<?xml version="1.0" encoding="UTF-8"?>
<uniprot xmlns="http://uniprot.org/uniprot"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xsi:schemaLocation="http://uniprot.org/uniprot http://www.uniprot.org/docs/uniprot.xsd">
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>O09781</accession>
    <name>VP8_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Structural protein precursor VP8</fullName>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName>Putative 26 kDa protease</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName>Putative clamp protein VP8</fullName>
            </recommendedName>
        </component>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1996" name="Arch. Virol." volume="141" first="1689" last="1701">
            <title>The M(r) 43K major capsid protein of rice ragged stunt oryzavirus is a post-translationally processed product of a M(r) 67,348 polypeptide encoded by genome segment 8.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Zinkowsky E."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="8893791"/>
            <dbReference type="DOI" id="10.1007/BF01718292"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <reference key="2">
        <citation type="journal article" date="2002" name="Acta Biochim. Biophys. Sin." volume="34" first="565" last="570">
            <title>Self-aggregation of the structural protein encoded by rice ragged stunt Oryzavirus genome segment 8.</title>
            <authorList>
                <person name="Lu H.J."/>
                <person name="Shao C.G."/>
                <person name="Gong Z.X."/>
            </authorList>
            <dbReference type="PubMed" id="12198557"/>
        </citation>
        <scope>FUNCTION</scope>
    </reference>
    <comment type="function">
        <text evidence="1">120 subunits of the putative clamp protein VP8b appear to stabilize the capsid shell.</text>
    </comment>
    <comment type="subcellular location">
        <molecule>Putative clamp protein VP8</molecule>
        <subcellularLocation>
            <location evidence="2">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="L46682">
        <property type="protein sequence ID" value="AAB51456.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620528.1">
        <property type="nucleotide sequence ID" value="NC_003758.1"/>
    </dbReference>
    <dbReference type="GeneID" id="991200"/>
    <dbReference type="KEGG" id="vg:991200"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019028">
        <property type="term" value="C:viral capsid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0645">Protease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_5000142935" description="Structural protein precursor VP8">
        <location>
            <begin position="1"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_0000403639" description="Putative 26 kDa protease">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5000142936" description="Putative clamp protein VP8">
        <location>
            <begin position="225"/>
            <end position="596"/>
        </location>
    </feature>
    <evidence type="ECO:0000269" key="1">
        <source>
            <dbReference type="PubMed" id="12198557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="596" mass="67348" checksum="4AD4E851CCEC3E59" modified="1997-07-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2020-08-12" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>O41252</accession>
    <name>VP10_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Non-structural protein VP10</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1997" name="Arch. Virol." volume="142" first="1719" last="1726">
            <title>Rice ragged stunt oryzavirus genome segments S7 and S10 encode non-structural proteins of M(r) 68,025 (Pns7) and M(r) 32,364 (Pns10).</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Ramm K."/>
                <person name="Gellatly J.A."/>
                <person name="Li Z."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9672632"/>
            <dbReference type="DOI" id="10.1007/s007050050193"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <dbReference type="EMBL" id="U66712">
        <property type="protein sequence ID" value="AAB63566.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620539.1">
        <property type="nucleotide sequence ID" value="NC_003769.1"/>
    </dbReference>
    <dbReference type="GeneID" id="991202"/>
    <dbReference type="KEGG" id="vg:991202"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000403641" description="Non-structural protein VP10">
        <location>
            <begin position="1"/>
            <end position="297"/>
        </location>
    </feature>
    <sequence length="297" mass="32364" checksum="6FDBD8B2CF185FE0" modified="1998-01-01" version="1">MPFVQFPNLFEISKFARQGKTVSELKCEVWTDLLSYLRTGLPTGLLSDFAEHHELNQLQAFTAVQFDEPCFVLPARAAIIVYCPEQDDMLSGVFEVDATGKRTFVRTSNTDIIGSAKSDVSGGKQIQSVGVAQGLETVMQMMDYILIQFHVQFGSFTDIGHFGMMRDAIQLYGTCACPFLLSLARFSTALSYLNAKLPSIVGLHYSGEPTTLGGIITRGVNLSAREAYFSKKYDPAQSLVASAFFTVKTSASGATVIEKMSSDIGLVYHMNRAAAVKVVSSRIGRLGEVANFGDDAE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2020-12-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>O41253</accession>
