#ncbi_taxid	cluster_id	cluster_size	best_described_by
1094556	CL:0	1671	mixed, incl. Membrane, and Cytoplasm
1094556	CL:10	1646	mixed, incl. Membrane, and Cytoplasm
1094556	CL:100	31	rRNA-binding
1094556	CL:1001	5	Pyridine nucleotide biosynthesis, and NAD kinase
1094556	CL:1016	31	Purine biosynthesis, and Pyrimidine biosynthesis
1094556	CL:1017	20	Purine biosynthesis, and Ham1 family
1094556	CL:102	18	rRNA-binding
1094556	CL:1020	10	Purine biosynthesis
1094556	CL:1021	5	PurM-like, C-terminal domain, and DJ-1/PfpI family
1094556	CL:1030	5	Rudiment single hybrid motif, and PurE domain
1094556	CL:1046	5	GMP biosynthesis, and Ham1 family
1094556	CL:1056	11	Pyrimidine biosynthesis, and Flavin reductase like domain
1094556	CL:1058	6	Pyrimidine biosynthesis
1094556	CL:1078	14	Isoprene biosynthesis, and Ubiquinone biosynthesis
1094556	CL:1080	5	Isoprene biosynthesis
1094556	CL:1096	5	Ubiquinone biosynthesis, and Ubiquinone biosynthesis hydroxylase UbiH/COQ6
1094556	CL:1110	20	mixed, incl. Phospholipid biosynthesis, and HPr-like superfamily
1094556	CL:1111	11	mixed, incl. Phospholipid biosynthesis, and HPr-like superfamily
1094556	CL:1112	6	Phospholipid biosynthesis, and Acyltransferase
1094556	CL:1123	5	HPr-like superfamily, and PTS system fructose IIA component
1094556	CL:1133	6	CDP-alcohol phosphatidyltransferase, and Zymogen
1094556	CL:1149	18	mixed, incl. rRNA processing, and Proline biosynthesis
1094556	CL:1151	10	mixed, incl. Proline biosynthesis, and CCB3/YggT
1094556	CL:1153	5	mixed, incl. Peptidase family S41, and RNA methyltransferase RlmH
1094556	CL:1171	7	mixed, incl. Alpha/beta knot methyltransferases, and Tetrapyrrole methylase
1094556	CL:1184	74	mixed, incl. Cell division, and Lipid A biosynthesis
1094556	CL:1185	50	mixed, incl. Cell wall biogenesis/degradation, and Beta-lactamase/transpeptidase-like
1094556	CL:1186	44	mixed, incl. Cell wall biogenesis/degradation, and Beta-lactamase/transpeptidase-like
1094556	CL:1187	34	mixed, incl. Cell wall biogenesis/degradation, and Beta-lactamase/transpeptidase-like
1094556	CL:1189	26	mixed, incl. Cell wall biogenesis/degradation, and Beta-lactamase/transpeptidase-like
1094556	CL:1190	17	Peptidoglycan synthesis, and Cell division
1094556	CL:1193	11	Peptidoglycan synthesis
1094556	CL:1195	5	Mur ligase, central, and Glycosyl transferase family 4
1094556	CL:12	1639	mixed, incl. Membrane, and Cytoplasm
1094556	CL:1225	7	Beta-lactamase/transpeptidase-like, and Ami_3
1094556	CL:1241	7	mixed, incl. PGBD superfamily, and SGNH hydrolase superfamily
1094556	CL:1254	10	mixed, incl. Nucleotidyl transferase, and YebC-like
1094556	CL:1257	5	Nucleotidyl transferase, and GlmS/AgaS, SIS domain 1
1094556	CL:1273	6	mixed, incl. Multi-copper polyphenol oxidoreductase, and Prolipoprotein diacylglyceryl transferase
1094556	CL:1285	23	mixed, incl. Lipid A biosynthesis, and Lipopolysaccharide biosynthesis
1094556	CL:1287	11	Lipid A biosynthesis, and Lipopolysaccharide biosynthesis
1094556	CL:1288	6	Lipid A biosynthesis
1094556	CL:1299	5	Lipopolysaccharide biosynthesis, and Tetraacyldisaccharide 4'-kinase
1094556	CL:1309	11	mixed, incl. MotA/TolQ/ExbB proton channel, and Biopolymer transport protein ExbD/TolR
