GO Monthly Release Notes for May 2001 ======================== Generated on Mon Oct 27 12:26:33 2003 Files used: component old: 2.13 new: 2.23 function old: 2.31 new: 2.45 process old: 2.21 new: 2.35 definitions old: 2.16 new: 2.37 GO Slim: Generic.0208 Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (11 new terms) GO:0001533 GO:0005856 MGI D cornified envelope GO:0017086 GO:0005739 FB D 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) GO:0017087 GO:0005739 FB D mitochondrial processing peptidase GO:0017090 GO:0005575 FB D meprin A GO:0030008 GO:0005794 MAH D TRAPP GO:0030014 GO:0005654 MAH D CCR4-NOT complex GO:0030015 GO:0005654 MAH D CCR4-NOT core complex GO:0030016 GO:0005737 MAH D myofibril GO:0030017 GO:0005737 MAH D sarcomere GO:0030018 GO:0005737 MAH D Z disc GO:0030025 GO:0005941 MAH D NADH:plastoquinone reductase Term name changes in component ontology GO:0005862: tropomyosin --> muscle thin filament tropomyosin GO:0005863: thick filament --> muscle thick filament GO:0005865: thin filament --> muscle thin filament New definitions for component ontology terms (6 new definitions) GO:0005850, eukaryotic translation initiation factor 2 complex GO:0005851, eukaryotic translation initiation factor 2B complex GO:0005861, troponin complex GO:0005862, muscle thin filament tropomyosin GO:0005863, muscle thick filament GO:0005865, muscle thin filament Term movements in component ontology: Terms movements under GO Slim term 'cytoplasm ; GO:0005737' + GO:0005859, muscle myosin + GO:0005861, troponin complex + GO:0005862, muscle thin filament tropomyosin + GO:0005863, muscle thick filament + GO:0005865, muscle thin filament Terms movements under GO Slim term 'cytoskeleton ; GO:0005856' - GO:0005863, muscle thick filament Terms movements under GO Slim term 'plasma membrane ; GO:0005886' + GO:0000148, 1,3-beta-glucan synthase Terms movements under GO Slim term 'unlocalized ; GO:0005941' - GO:0000148, 1,3-beta-glucan synthase New terms in function ontology (21 new terms) GO:0009815 GO:0003824 TAIR D 1-aminopropane-1-carboxylate oxidase GO:0016347 GO:0005194 FB D calcium-independent cell adhesion molecule GO:0017080 GO:0005215 FB D sodium channel regulator GO:0017081 GO:0005215 FB D chloride channel regulator GO:0017082 GO:0003700 FB D mineralcorticoid receptor GO:0004872 GO:0017083 GO:0003824 FB D alpha(1,3)-fucosyltransferase GO:0017084 GO:0003824 FB D delta-1-pyrroline-5-carboxyate synthetase GO:0017088 GO:0008233 FB D Xaa-Pro dipeptidyl-peptidase GO:0017089 GO:0005215 FB D glycolipid transfer GO:0017091 GO:0003723 FB D AU-specific RNA binding GO:0017092 GO:0008233 FB D sterol regulatory element-binding protein site 2 protease GO:0017093 GO:0008233 FB D sterol regulatory element-binding protease GO:0017094 GO:0008233 FB D sterol regulatory element-binding protein site 1 protease GO:0017095 GO:0003824 FB D heparan sulfate 6-O-sulfotransferase GO:0030009 GO:0003793 MAH D complement factor H GO:0005198 GO:0030019 GO:0008233 MAH D tryptase GO:0030020 GO:0005198 MAH D extracellular matrix structural protein conferring tensile strength GO:0030021 GO:0005198 MAH D extracellular matrix structural protein conferring compression resistance GO:0030022 GO:0005194 MAH D extracellular matrix protein, adhesive GO:0005198 GO:0030023 GO:0005198 MAH D extracellular matrix protein conferring elasticity GO:0030024 GO:0003824 MAH D NADH:plastoquinone reductase New obsoletions in function ontology GO:0001511, fibrillin: No reason given. GO:0001528, elastin: