016964, alpha-2 macroglobulin receptor

Terms movements under GO Slim term 'cell adhesion molecule ; GO:0005194'
- GO:0003750, cell cycle regulator

Terms movements under GO Slim term 'protein tagging ; GO:0008638'
- GO:0005566, ribosomal RNA

Terms movements under GO Slim term 'antioxidant ; GO:0016209'
- GO:0009388, antisense RNA

Terms movements under GO Slim term 'enzyme regulator ; GO:0030234'
+ GO:0003804, blood coagulation factor X



New terms in process ontology (123 new terms)
GO:0001655	GO:0007275	MGI	D	      	urogenital system development
GO:0001656	GO:0007275	MGI	D	      	metanephros development
GO:0001657	GO:0007275	MGI	D	      	ureteric bud development
GO:0001658	GO:0007275	MGI	D	      	ureteric bud branching
GO:0001659	GO:0007582	MGI	D	      	thermoregulation
GO:0001660	GO:0006950	MGI	D	      	fever
          	GO:0007582
          	GO:0009607
GO:0001661	GO:0007610	MGI	D	      	taste aversion
GO:0001662	GO:0007610	MGI	D	      	behavioral fear response
GO:0001663	GO:0007582	MGI	D	      	physiological fear response
GO:0001666	GO:0006950	MGI	D	      	response to hypoxia
GO:0001667	GO:0008151	MGI	D	      	ameboid cell migration
GO:0006815	obs       	OS	D	      	sodium/potassium transport
GO:0012501	GO:0008219	TIGR	D	      	programmed cell death
GO:0012502	GO:0008219	TIGR	D	      	induction of programmed cell death
GO:0012503	GO:0008219	TIGR	D	      	induction of non-apoptotic programmed cell death
GO:0012504	GO:0006950	TIGR	D	      	induction of non-apoptotic programmed cell death by pathogen
          	GO:0009607
GO:0030534	GO:0007610	MAH	D	      	adult behavior
GO:0030535	GO:0007610	MAH	D	      	adult feeding behavior (sensu Insecta)
GO:0030536	GO:0007610	MAH	D	      	larval feeding behavior
GO:0030537	GO:0007610	MAH	D	      	larval behavior
GO:0030538	GO:0007275	MAH	D	      	genital morphogenesis
GO:0030539	GO:0007275	MAH	D	      	male genital morphogenesis
GO:0030540	GO:0007275	MAH	D	      	female genital morphogenesis
GO:0030541	GO:0007049	MAH	D	      	plasmid partitioning
GO:0030542	GO:0007049	MAH	D	      	plasmid partitioning (sensu Bacteria)
GO:0030543	GO:0007049	MAH	D	      	2-micron plasmid partitioning
GO:0042023	GO:0006259	JL	D	      	DNA endoreduplication
          	GO:0007049
GO:0042024	GO:0006259	JL	D	      	DNA endoreduplication initiation
          	GO:0007049
GO:0042026	GO:0008152	JL	D	      	protein refolding
GO:0042033	GO:0009058	JL	D	      	chemokine biosynthesis
          	GO:0009607
GO:0042034	GO:0006464	JL	D	      	peptidyl-lysine esterfication
GO:0042035	GO:0009058	JL	D	      	regulation of cytokine biosynthesis
          	GO:0009607
GO:0042036	GO:0009058	JL	D	      	inhibition of cytokine biosynthesis
          	GO:0009607
GO:0042037	GO:0006464	JL	D	      	peptidyl-histidine methylation, to form pros-methylhistidine
GO:0042038	GO:0006464	JL	D	      	peptidyl-histidine methylation, to form tele-methylhistidine
GO:0042039	GO:0006464	JL	D	      	vanadium incorporation into metallo-sulfur cluster
GO:0042040	GO:0006464	JL	D	      	metal-incorporation into metallo-pterin complex
GO:0042041	GO:0006464	JL	D	      	molybdenum incorporation into metallo-pterin complex
GO:0042042	GO:0006464	JL	D	      	tungsten incorporation into metallo-pterin complex