1094556	CL:1311	6	MotA/TolQ/ExbB proton channel, and Biopolymer transport protein ExbD/TolR
1094556	CL:1332	11	mostly uncharacterized, incl. MPN domain, and Asp/Glu racemase
1094556	CL:1333	6	mixed, incl. Glutaredoxin, GrxC, and Competence protein
1094556	CL:1344	5	mixed, incl. MPN domain, and Asp/Glu racemase
1094556	CL:1360	47	mixed, incl. Quinone, and Proton-conducting membrane transporter
1094556	CL:1361	41	mixed, incl. Quinone, and Proton-conducting membrane transporter
1094556	CL:1362	34	mixed, incl. Quinone, and Proton-conducting membrane transporter
1094556	CL:1365	25	mixed, incl. Quinone, and Heme
1094556	CL:1366	20	Quinone, and Respiratory chain
1094556	CL:1367	14	Quinone, and NADH:ubiquinone oxidoreductase
1094556	CL:1368	8	Quinone, and NADH:ubiquinone oxidoreductase
1094556	CL:1383	6	Quinone
1094556	CL:1395	5	Respiratory chain, and Cytochrome c oxidase subunit III
1094556	CL:14	1633	mixed, incl. Membrane, and Cytoplasm
1094556	CL:1405	5	Cytochrome b/b6/petB, and Cytochrome c-like domain
1094556	CL:1419	5	Proton-conducting membrane transporter, and Na+/H+ antiporter subunit
1094556	CL:1430	6	mixed, incl. TRCF domain, and Flavinator of succinate dehydrogenase
1094556	CL:144	9	rRNA-binding
1094556	CL:1443	5	mixed, incl. SCO1/SenC, and Aminopeptidase P
1094556	CL:1453	44	mixed, incl. CheY-like superfamily, and Histidine kinase/HSP90-like ATPase superfamily
1094556	CL:1456	32	CheY-like superfamily, and Histidine kinase domain
1094556	CL:1457	25	CheY-like superfamily, and His Kinase A (phosphoacceptor) domain
1094556	CL:1459	17	Two-component regulatory system, and His Kinase A (phosphoacceptor) domain
1094556	CL:1461	12	Two-component regulatory system, and His Kinase A (phosphoacceptor) domain
1094556	CL:1463	6	His Kinase A (phosphoacceptor) domain, and Signal transduction response regulator, C-terminal effector
1094556	CL:1495	6	Potassium transport, and Sigma-54 interaction domain
1094556	CL:1508	5	Histidine kinase, and Sigma-70, region 4
1094556	CL:1526	6	Trypsin, and AAA C-terminal domain
1094556	CL:1540	23	mixed, incl. Pyridoxine biosynthesis, and Ribokinase-like
1094556	CL:1542	17	mixed, incl. Ribokinase-like, and Metalloprotease TldD/PmbA
1094556	CL:1543	12	mixed, incl. Ribokinase-like, and Metalloprotease TldD/PmbA
1094556	CL:1545	7	mixed, incl. Ribokinase-like, and Thiamine biosynthesis
1094556	CL:1566	5	mixed, incl. Glycine zipper, and PAP2 superfamily
1094556	CL:1576	5	Pyridoxine biosynthesis, and Phosphoserine aminotransferase
1094556	CL:1586	23	mixed, incl. Winged helix DNA-binding domain superfamily, and Cysteine desulfurase
1094556	CL:1589	10	mixed, incl. Cysteine desulfurase, and SUF system FeS cluster assembly, SufBD
1094556	CL:1592	5	SUF system FeS cluster assembly, SufBD, and Cysteine desulfurase, SufS
1094556	CL:16	1627	mixed, incl. Membrane, and Cytoplasm
1094556	CL:1611	10	mixed, incl. Ferric-uptake regulator, and MatE
1094556	CL:1613	5	mixed, incl. UspA, and Sulfite exporter TauE/SafE
1094556	CL:1639	5	mixed, incl. AFG1-like ATPase, and MiaB-like tRNA modifying enzyme
1094556	CL:1652	12	mixed, incl. Phosphate transport, and Ppx/GppA phosphatase
1094556	CL:1654	5	Phosphate transport, and PBP domain