    <name>VP7_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Microtubule-associated protein VP7</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1997" name="Arch. Virol." volume="142" first="1719" last="1726">
            <title>Rice ragged stunt oryzavirus genome segments S7 and S10 encode non-structural proteins of M(r) 68,025 (Pns7) and M(r) 32,364 (Pns10).</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Ramm K."/>
                <person name="Gellatly J.A."/>
                <person name="Li Z."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9672632"/>
            <dbReference type="DOI" id="10.1007/s007050050193"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <comment type="function">
        <text evidence="1">Minor inner capsid component. Displays NTPase and RNA 5'-triphosphatase (RTPase) activities. May function as a cofactor of polymerase. Associates with microtubules and plays a role in the formation, structural organization and morphology of viral inclusions, where the assembly of cores and the replication of viral RNA occur.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Virion</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Host cytoplasm</location>
            <location evidence="1">Host cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="U66713">
        <property type="protein sequence ID" value="AAB63567.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620540.1">
        <property type="nucleotide sequence ID" value="NC_003770.1"/>
    </dbReference>
    <dbReference type="GeneID" id="991203"/>
    <dbReference type="KEGG" id="vg:991203"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-1035">Host cytoplasm</keyword>
    <keyword id="KW-1037">Host cytoskeleton</keyword>
    <keyword id="KW-1152">Outer capsid protein</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403638" description="Microtubule-associated protein VP7">
        <location>
            <begin position="1"/>
            <end position="608"/>
        </location>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <sequence length="608" mass="68026" checksum="96C66C6210C30F2D" modified="1998-01-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>O56042</accession>
    <name>VP1_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Structural protein VP1</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="submission" date="1997-08" db="EMBL/GenBank/DDBJ databases">
            <title>Rice ragged stunt oryzavirus:complete sequence and genome organization.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Li Z."/>
                <person name="Ramm K."/>
                <person name="Yang M."/>
                <person name="Gellatly J.A."/>
                <person name="Kositratana W."/>
                <person name="Gerlach W.L."/>
                <person name="Waterhouse P.M."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="AF020334">
        <property type="protein sequence ID" value="AAC04672.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="PIR" id="T08608">
        <property type="entry name" value="T08608"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620514.1">
        <property type="nucleotide sequence ID" value="NC_003749.1"/>
    </dbReference>
    <dbReference type="SMR" id="O56042"/>
    <dbReference type="PRIDE" id="O56042"/>
    <dbReference type="GeneID" id="991195"/>
    <dbReference type="KEGG" id="vg:991195"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008580">
        <property type="entry name" value="PPPDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05903">
        <property type="entry name" value="Peptidase_C97"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51858">
        <property type="entry name" value="PPPDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-1152">Outer capsid protein</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403634" description="Structural protein VP1">
        <location>
            <begin position="1"/>
            <end position="1237"/>
        </location>
    </feature>
    <feature type="domain" description="PPPDE" evidence="1">
        <location>
            <begin position="1006"/>
            <end position="1222"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="1040"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="1192"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="1237" mass="137685" checksum="F8634A0A1160FBEA" modified="1998-06-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>O56043</accession>
    <name>VP2_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Outer capsid protein VP2</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName>mRNA guanylyltransferase</fullName>
                <ecNumber>2.7.7.50</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName>mRNA (guanine-N(7))-methyltransferase</fullName>
                <ecNumber>2.1.1.56</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name type="primary">S2</name>