GO:0042044	GO:0006810	JL	D	      	fluid transport
GO:0042045	GO:0006810	JL	D	      	epithelial fluid transport
GO:0042046	GO:0006731	JL	D	      	W-molybdopterin cofactor metabolism
GO:0042047	GO:0006731	JL	D	      	W-molybdopterin cofactor biosynthesis
GO:0042048	GO:0007610	JL	D	      	olfactory behavior
GO:0042049	GO:0006629	JL	D	      	acyl-CoA homeostasis
          	GO:0019725
GO:0042050	GO:0006464	JL	D	      	protein amino acid lipidation
GO:0042051	GO:0007275	JL	D	      	photoreceptor development
GO:0042052	GO:0007275	JL	D	      	rhabdomere development
GO:0042053	GO:0006519	JL	D	      	regulation of dopamine concentration
GO:0042055	GO:0007275	JL	D	      	neuronal lineage restriction
GO:0042058	GO:0007165	JL	D	      	regulation of EGF receptor signaling pathway
GO:0042059	GO:0007165	JL	D	      	negative regulation of EGF receptor signaling pathway
GO:0042060	GO:0006950	JL	D	      	wound healing
          	GO:0009607
GO:0042061	GO:0007049	JL	D	      	entry into meiosis
GO:0042062	GO:0007275	JL	D	      	long-term strengthening of neuromuscular junction
GO:0042063	GO:0007275	JL	D	      	gliogenesis
GO:0042065	GO:0007275	JL	D	      	glial growth
GO:0042066	GO:0007275	JL	D	      	perineurial glial growth
GO:0042067	GO:0007010	JL	D	      	establishment of ommatidial polarity
          	GO:0007275
GO:0042068	GO:0008152	JL	D	      	regulation of pteridine metabolism
GO:0042069	GO:0006519	JL	D	      	regulation of catecholamine metabolism
GO:0042070	GO:0000003	JL	D	      	oocyte nucleus anchoring
GO:0042073	GO:0016043	JL	D	      	intraflagellar transport
GO:0042074	GO:0007275	JL	D	      	cell migration during gastrulation
          	GO:0008151
GO:0042075	GO:0006464	JL	D	      	nickel incorporation into nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
GO:0042076	GO:0006464	JL	D	      	phosphate-linked glycosylation
          	GO:0009058
          	GO:0019538
GO:0042077	GO:0006464	JL	D	      	phosphate-linked glycosylation via serine
          	GO:0009058
          	GO:0019538
GO:0042078	GO:0007049	JL	D	      	germ-line stem cell renewal
GO:0042079	GO:0006464	JL	D	      	GPI/GSI anchor metabolism
GO:0042080	GO:0006464	JL	D	      	GPI/GSI anchor synthesis
GO:0042081	GO:0006464	JL	D	      	GSI anchor metabolism
GO:0042082	GO:0006464	JL	D	      	GSI anchor synthesis
GO:0042087	GO:0006950	JL	D	      	cell-mediated immune response
          	GO:0009607
GO:0042088	GO:0006950	JL	D	      	T-helper 1 type immune response
          	GO:0009607
GO:0042089	GO:0009058	JL	D	      	cytokine biosynthesis
          	GO:0009607
GO:0042090	GO:0006950	JL	D	      	interleukin-12 biosynthesis
          	GO:0009058
          	GO:0009607
GO:0042091	GO:0006950	JL	D	      	interleukin-10 biosynthesis
          	GO:0009058
          	GO:0009607
GO:0042092	GO:0006950	JL	D	      	T-helper 2 type immune response
          	GO:0009607
GO:0042093	GO:0007275	JL	D	      	T-helper cell differentiation
          	GO:0009607
          	GO:0030154
GO:0042094	GO:0006950	JL	D	      	interleukin-2 biosynthesis
          	GO:0009058
          	GO:0009607
GO:0042095	GO:0006950	JL	D	      	interferon-gamma biosynthesis
          	GO:0009058
          	GO:0009607
GO:0042097	GO:0006950	JL	D	      	interleukin-4 biosynthesis