1094556	CL:1678	18	mixed, incl. Cytochrome c-type biogenesis, and Thioredoxin domain
1094556	CL:1679	13	mixed, incl. Cytochrome c-type biogenesis, and Redoxin
1094556	CL:168	5	mixed, incl. Ribosomal protein L9, and Ribosomal protein L1
1094556	CL:1682	7	Cytochrome c-type biogenesis, and CcmH/CycL/Ccl2/NrfF family
1094556	CL:1704	5	Thioredoxin, and Disulphide bond corrector protein DsbC
1094556	CL:1718	251	mixed, incl. Membrane, and Signal
1094556	CL:1719	245	mixed, incl. Membrane, and Signal
1094556	CL:1721	231	mixed, incl. Transmembrane, and Signal
1094556	CL:1722	226	mixed, incl. Transmembrane, and Signal
1094556	CL:1724	153	mixed, incl. Signal, and Coiled coil
1094556	CL:1725	129	mixed, incl. Signal, and Coiled coil
1094556	CL:1727	108	mixed, incl. Signal, and Coiled stalk of trimeric autotransporter adhesin
1094556	CL:1728	102	mixed, incl. Signal, and Coiled stalk of trimeric autotransporter adhesin
1094556	CL:1729	77	mixed, incl. Signal, and Coiled stalk of trimeric autotransporter adhesin
1094556	CL:1731	44	mixed, incl. Signal, and SurA N-terminal domain
1094556	CL:1732	31	mostly uncharacterized, incl. OmpA-like transmembrane domain, and SurA N-terminal domain
1094556	CL:1734	20	mixed, incl. OmpA-like transmembrane domain, and Invasion protein B
1094556	CL:1736	13	mixed, incl. Porin subfamily, and AsmA
1094556	CL:1739	5	Porin subfamily, and AsmA
1094556	CL:1750	6	mixed, incl. Protein of unknown function DUF1849, and Opacity family porin protein
1094556	CL:1762	6	mixed, incl. PIF1-like helicase, and Cell division protein ZapA
1094556	CL:178	7	mixed, incl. L28p-like, and Zinc-binding ribosomal protein
1094556	CL:1781	5	Permease LptG/LptF-related, and LptD, C-terminal
1094556	CL:1795	10	mixed, incl. C-type lysozyme inhibitor, and HemY, N-terminal
1094556	CL:1798	5	mixed, incl. Protease inhibitor Inh, and Jann4075-like superfamily
1094556	CL:1819	32	mixed, incl. Coiled stalk of trimeric autotransporter adhesin, and P22 tailspike-like, C-terminal domain superfamily
1094556	CL:1821	26	mixed, incl. P22 tailspike-like, C-terminal domain superfamily, and Phage P22-like portal protein
1094556	CL:1823	19	mixed, incl. P22 tailspike-like, C-terminal domain superfamily, and Phage P22-like portal protein
1094556	CL:1826	14	mixed, incl. P22 tailspike-like, C-terminal domain superfamily, and Protein of unknown function DUF4043
1094556	CL:1828	8	mixed, incl. Sporulation-like domain, and Peptidoglycan binding-like
1094556	CL:1863	5	mixed, incl. LexA-like, and Fido domain
1094556	CL:1873	5	Coiled stalk of trimeric autotransporter adhesin
1094556	CL:1883	23	mostly uncharacterized, incl. Phosphoesterase, HXTX, and TM2 domain
1094556	CL:1885	18	mostly uncharacterized, incl. Phosphoesterase, HXTX, and TM2 domain
1094556	CL:1887	10	mixed, incl. Domain of unknown function DUF1214, and Protein of unknown function DUF2125
1094556	CL:1888	5	mixed, incl. Domain of unknown function DUF1214, and Protein of unknown function DUF1499
1094556	CL:1897	5	mixed, incl. Protein of unknown function DUF2125, and BA14k family
1094556	CL:1910	5	mixed, incl. TM2 domain, and SNase-like, OB-fold superfamily