    </gene>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="submission" date="1997-08" db="EMBL/GenBank/DDBJ databases">
            <title>Rice ragged stunt oryzavirus:complete sequence and genome organization.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Li Z."/>
                <person name="Ramm K."/>
                <person name="Yang M."/>
                <person name="Gellatly J.A."/>
                <person name="Kositratana W."/>
                <person name="Gerlach W.L."/>
                <person name="Waterhouse P.M."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <comment type="function">
        <text evidence="1">Outer capsid protein involved in mRNA capping. Catalyzes the last 3 enzymatic activities for formation of the 5' cap structure on the viral plus-strand transcripts, namely the RNA guanylyltransferase, RNA-7N- and RNA-2'O-methyltransferase activities.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction>
            <text>a 5'-end diphospho-ribonucleoside in mRNA + GTP + H(+) = a 5'-end (5'-triphosphoguanosine)-(ribonucleoside) in mRNA + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:67012"/>
            <dbReference type="Rhea" id="RHEA-COMP:17165"/>
            <dbReference type="Rhea" id="RHEA-COMP:17166"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:167616"/>
            <dbReference type="ChEBI" id="CHEBI:167617"/>
            <dbReference type="EC" id="2.7.7.50"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction>
            <text>a 5'-end (5'-triphosphoguanosine)-(ribonucleoside) in mRNA + S-adenosyl-L-methionine = a 5'-end (N(7)-methyl 5'-triphosphoguanosine)-ribonucleoside in mRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:67008"/>
            <dbReference type="Rhea" id="RHEA-COMP:17166"/>
            <dbReference type="Rhea" id="RHEA-COMP:17167"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:156461"/>
            <dbReference type="ChEBI" id="CHEBI:167617"/>
            <dbReference type="EC" id="2.1.1.56"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.7.50"/>
    <dbReference type="EC" id="2.1.1.56"/>
    <dbReference type="EMBL" id="AF020335">
        <property type="protein sequence ID" value="AAC04673.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="PIR" id="T08609">
        <property type="entry name" value="T08609"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620515.1">
        <property type="nucleotide sequence ID" value="NC_003750.1"/>
    </dbReference>
    <dbReference type="SMR" id="O56043"/>
    <dbReference type="GeneID" id="991196"/>
    <dbReference type="KEGG" id="vg:991196"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-1153">Inner capsid protein</keyword>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-0506">mRNA capping</keyword>
    <keyword id="KW-0507">mRNA processing</keyword>
    <keyword id="KW-0511">Multifunctional enzyme</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403635" description="Outer capsid protein VP2">
        <location>
            <begin position="1"/>
            <end position="1192"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1112"/>
            <end position="1192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1125"/>
            <end position="1185"/>
        </location>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="1192" mass="133081" checksum="E44C2EF707F72F7C" modified="1998-06-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>O56044</accession>
    <name>CAPSD_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Major inner capsid protein VP3</fullName>
        </recommendedName>
        <alternativeName>
            <fullName>Major core capsid protein VP3</fullName>
        </alternativeName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="submission" date="1997-08" db="EMBL/GenBank/DDBJ databases">
            <title>Rice ragged stunt oryzavirus:complete sequence and genome organization.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Li Z."/>
                <person name="Ramm K."/>
                <person name="Yang M."/>
                <person name="Gellatly J.A."/>
                <person name="Kositratana W."/>
                <person name="Gerlach W.L."/>
                <person name="Waterhouse P.M."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <comment type="function">
        <text evidence="1">Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 70 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="AF020336">
        <property type="protein sequence ID" value="AAC04674.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="PIR" id="T08610">
        <property type="entry name" value="T08610"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620516.1">
        <property type="nucleotide sequence ID" value="NC_003751.1"/>
    </dbReference>
    <dbReference type="SMR" id="O56044"/>
    <dbReference type="PRIDE" id="O56044"/>
    <dbReference type="GeneID" id="991197"/>