No reason given. GO:0005202, collagen: No reason given. GO:0005203, proteoglycan: No reason given. GO:0005204, chondroitin sulfate proteoglycan: No reason given. GO:0005205, chondroitin sulfate/dermatan sulfate proteoglycan: No reason given. Term name changes in function ontology GO:0004133: debranching enzyme --> glycogen debranching enzyme GO:0005194: cell adhesion --> cell adhesion molecule GO:0008014: calcium-dependent cell adhesion --> calcium-dependent cell adhesion molecule GO:0008459: cholesterol transfechondroitin 6-sulfotransferase --> chondroitin 6-sulfotransferase New definitions for function ontology terms (9 new definitions) GO:0003743, translation initiation factor GO:0003746, translation elongation factor GO:0004045, aminoacyl-tRNA hydrolase GO:0004812, tRNA ligase GO:0005201, extracellular matrix structural protein GO:0005505, heavy metal binding GO:0008009, chemokine GO:0016987, sigma factor GO:0017016, RAS interactor Term movements in function ontology: Terms movements under GO Slim term 'structural protein ; GO:0005198' - GO:0001511, fibrillin - GO:0001528, elastin - GO:0005202, collagen - GO:0005203, proteoglycan - GO:0005204, chondroitin sulfate proteoglycan - GO:0005205, chondroitin sulfate/dermatan sulfate proteoglycan - GO:0005206, heparin sulfate proteoglycan - GO:0015017, glycipan - GO:0015023, syndecan Terms movements under GO Slim term 'transporter ; GO:0005215' + GO:0017077, oxidative phosphorylation uncoupler Terms movements under GO Slim term 'protein binding ; GO:0005515' + GO:0005041, low-density lipoprotein receptor + GO:0017078, HSC70-interacting Terms movements under GO Slim term 'translation factor ; GO:0008135' - GO:0017077, oxidative phosphorylation uncoupler New terms in process ontology (44 new terms) GO:0002117 GO:0007275 MGI D larval development (sensu Amphibia) GO:0002119 GO:0007275 MGI D larval development (sensu Nematoda) GO:0002164 GO:0007275 MGI D larval development GO:0002165 GO:0007275 MGI D larval/pupal development (sensu Insecta) GO:0002168 GO:0007275 MGI D larval development (sensu Insecta) GO:0009698 GO:0006519 TAIR D phenylpropanoid metabolism GO:0008152 GO:0009699 GO:0006519 TAIR D phenylpropanoid biosynthesis GO:0008152 GO:0009058 GO:0009800 GO:0006519 TAIR D cinnamic acid biosynthesis GO:0008152 GO:0009058 GO:0009801 GO:0006519 TAIR D cinnamic acid ester metabolism GO:0008152 GO:0009802 GO:0006519 TAIR D cinnamic acid ester biosynthesis GO:0008152 GO:0009058 GO:0009803 GO:0006519 TAIR D cinnamic acid metabolism GO:0008152 GO:0009804 GO:0008152 TAIR D coumarin metabolism GO:0009805 GO:0008152 TAIR D coumarin biosynthesis GO:0009806 GO:0008152 TAIR D lignan metabolism GO:0009807 GO:0008152 TAIR D lignan biosynthesis GO:0009808 GO:0008152 TAIR D lignin metabolism GO:0009809 GO:0008152 TAIR D lignin biosynthesis GO:0009810 GO:0008152 TAIR D stilbene metabolism GO:0009811 GO:0008152 TAIR D stilbene biosynthesis GO:0009812 GO:0008152 TAIR D flavonoid metabolism GO:0009813 GO:0008152 TAIR D flavonoid biosynthesis GO:0016348 GO:0007275 FB D leg joint morphogenesis GO:0016349 GO:0007275 FB D proboscis morphogenesis GO:0016350 GO:0007275 FB D maintenance of oocyte identity GO:0016351 GO:0008152 FB D drug susceptibility GO:0009628 GO:0016352 GO:0008152 FB D insecticide susceptibility GO:0009628 GO:0016353 GO:0008152 FB D carbamate susceptibility GO:0009628 GO:0016354 GO:0008152 FB D cyclodiene susceptibility GO:0009628 GO:0016355 GO:0008152 FB D DDT susceptibility GO:0009628 