1094556	CL:1932	5	mixed, incl. Cell Wall Hydrolase, and Translocation and assembly module TamB
1094556	CL:1945	19	mixed, incl. YqaJ viral recombinase, and AntA/AntB antirepressor
1094556	CL:1946	12	mixed, incl. AntA/AntB antirepressor, and ERF superfamily
1094556	CL:1947	7	mixed, incl. AntA/AntB antirepressor, and ERF superfamily
1094556	CL:1960	5	mixed, incl. Protein of unknown function DUF1376, and Helix-turn-helix
1094556	CL:1970	5	Essential recombination function protein, and AntA/AntB antirepressor
1094556	CL:1982	24	mostly uncharacterized, incl. Lysozyme-like domain superfamily, and Phage P22-like portal protein
1094556	CL:1984	19	mostly uncharacterized, incl. Lysozyme-like domain superfamily, and Phage P22-like portal protein
1094556	CL:1986	14	mixed, incl. Lysozyme-like domain superfamily, and Protein of unknown function DUF4043
1094556	CL:1989	7	mostly uncharacterized, incl. Transglycosylase SLT domain
1094556	CL:20	1622	mixed, incl. Membrane, and Cytoplasm
1094556	CL:2036	69	mostly uncharacterized, incl. Lambda repressor-like, DNA-binding domain superfamily, and S-adenosyl-L-methionine-dependent methyltransferase
1094556	CL:2038	41	mixed, incl. Lambda repressor-like, DNA-binding domain superfamily, and S-adenosyl-L-methionine-dependent methyltransferase
1094556	CL:2040	31	mixed, incl. Lambda repressor-like, DNA-binding domain superfamily, and PD-(D/E)XK nuclease superfamily
1094556	CL:2041	20	mixed, incl. Helix-turn-helix, and PD-(D/E)XK nuclease superfamily
1094556	CL:2042	11	mixed, incl. PD-(D/E)XK nuclease superfamily, and SspB-like superfamily
1094556	CL:2045	5	PD-(D/E)XK nuclease superfamily, and Azospirillum phage Cd, Gp10
1094556	CL:2064	5	Methyltransferase domain, and Cro/C1-type HTH DNA-binding domain
1094556	CL:2080	11	mixed, incl. Class I glutamine amidotransferase-like, and ATPase, AAA-3
1094556	CL:2082	6	mixed, incl. Class I glutamine amidotransferase-like, and ATPase, AAA-3
1094556	CL:2107	5	mixed, incl. CbbQ/NirQ/NorQ, C-terminal, and von Willebrand factor, type A
1094556	CL:2122	26	mostly uncharacterized, incl. HD domain, and Peptidase M29
1094556	CL:2124	12	mostly uncharacterized, incl. Peptidase M29, and Zinc-finger domain
1094556	CL:2126	5	mixed, incl. Peptidase M29, and Zinc-finger domain
1094556	CL:2138	5	mixed, incl. Heparinase II/III-like, and Protein of unknown function DUF1674
1094556	CL:2150	12	mostly uncharacterized, incl. HD domain, and YgfZ/GcvT conserved site
1094556	CL:2153	7	mixed, incl. GcrA cell cycle regulator, and Protein of unknown function DUF2093
1094556	CL:217	6	Translocation
1094556	CL:2173	5	CobW/HypB/UreG, nucleotide-binding domain, and WD40 repeat
1094556	CL:2190	6	mixed, incl. TonB box, and TonB C terminal
1094556	CL:2209	5	mixed, incl. Phage terminase large subunit, and Coiled coil
1094556	CL:2219	54	mixed, incl. MFS transporter superfamily, and HlyD family secretion protein
1094556	CL:2220	43	mixed, incl. MFS transporter superfamily, and HlyD family secretion protein
1094556	CL:2223	38	mixed, incl. Major facilitator superfamily domain, and HlyD family secretion protein
1094556	CL:2225	26	mixed, incl. Major facilitator superfamily domain, and Barrel-sandwich domain of CusB or HlyD membrane-fusion