    <dbReference type="KEGG" id="vg:991197"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-1153">Inner capsid protein</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1141">T=2 icosahedral capsid protein</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403631" description="Major inner capsid protein VP3">
        <location>
            <begin position="1"/>
            <end position="1173"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="27"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="1173" mass="130853" checksum="9E863FAC66A8EB3C" modified="1998-06-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>O56045</accession>
    <name>MVP_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Movement and RNA silencing protein VP6</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="submission" date="1997-08" db="EMBL/GenBank/DDBJ databases">
            <title>Rice ragged stunt oryzavirus:complete sequence and genome organization.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Li Z."/>
                <person name="Ramm K."/>
                <person name="Yang M."/>
                <person name="Gellatly J.A."/>
                <person name="Kositratana W."/>
                <person name="Gerlach W.L."/>
                <person name="Waterhouse P.M."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <reference key="2">
        <citation type="journal article" date="2004" name="Acta Biochim. Biophys. Sin." volume="36" first="457" last="466">
            <title>Nucleic acid binding activity of pns6 encoded by genome segment 6 of rice ragged stunt oryzavirus.</title>
            <authorList>
                <person name="Shao C.G."/>
                <person name="Lu H.J."/>
                <person name="Wu J.H."/>
                <person name="Gong Z.X."/>
            </authorList>
            <dbReference type="PubMed" id="15248020"/>
            <dbReference type="DOI" id="10.1093/abbs/36.7.457"/>
        </citation>
        <scope>FUNCTION</scope>
    </reference>
    <reference key="3">
        <citation type="journal article" date="2010" name="Virus Res." volume="152" first="176" last="179">
            <title>Rice ragged stunt virus segment S6-encoded nonstructural protein Pns6 complements cell-to-cell movement of Tobacco mosaic virus-based chimeric virus.</title>
            <authorList>
                <person name="Wu Z."/>
                <person name="Wu J."/>
                <person name="Adkins S."/>
                <person name="Xie L."/>
                <person name="Li W."/>
            </authorList>
            <dbReference type="PubMed" id="20541571"/>
            <dbReference type="DOI" id="10.1016/j.virusres.2010.06.003"/>
        </citation>
        <scope>FUNCTION</scope>
        <scope>SUBCELLULAR LOCATION</scope>
    </reference>
    <reference key="4">
        <citation type="journal article" date="2010" name="Virol. J." volume="7" first="335" last="335">
            <title>Identification of Pns6, a putative movement protein of RRSV, as a silencing suppressor.</title>
            <authorList>
                <person name="Wu J."/>
                <person name="Du Z."/>
                <person name="Wang C."/>
                <person name="Cai L."/>
                <person name="Hu M."/>
                <person name="Lin Q."/>
                <person name="Wu Z."/>
                <person name="Li Y."/>
                <person name="Xie L."/>
            </authorList>
            <dbReference type="PubMed" id="21092155"/>
            <dbReference type="DOI" id="10.1186/1743-422X-7-335"/>
        </citation>
        <scope>FUNCTION</scope>
    </reference>
    <comment type="function">
        <text evidence="2 3 4">Transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Displays sequence non-specific nucleic acid binding activity. Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Host cell junction</location>
            <location evidence="3">Host plasmodesma</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="AF020337">
        <property type="protein sequence ID" value="AAC04675.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620517.1">
        <property type="nucleotide sequence ID" value="NC_003752.1"/>
    </dbReference>
    <dbReference type="GeneID" id="991198"/>
    <dbReference type="KEGG" id="vg:991198"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-1031">Host cell junction</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0941">Suppressor of RNA silencing</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <keyword id="KW-0916">Viral movement protein</keyword>
    <feature type="chain" id="PRO_0000403632" description="Movement and RNA silencing protein VP6">
        <location>
            <begin position="1"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="450"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000269" key="2">
        <source>
            <dbReference type="PubMed" id="15248020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000269" key="3">
        <source>
            <dbReference type="PubMed" id="20541571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000269" key="4">
        <source>
            <dbReference type="PubMed" id="21092155"/>
        </source>
    </evidence>