          	GO:0009607
GO:0042098	GO:0008283	JL	D	      	T-cell proliferation
          	GO:0009607
GO:0042100	GO:0008283	JL	D	      	B-cell proliferation
          	GO:0009607
GO:0042102	GO:0008283	JL	D	      	positive control of T-cell proliferation
          	GO:0009607
GO:0042103	GO:0008283	JL	D	      	positive control of resting T-cell proliferation
          	GO:0009607
GO:0042104	GO:0008283	JL	D	      	positive control of activated T-cell proliferation
          	GO:0009607
GO:0042107	GO:0009607	JL	D	      	cytokine metabolism
GO:0042108	GO:0009058	JL	D	      	activation of cytokine biosynthesis
          	GO:0009607
GO:0042109	GO:0006950	JL	D	      	tumor necrosis factor-beta biosynthesis
          	GO:0009607
GO:0042110	GO:0009607	JL	D	      	T-cell activation
GO:0042113	GO:0009607	JL	D	      	B-cell activation
GO:0042116	GO:0009607	JL	D	      	macrophage activation
GO:0042117	GO:0009607	JL	D	      	monocyte activation
GO:0042118	GO:0009607	JL	D	      	endothelial cell activation
GO:0042119	GO:0009607	JL	D	      	neutrophil activation
GO:0042120	GO:0005975	JL	D	      	alginic acid metabolism
GO:0042121	GO:0005975	JL	D	      	alginic acid biosynthesis
GO:0042122	GO:0005975	JL	D	      	alginic acid catabolism
GO:0042125	GO:0006464	JL	D	516117	protein amino acid galactosylation
GO:0042126	GO:0008152	JL	D	      	nitrate metabolism
GO:0042127	GO:0008283	JL	D	      	regulation of cell proliferation
GO:0042128	GO:0008152	JL	D	531543	nitrate assimilation
GO:0042129	GO:0008283	JL	D	      	regulation of T-cell proliferation
          	GO:0009607
GO:0042130	GO:0008283	JL	D	      	negative control of T-cell proliferation
          	GO:0009607
GO:0042133	GO:0007267	JL	D	      	neurotransmitter metabolism
          	GO:0008152
GO:0042135	GO:0007267	JL	D	      	neurotransmitter catabolism
          	GO:0008152
          	GO:0009056
GO:0042136	GO:0007267	JL	D	      	neurotransmitter biosynthesis
          	GO:0008152
          	GO:0009058
GO:0042137	GO:0007267	JL	D	      	neurotransmitter storage
          	GO:0008152
GO:0042138	GO:0006259	JL	D	531585	meiotic DNA double-strand break formation
          	GO:0007049
GO:0042139	GO:0006259	JL	D	      	early recombination nodule assembly
          	GO:0007049
GO:0042140	GO:0006259	JL	D	      	late recombination nodule assembly
          	GO:0007049
GO:0042142	GO:0006950	JL	D	516138	heavy metal chelation
          	GO:0009628
GO:0042144	GO:0006996	JL	D	516142	vacuole fusion (non-autophagic)
GO:0042145	GO:0006996	JL	D	516142	homotypic vacuole fusion (non-autophagic)
GO:0042146	GO:0006996	JL	D	516142	heterotypic vacuole fusion (non-autophagic)
GO:0042147	GO:0006996	JL	D	516144	retrograde (endosome to Golgi) transport
          	GO:0015031
GO:0042148	GO:0006259	JL	D	516147	D-loop formation
GO:0042149	GO:0006950	JL	D	516149	glucose starvation response
          	GO:0009607
GO:0042150	GO:0006259	JL	D	516151	plasmid recombination
GO:0042152	GO:0006259	JL	D	516153	RNA-mediated DNA recombination
GO:0042154	GO:0006950	JL	D	523544	attenuation of antimicrobial humoral response (sensu Invertebrata)
          	GO:0009607
GO:0042155	GO:0006950	JL	D	523544	attenuation of antimicrobial humoral response (sensu Vertebrata)
          	GO:0009607