1094556	CL:2227	20	mixed, incl. MFS transporter superfamily, and Barrel-sandwich domain of CusB or HlyD membrane-fusion
1094556	CL:2231	11	mixed, incl. Barrel-sandwich domain of CusB or HlyD membrane-fusion, and Outer membrane efflux protein
1094556	CL:2233	6	Outer membrane efflux protein, and RND efflux pump, membrane fusion protein, barrel-sandwich domain
1094556	CL:2257	5	Sec-independent protein translocase protein TatA/B/E, and Protein-L-isoaspartate(D-aspartate) O-methyltransferase
1094556	CL:2283	5	ABC transporter type 1, transmembrane domain, and RTX secretion protein D, Gram-negative bacteria
1094556	CL:23	1608	mixed, incl. Membrane, and Cytoplasm
1094556	CL:2305	11	mixed, incl. Antiport, and Mechanosensitive ion channel
1094556	CL:2307	5	mixed, incl. Cation/H+ exchanger, and Lysylphosphatidylglycerol synthase TM region
1094556	CL:2326	6	mixed, incl. Uracil-DNA glycosylase-like, and EamA domain
1094556	CL:2337	6	mixed, incl. Nitroreductase, and Cobalamin biosynthesis
1094556	CL:2348	47	mixed, incl. ABC transporter-like, and MetI-like superfamily
1094556	CL:2349	26	mixed, incl. ABC transporter-like, and ABC 3 transport family
1094556	CL:2350	18	mixed, incl. ABC 3 transport family, and ABC transporter-like
1094556	CL:2352	7	ABC 3 transport family, and Adhesin B
1094556	CL:237	11	mixed, incl. DNA-directed RNA polymerase, and Sigma-70 factor, region 1.2
1094556	CL:2371	6	mixed, incl. Sugar transport, and Peptidase family M3
1094556	CL:2387	5	mixed, incl. BioY family, and Cobalt transport protein
1094556	CL:2400	21	mixed, incl. Bacterial periplasmic substrate-binding proteins, and Amino acid ABC transporter, permease protein, 3-TM domain
1094556	CL:2401	16	mixed, incl. Bacterial periplasmic substrate-binding proteins, and Amino acid ABC transporter, permease protein, 3-TM domain
1094556	CL:2402	10	Bacterial periplasmic substrate-binding proteins, and Amino acid ABC transporter, permease protein, 3-TM domain
1094556	CL:2404	5	Bacterial periplasmic substrate-binding proteins, and Amino acid ABC transporter, permease protein, 3-TM domain
1094556	CL:241	5	DNA-directed RNA polymerase
1094556	CL:2422	5	ABC transporter, permease, and Periplasmic binding protein
1094556	CL:2432	5	mixed, incl. ABC transporter substrate binding protein, and ABC transporter-like
1094556	CL:2441	90	mixed, incl. Integrase, DNA-binding domain superfamily, and Protein of unknown function DUF3987)
1094556	CL:2442	58	mixed, incl. Protein of unknown function DUF3987), and Signal
1094556	CL:2443	43	mixed, incl. Protein of unknown function DUF3987), and Signal
1094556	CL:2444	36	mixed, incl. Protein of unknown function DUF3987), and Signal
1094556	CL:2445	29	mixed, incl. Protein of unknown function DUF3987), and Replication protein C
1094556	CL:2446	22	mixed, incl. Protein of unknown function DUF3987), and Toprim domain
1094556	CL:2447	17	mixed, incl. Protein of unknown function DUF3987), and Autotransporter beta-domain
1094556	CL:2449	11	mostly uncharacterized, incl. AAA ATPase domain, and Bacteriophage CI repressor helix-turn-helix domain
1094556	CL:2452	5	mixed, incl. AAA ATPase domain, and BA14k family
1094556	CL:2480	5	mixed, incl. Toprim-like, and Helix-turn-helix domain