    <sequence length="592" mass="65767" checksum="D491BCC38272049F" modified="1998-06-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>O92604</accession>
    <name>RDRP_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>RNA-directed RNA polymerase</fullName>
            <ecNumber>2.7.7.48</ecNumber>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1998" name="Arch. Virol." volume="143" first="1815" last="1822">
            <title>Rice ragged stunt oryzavirus genome segment S4 could encode an RNA dependent RNA polymerase and a second protein of unknown function.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Ramm K."/>
                <person name="Gellatly J.A."/>
                <person name="Li Z."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9787664"/>
            <dbReference type="DOI" id="10.1007/s007050050419"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <comment type="function">
        <text evidence="1">RNA-directed RNA polymerase that is involved in transcription and genome replication. Following infection, it catalyzes the synthesis of fully conservative plus strands. After core assembly, which consists in recruitment of one capped plus-strand for each genomic segments and polymerase complexes, the polymerase switches mode and catalyzes the synthesis of complementary minus-strands.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.48"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.7.48"/>
    <dbReference type="EMBL" id="U66714">
        <property type="protein sequence ID" value="AAC36456.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620541.1">
        <property type="nucleotide sequence ID" value="NC_003771.1"/>
    </dbReference>
    <dbReference type="SMR" id="O92604"/>
    <dbReference type="GeneID" id="991204"/>
    <dbReference type="KEGG" id="vg:991204"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007097">
        <property type="entry name" value="RNA-dir_pol_reovirus"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50523">
        <property type="entry name" value="RDRP_DSRNA_REO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0696">RNA-directed RNA polymerase</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0693">Viral RNA replication</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403633" description="RNA-directed RNA polymerase">
        <location>
            <begin position="1"/>
            <end position="1255"/>
        </location>
    </feature>
    <feature type="domain" description="RdRp catalytic" evidence="1">
        <location>
            <begin position="548"/>
            <end position="756"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="1255" mass="141380" checksum="B33F3FA497643169" modified="1998-11-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>O92605</accession>
    <name>VP4B_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Uncharacterized protein VP4b</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1998" name="Arch. Virol." volume="143" first="1815" last="1822">
            <title>Rice ragged stunt oryzavirus genome segment S4 could encode an RNA dependent RNA polymerase and a second protein of unknown function.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Ramm K."/>
                <person name="Gellatly J.A."/>
                <person name="Li Z."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9787664"/>
            <dbReference type="DOI" id="10.1007/s007050050419"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <dbReference type="EMBL" id="U66714">
        <property type="protein sequence ID" value="AAC36457.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620542.1">
        <property type="nucleotide sequence ID" value="NC_003771.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="O92605"/>
    <dbReference type="GeneID" id="991205"/>
    <dbReference type="KEGG" id="vg:991205"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000403636" description="Uncharacterized protein VP4b">
        <location>
            <begin position="1"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="302"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="326" mass="36920" checksum="C1722C0343CD658C" modified="1998-11-01" version="1">MPSVRASDPKQQLYPIAELEQLSQEDVRNIAKTHRSPTLLRTQTKFCVGRRGELSYDTTLAPLQYSEPGDSILRGSDKQDGNDSSLSILSRLWCYGVSRRKAQASEIDSELVARGISKVLEDSHAKLDGFGSHQLYDSQTYNDYYSRSAGNQISERGEGGERSNLFIAVHKPRHPQSYQPVSDPSVLAGYESVRERRDVFRFGGGTNFEQGGSTENRGNYSEIPELTLLNYEQGTHSSLITERDGYKFWSGMSICETIYTATRDEIEEYELSRGIHSVPNIIELRQRLRRRSHRNYDANHSTSGEEENSGSRSRIAELSQSTIHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2019-09-18" modified="2020-08-12" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>Q76VJ7</accession>
    <name>Q76VJ7_RRSVT</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Spike protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">structural polypeptide</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="1995" name="Arch. Virol." volume="140" first="1945" last="1956">