GO:0016356 GO:0008152 FB D organophosphosphorous susceptibility GO:0009628 GO:0016357 GO:0008152 FB D pyrethroid susceptibility GO:0009628 GO:0016358 GO:0007275 FB D dendrite morphogenesis GO:0016359 GO:0007049 FB D mitotic sister chromatid separation GO:0030001 GO:0006811 MAH D metal ion transport GO:0030002 GO:0008151 MAH D anion homeostasis GO:0030003 GO:0008151 MAH D cation homeostasis GO:0030004 GO:0008151 MAH D monovalent inorganic cation homeostasis GO:0030005 GO:0008151 MAH D di-, tri-valent inorganic cation homeostasis GO:0030006 GO:0008151 MAH D heavy metal ion homeostasis GO:0030007 GO:0008151 MAH D potassium ion homeostasis GO:0030010 GO:0007010 MAH D establishment of cell polarity GO:0030011 GO:0007010 MAH D maintenance of cell polarity GO:0030012 GO:0007010 MAH D establishment and/or maintenance of cell polarity (sensu Saccharomyces) GO:0030013 GO:0007010 MAH D maintenance of cell polarity (sensu Saccharomyces) New obsoletions in process ontology GO:0006806, insecticide resistance: No reason given. GO:0008161, carbamate resistance: No reason given. GO:0008162, cyclodiene resistance: No reason given. GO:0008163, DDT resistance: No reason given. GO:0008164, organophosphorous resistance: No reason given. GO:0008165, pyrethroid resistance: No reason given. GO:0009315, drug resistance: No reason given. Term name changes in process ontology GO:0007163: establishment of cell polarity --> establishment and/or maintenance of cell polarity New definitions for process ontology terms (3 new definitions) GO:0000075, cell cycle checkpoint GO:0006439, aminoacyl-tRNA hydrolase reaction GO:0006823, heavy metal ion transport Term movements in process ontology: Terms movements under GO Slim term 'cytoplasm organization and biogenesis ; GO:0007028' - GO:0007036, vacuolar calcium ion homeostasis Terms movements under GO Slim term 'developmental processes ; GO:0007275' + GO:0008363, larval cuticle synthesis + GO:0008364, pupal cuticle synthesis Terms movements under GO Slim term 'cell growth and maintenance ; GO:0008151' + GO:0007036, vacuolar calcium ion homeostasis Terms movements under GO Slim term 'metabolism ; GO:0008152' + GO:0006571, tyrosine biosynthesis - GO:0006806, insecticide resistance - GO:0008161, carbamate resistance - GO:0008162, cyclodiene resistance - GO:0008163, DDT resistance - GO:0008164, organophosphorous resistance - GO:0008165, pyrethroid resistance + GO:0009094, phenylalanine biosynthesis - GO:0009315, drug resistance + GO:0009423, chorismate biosynthesis + GO:0009697, salicylic acid biosynthesis + GO:0016089, aromatic amino acid family biosynthesis, shikimate pathway Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628' - GO:0006806, insecticide resistance - GO:0008161, carbamate resistance - GO:0008162, cyclodiene resistance - GO:0008163, DDT resistance - GO:0008164, organophosphorous resistance - GO:0008165, pyrethroid resistance - GO:0009315, drug resistance SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any none Statistics: Component: 743 terms, 32.3% defined (240 terms defined) Function: 3963 terms, 8.5% defined (335 terms defined) Process: 2980 terms, 13.2% defined (394 terms defined) Total: 7686 terms, 12.6% defined (969 terms defined) Term errors GO:0000074, cell cycle control - definition removed GO:0016089, aromatic amino acid family biosynthesis, shikimate pathway - definition removed GO:0017050, D-erythro-sphingosine kinase - definition removed GO:0017051, retinol dehydratase - definition removed