1094556	CL:2489	7	mixed, incl. Replication protein C, and Signal
1094556	CL:2503	6	mixed, incl. RecT family, and Putative phage-type endonuclease
1094556	CL:2516	5	uncharacterized
1094556	CL:2529	13	mixed, incl. ParE toxin of type II toxin-antitoxin system, parDE, and Toxin HigB-2
1094556	CL:2531	6	mixed, incl. mRNA interferase PemK-like, and SpoVT-AbrB domain superfamily
1094556	CL:2545	5	mixed, incl. Toxin HigB-2, and RelB antitoxin
1094556	CL:2558	29	mixed, incl. Integrase, DNA-binding domain superfamily, and Bacterial DNA-binding protein
1094556	CL:2561	23	mixed, incl. Integrase, DNA-binding domain superfamily, and Bacterial DNA-binding protein
1094556	CL:2565	16	Integrase, DNA-binding domain superfamily, and Bacterial DNA-binding protein
1094556	CL:2569	11	Bacterial DNA-binding protein, and Integrase, DNA-binding domain superfamily
1094556	CL:2571	5	Integrase, DNA-binding domain superfamily, and Integrase/recombinase, N-terminal
1094556	CL:2620	5	mixed, incl. HTH domain, and Dimeric alpha-beta barrel
1094556	CL:2629	32	mixed, incl. DNA methylase, N-6 adenine-specific, conserved site, and Restriction endonuclease
1094556	CL:263	10	ATP synthesis
1094556	CL:2631	22	mixed, incl. DNA methylase, N-6 adenine-specific, conserved site, and Restriction endonuclease
1094556	CL:2636	14	mixed, incl. Restriction endonuclease, and N-6 DNA Methylase
1094556	CL:2639	5	mixed, incl. N-6 DNA Methylase, and DNA methylase, N-6 adenine-specific, conserved site
1094556	CL:2653	5	Restriction endonuclease, and N-6 DNA Methylase
1094556	CL:267	5	CF(1)
1094556	CL:2681	6	mixed, incl. DNA methylase, and SinI-like, DNA-binding domain
1094556	CL:2693	11	mixed, incl. Solute-binding protein family 5 domain, and Adenine-specific methyltransferase, domain 2
1094556	CL:2696	5	mixed, incl. Oligopeptide transport permease C-like, N-terminal domain, and Solute-binding protein family 5
1094556	CL:27	1603	mixed, incl. Membrane, and Cytoplasm
1094556	CL:2721	19	Trimeric LpxA-like superfamily
1094556	CL:2723	13	Trimeric LpxA-like superfamily
1094556	CL:2726	7	Trimeric LpxA-like superfamily
1094556	CL:2765	130	mostly uncharacterized, incl. Coiled coil, and AntA/AntB antirepressor
1094556	CL:2766	118	mostly uncharacterized, incl. Coiled coil, and Phage tail collar domain
1094556	CL:2767	106	mostly uncharacterized, incl. Coiled coil, and Phage tail collar domain
1094556	CL:2768	74	mostly uncharacterized, incl. Phage tail collar domain, and Coiled coil
1094556	CL:2770	53	mostly uncharacterized, incl. Gp5 N-terminal, and B transposition protein, C-terminal
1094556	CL:2771	31	mostly uncharacterized, incl. Gp5 N-terminal, and Phage late control gene D protein (GPD)
1094556	CL:2773	20	mostly uncharacterized, incl. Phage P2 GpU, and Tail protein I
1094556	CL:2775	12	mostly uncharacterized, incl. Tail protein I, and Gp25-like family
1094556	CL:2777	5	mixed, incl. Bacteriophage Mu, Gp36, and Mu-like prophage I protein
1094556	CL:2788	5	mixed, incl. Tail protein I, and Gp25-like family
1094556	CL:2799	7	mixed, incl. Phage P2 GpU, and Tail tube protein
1094556	CL:2819	5	mixed, incl. IraD/Gp25-like, and Phage baseplate assembly protein V/Gp45