            <title>Molecular analysis of rice ragged stunt oryzavirus segment 9 and sequence conservation among isolates from Thailand and India.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Yang M."/>
                <person name="Kositratana W."/>
                <person name="Ghosh A."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="7503693"/>
            <dbReference type="DOI" id="10.1007/BF01322684"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">Isolate Thailand</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="journal article" date="1996" name="Arch. Virol." volume="141" first="1689" last="1701">
            <title>The M(r) 43K major capsid protein of rice ragged stunt oryzavirus is a post-translationally processed product of a M(r) 67,348 polypeptide encoded by genome segment 8.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Zinkowsky E."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="8893791"/>
            <dbReference type="DOI" id="10.1007/BF01718292"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">Isolate Thailand</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="journal article" date="1996" name="J. Gen. Virol." volume="77" first="3155" last="3160">
            <title>Genome segment 5 of rice ragged stunt virus encodes a virion protein.</title>
            <authorList>
                <person name="Li Z."/>
                <person name="Upadhyaya N.M."/>
                <person name="Kositratana W."/>
                <person name="Gibbs A.J."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9000111"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">Isolate Thailand</strain>
        </source>
    </reference>
    <reference evidence="2" key="4">
        <citation type="journal article" date="1997" name="Arch. Virol." volume="142" first="1719" last="1726">
            <title>Rice ragged stunt oryzavirus genome segments S7 and S10 encode non-structural proteins of M(r) 68,025 (Pns7) and M(r) 32,364 (Pns10).</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Ramm K."/>
                <person name="Gellatly J.A."/>
                <person name="Li Z."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9672632"/>
            <dbReference type="DOI" id="10.1007/s007050050193"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">Isolate Thailand</strain>
        </source>
    </reference>
    <reference evidence="2" key="5">
        <citation type="journal article" date="1998" name="Arch. Virol." volume="143" first="1815" last="1822">
            <title>Rice ragged stunt oryzavirus genome segment S4 could encode an RNA dependent RNA polymerase and a second protein of unknown function.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Ramm K."/>
                <person name="Gellatly J.A."/>
                <person name="Li Z."/>
                <person name="Kositratana W."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9787664"/>
            <dbReference type="DOI" id="10.1007/s007050050419"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">Isolate Thailand</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="L38899">
        <property type="protein sequence ID" value="AAA85465.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="PIR" id="JC5683">
        <property type="entry name" value="JC5683"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620527.1">
        <property type="nucleotide sequence ID" value="NC_003757.1"/>
    </dbReference>
    <dbReference type="GeneID" id="991199"/>
    <dbReference type="KEGG" id="vg:991199"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="AAA85465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000348"/>
        </source>
    </evidence>
    <sequence length="338" mass="38566" checksum="7D9335E647DE4480" modified="2019-09-18" version="1">MKTAFARDPFTAPATGTYGTIYASRSLPRLSISKFLEDANPEIYELSRYEALGTNRPSSGKRAMQPAVSKPALLETVFTLDIWYRRTNNQNIGNLRDSVSRFLSDDRVREAVMVRLDLDIVVQLKEYWLIVKDKEAQTFADRLAFDSHLFVNRGENANYDLVTQTFIPSDAFLKDNFKTEALKKLLLSVQNHTGLDAGLQGDSSKATYNIGLGQYLEDEALLYRQGVALQQMAFAELELARGAEKEAFPSTFDLSNRPACNLILKRTCKWYQQTFKAEERKEFAKSLWVDDFAEANWNTGNLSFGFSTTLNVIERWRLTRFYVHMYSSVHIYSQKASG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2022-02-23" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>Q86281</accession>
    <name>VP5_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Putative minor structural protein VP5</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1996" name="J. Gen. Virol." volume="77" first="3155" last="3160">
            <title>Genome segment 5 of rice ragged stunt virus encodes a virion protein.</title>
            <authorList>
                <person name="Li Z."/>
                <person name="Upadhyaya N.M."/>
                <person name="Kositratana W."/>
                <person name="Gibbs A.J."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="9000111"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="U33633">
        <property type="protein sequence ID" value="AAB49578.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="NP_620529.1">
        <property type="nucleotide sequence ID" value="NC_003759.1"/>
    </dbReference>
    <dbReference type="GeneID" id="991201"/>