New obsoletions in process ontology
GO:0006460, peptidylprolyl isomerase B reaction: No reason given.
GO:0007583, killer activity: No reason given.
GO:0009406, virulence: No reason given.


Term name changes in process ontology
GO:0006777: molybdopterin cofactor biosynthesis --> Mo-molybdopterin cofactor biosynthesis
GO:0006924: peripheral killing of activated T cells --> peripheral killing of activated T-cells
GO:0006959: humoral defense mechanism --> humoral immune response
GO:0007229: integrin receptor signal signaling pathway --> integrin-mediated signaling pathway
GO:0007334: agglutination --> agglutination (sensu Saccharomyces)
GO:0007444: imaginal discs development --> imaginal disc development
GO:0007484: genital morphogenesis --> genital morphogenesis (sensu Insecta)
GO:0007485: male genital morphogenesis --> male genital morphogenesis (sensu Insecta)
GO:0007486: female genital morphogenesis --> female genital morphogenesis (sensu Insecta)
GO:0007487: analia morphogenesis --> analia morphogenesis (sensu Insecta)
GO:0008341: response to cocaine --> response to cocaine (sensu Insecta)
GO:0008342: larval feeding behavior --> larval feeding behavior (sensu Insecta)
GO:0016244: non-apoptotic cell death --> non-apoptotic programmed cell death
GO:0018281: GPI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine --> GSI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine
GO:0018283: iron incorporation into iron-sulfur cluster --> iron incorporation into metallo-sulfur cluster
GO:0019720: molybdopterin cofactor metabolism --> Mo-molybdopterin cofactor metabolism
GO:0030183: B cell differentiation --> B-cell differentiation
GO:0030217: T cell differentiation --> T-cell differentiation
GO:0040036: regulation of FGF receptor signalling pathway --> regulation of FGF receptor signaling pathway
GO:0040037: negative regulation of FGF receptor signalling pathway --> negative regulation of FGF receptor signaling pathway


New definitions for process ontology terms (25 new definitions)
GO:0000065, nuclear migration (sensu Saccharomyces)
GO:0000071, mitotic spindle assembly (sensu Saccharomyces)
GO:0000073, spindle pole body separation (sensu Saccharomyces)
GO:0006458, `de novo` protein folding
GO:0006895, Golgi to endosome transport
GO:0006995, nitrogen starvation response
GO:0007146, recombination nodule assembly
GO:0007152, spore wall assembly (sensu Saccharomyces)
GO:0007153, germination (sensu Saccharomyces)
GO:0007328, pheromone response (sensu Saccharomyces)
GO:0007330, signal transduction of mating signal (sensu Saccharomyces)
GO:0007331, adaptation to mating signal (sensu Saccharomyces)
GO:0007574, cell aging (sensu Saccharomyces)
GO:0007577, autophagic death (sensu Saccharomyces)
GO:0007578, aging dependent sterility (sensu Saccharomyces)
GO:0007631, feeding behavior
GO:0008342, larval feeding behavior (sensu Insecta)
GO:0008343, adult feeding behavior
GO:0009267, starvation response
GO:0009405, pathogenesis
GO:0009616, virus induced gene silencing
GO:0015968, stringent response
GO:0016036, phosphate starvation response
GO:0016440, transcriptional gene silencing
GO:0018282, metal incorporation into metallo-sulfur cluster


New term merges in process ontology
GO:0019723 has been merged into GO:0042087, cell-mediated immune response


Term movements in process ontology:
Terms movements under GO Slim term 'carbohydrate metabolism ; GO:0005975'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006094, gluconeogenesis
+ GO:0006114, glycerol biosynthesis
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism
+ GO:0019565, aerobic glycerol fermentation
+ GO:0019588, glycerol fermentation
+ GO:0019589, glycerol fermentation to propane-1,3-diol

Terms movements under GO Slim term 'energy pathways ; GO:0006091'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism

Terms movements under GO Slim term 'DNA metabolism ; GO:0006259'
- GO:0006276, plasmid maintenance

Terms movements under GO Slim term 'transcription ; GO:0006350'
+ GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
+ GO:0006342, chromatin silencing
+ GO:0006343, establishment of chromatin silencing
+ GO:0006344, maintenance of chromatin silencing
+ GO:0006345, loss of chromatin silencing
+ GO:0006346, methylation-dependent chromatin silencing
+ GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
+ GO:0006348, chromatin silencing at telomere
+ GO:0016440, transcriptional gene silencing
+ GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)

Terms movements under GO Slim term 'lipid metabolism ; GO:0006629'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006114, glycerol biosynthesis
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism

Terms movements under GO Slim term 'stress response ; GO:0006950'
- GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
- GO:0006342, chromatin silencing
- GO:0006343, establishment of chromatin silencing
- GO:0006344, maintenance of chromatin silencing
- GO:0006345, loss of chromatin silencing
- GO:0006346, methylation-dependent chromatin silencing
- GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
- GO:0006348, chromatin silencing at telomere
- GO:0016246, RNA interference
- GO:0016440, transcriptional gene silencing
- GO:0016441, post-transcriptional gene silencing
- GO:0016458, gene silencing
- GO:0030422, RNA interference, production of guide RNAs
- GO:0030423, RNA interference, targeting of mRNA for destruction
- GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)

Terms movements under GO Slim term 'developmental processes ; GO:0007275'
- GO:0006929, substrate-bound cell migration
- GO:0006930, substrate-bound cell migration, cell extension
- GO:0006931, substrate-bound cell migration, cell attachment to substrate
- GO:0006932, substrate-bound cell migration, cell contraction
- GO:0006933, substrate-bound cell migration, cell release, from substrate
- GO:0006934, substrate-bound cell migration, adhesion receptor recycling
- GO:0007280, pole cell migration
- GO:0007297, follicle cell migration
- GO:0007298, border cell migration
- GO:0008354, germ-cell migration
- GO:0016477, cell migration
- GO:0030334, regulation of cell migration
- GO:0030335, positive regulation of cell migration
- GO:0030336, negative regulation of cell migration
- GO:0040039, inductive cell migration

Terms movements under GO Slim term 'physiological processes ; GO:0007582'
- GO:0007583, killer activity
- GO:0009406, virulence

Terms movements under GO Slim term 'metabolism ; GO:0008152'
+ GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
+ GO:0001506, neurotransmitter synthesis and storage
+ GO:0006342, chromatin silencing
+ GO:0006343, establishment of chromatin silencing
+ GO:0006344, maintenance of chromatin silencing
+ GO:0006345, loss of chromatin silencing
+ GO:0006346, methylation-dependent chromatin silencing
+ GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
+ GO:0006348, chromatin silencing at telomere
- GO:0006460, peptidylprolyl isomerase B reaction
+ GO:0009616, virus induced gene silencing
+ GO:0016246, RNA interference
+ GO:0016440, transcriptional gene silencing
+ GO:0016441, post-transcriptional gene silencing
+ GO:0016458, gene silencing
- GO:0018356, protein-phycobiliviolin linkage via S-phycobiliviolin-L-cysteine
+ GO:0019588, glycerol fermentation
+ GO:0019589, glycerol fermentation to propane-1,3-diol
+ GO:0030422, RNA interference, production of guide RNAs
+ GO:0030423, RNA interference, targeting of mRNA for destruction
+ GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)

Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006114, glycerol biosynthesis
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism
+ GO:0019565, aerobic glycerol fermentation
+ GO:0019588, glycerol fermentation
+ GO:0019589, glycerol fermentation to propane-1,3-diol

Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
+ GO:0006094, gluconeogenesis
- GO:0006114, glycerol biosynthesis

Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607'
- GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
- GO:0006342, chromatin silencing
- GO:0006343, establishment of chromatin silencing
- GO:0006344, maintenance of chromatin silencing
- GO:0006345, loss of chromatin silencing
- GO:0006346, methylation-dependent chromatin silencing
- GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
- GO:0006348, chromatin silencing at telomere
- GO:0016246, RNA interference
- GO:0016440, transcriptional gene silencing
- GO:0016441, post-transcriptional gene silencing
- GO:0016458, gene silencing
+ GO:0030183, B-cell differentiation
+ GO:0030217, T-cell differentiation
- GO:0030422, RNA interference, production of guide RNAs
- GO:0030423, RNA interference, targeting of mRNA for destruction
- GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)



SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
516131	None	Incyte#27	[none]




Statistics:
Component: 973 terms, 48.5% defined (472 terms defined)
Function: 4994 terms, 12.6% defined (627 terms defined)
Process: 4711 terms, 27.7% defined (1303 terms defined)
Total: 10678 terms, 22.5% defined (2402 terms defined)


Term errors
GO:0006814, sodium transport
- secondary ID GO:0006815 lost

GO:0007151, sporulation (sensu Saccharomyces)
- definition removed