    <dbReference type="KEGG" id="vg:991201"/>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-1152">Outer capsid protein</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403637" description="Putative minor structural protein VP5">
        <location>
            <begin position="1"/>
            <end position="808"/>
        </location>
    </feature>
    <evidence type="ECO:0000305" key="1"/>
    <sequence length="808" mass="91328" checksum="D3F3E04111E6C3DB" modified="1996-11-01" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-01-11" modified="2020-08-12" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>Q86287</accession>
    <name>VP9_RRSVT</name>
    <protein>
        <recommendedName>
            <fullName>Structural protein VP9</fullName>
        </recommendedName>
    </protein>
    <organism>
        <name type="scientific">Rice ragged stunt virus (isolate Thailand)</name>
        <name type="common">RRSV</name>
        <dbReference type="NCBI Taxonomy" id="649603"/>
        <lineage>
            <taxon>Viruses</taxon>
            <taxon>Riboviria</taxon>
            <taxon>Orthornavirae</taxon>
            <taxon>Duplornaviricota</taxon>
            <taxon>Resentoviricetes</taxon>
            <taxon>Reovirales</taxon>
            <taxon>Reoviridae</taxon>
            <taxon>Spinareovirinae</taxon>
            <taxon>Oryzavirus</taxon>
        </lineage>
    </organism>
    <organismHost>
        <name type="scientific">Oryza rufipogon</name>
        <name type="common">Brownbeard rice</name>
        <name type="synonym">Asian wild rice</name>
        <dbReference type="NCBI Taxonomy" id="4529"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza latifolia</name>
        <dbReference type="NCBI Taxonomy" id="4534"/>
    </organismHost>
    <organismHost>
        <name type="scientific">Oryza nivara</name>
        <name type="common">Indian wild rice</name>
        <name type="synonym">Oryza sativa f. spontanea</name>
        <dbReference type="NCBI Taxonomy" id="4536"/>
    </organismHost>
    <reference key="1">
        <citation type="journal article" date="1995" name="Arch. Virol." volume="140" first="1945" last="1956">
            <title>Molecular analysis of rice ragged stunt oryzavirus segment 9 and sequence conservation among isolates from Thailand and India.</title>
            <authorList>
                <person name="Upadhyaya N.M."/>
                <person name="Yang M."/>
                <person name="Kositratana W."/>
                <person name="Ghosh A."/>
                <person name="Waterhouse P.M."/>
            </authorList>
            <dbReference type="PubMed" id="7503693"/>
            <dbReference type="DOI" id="10.1007/BF01322684"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [GENOMIC RNA]</scope>
    </reference>
    <reference key="2">
        <citation type="journal article" date="1999" name="Acta Biochim. Biophys. Sin." volume="31" first="180" last="184">
            <title>Localization of PS9 in rice ragged stunt oryzavirus and its role in virus transmission by Brown Planthopper.</title>
            <authorList>
                <person name="Lu X.B."/>
                <person name="Peng B.Z."/>
                <person name="Zhou G.Y."/>
                <person name="Jin D.D."/>
                <person name="Chen S.X."/>
                <person name="Gong Z.X."/>
            </authorList>
            <dbReference type="PubMed" id="12136212"/>
        </citation>
        <scope>FUNCTION</scope>
        <scope>SUBCELLULAR LOCATION</scope>
    </reference>
    <comment type="function">
        <text evidence="1">Plays an important role in virus transmission by the insect vector. May participate in the virus stability by binding clamp proteins and surrounding the pentameric turrets present in the virion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Virion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="L38900">
        <property type="protein sequence ID" value="AAA85466.1"/>
        <property type="molecule type" value="Genomic_RNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000348">
        <property type="component" value="Genome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword id="KW-0167">Capsid protein</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0946">Virion</keyword>
    <feature type="chain" id="PRO_0000403640" description="Structural protein VP9">
        <location>
            <begin position="1"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000269" key="1">
        <source>
            <dbReference type="PubMed" id="12136212"/>
        </source>
    </evidence>
    <sequence length="338" mass="38569" checksum="972EEF925D279EBC" modified="1996-11-01" version="1">MKTAFARDPFTAPATGTYGTIYASRSLPRLSISKFLEDANPEIYELSRYEALGTNRPSSGKRAMQPAVSKPALLETVFTLDIWYRRTNNQNIGNLRDSVSRFLSDDRVREAVMVRLDLDIVVQLKEYWLIVKDKEAQTFADRLAFDSHLFVNRGENANYDLVTQTFIPSDTFLKDNFKTEALKKLLLSVQSHTGLDAGLQGDSSKATYNIGLGQYLEDEALLYRQGVALQQMAFAELELARGAEKEAFPSTFDLSNRPACNLILKRTCKWYQQTFKAEERKEFAKSLWVDDFAEANWNTGNLSFGFSTTLNVIERWRLTRFYVHMYSSVHIYSQKASG</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>