1094556	CL:2832	22	mostly uncharacterized, incl. Bacteriophage B3, Orf6, and Bacteriophage Mu, Gp28
1094556	CL:2834	13	mostly uncharacterized, incl. Bacteriophage B3, Orf6, and Bacteriophage Mu, Gp28
1094556	CL:2836	5	mixed, incl. Bacteriophage Mu, Gp28, and Bacteriophage Mu, Gp27
1094556	CL:284	6	mixed, incl. PP-loop family, and Asparagine synthase
1094556	CL:2850	5	mixed, incl. Bacteriophage Mu, Gp25, and Lysozyme-like domain superfamily
1094556	CL:2865	5	mixed, incl. ParB/Sulfiredoxin, and Mu-type HTH domain
1094556	CL:2882	17	mixed, incl. Phage tail collar domain, and Transducer
1094556	CL:2885	12	mixed, incl. Phage tail collar domain, and Transducer
1094556	CL:2886	6	mostly uncharacterized, incl. Coiled coil
1094556	CL:2897	6	Phage tail collar domain, and Transducer
1094556	CL:2915	32	mostly uncharacterized, incl. Protein of unknown function DUF1376, and Bacteriophage protein C
1094556	CL:2916	17	mostly uncharacterized, incl. Protein of unknown function DUF1376, and Phage regulatory protein Rha (Phage_pRha)
1094556	CL:2920	7	mixed, incl. Protein of unknown function DUF1376, and Ribonuclease H superfamily
1094556	CL:2937	5	mixed, incl. Phage regulatory protein Rha (Phage_pRha), and RecT family
1094556	CL:2949	15	mostly uncharacterized, incl. Bacteriophage protein C, and Major capsid protein GpE
1094556	CL:2952	5	mixed, incl. Bacteriophage protein C, and Major capsid protein GpE
1094556	CL:2967	6	mixed, incl. Endolysin/autolysin, and Transmembrane helix
1094556	CL:2978	12	mixed, incl. Phage terminase large subunit, and Phage tail collar domain
1094556	CL:2981	5	mixed, incl. Phage tail collar domain
1094556	CL:3001	12	mixed, incl. AntA/AntB antirepressor, and Antirepressor protein, C-terminal
1094556	CL:3004	5	mixed, incl. Antirepressor protein, C-terminal, and AntA/AntB antirepressor
1094556	CL:301	23	Aminoacyl-tRNA synthetase, and Amidase
1094556	CL:3025	90	mixed, incl. Signal, and TrbC/VIRB2 family
1094556	CL:3026	71	mixed, incl. TrbC/VIRB2 family, and Signal
1094556	CL:3027	59	mixed, incl. TrbC/VIRB2 family, and Signal
1094556	CL:3028	50	mixed, incl. TrbC/VIRB2 family, and Signal
1094556	CL:3029	27	mostly uncharacterized, incl. TrbC/VIRB2 family, and Type IV secretion system protein VirB11
1094556	CL:303	18	Aminoacyl-tRNA synthetase
1094556	CL:3030	18	mixed, incl. Type IV secretion system protein VirB11, and P-type conjugative transfer protein VirB9
1094556	CL:3033	10	mixed, incl. Type IV secretion system protein VirB11, and P-type conjugative transfer protein VirB9
1094556	CL:3034	5	mixed, incl. Type IV secretion system protein VirB11, and P-type conjugative transfer protein VirB9
1094556	CL:3043	5	mixed, incl. CagE, TrbE, VirB component of type IV transporter system, and Plasmid  conjugal transfer TrbL/VirB6
1094556	CL:305	11	Aminoacyl-tRNA synthetase
1094556	CL:3056	5	mixed, incl. Type IV secretion system protein VirB11, and P-type conjugative transfer protein VirB9
1094556	CL:3067	5	mixed, incl. CagE, TrbE, VirB component of type IV transporter system, and Type IV secretion system, VirB5
1094556	CL:308	5	Aminoacyl-tRNA synthetase, class Ia, and Cysteine-tRNA ligase
1094556	CL:3083	20	mostly uncharacterized, incl. Peptidase S26, and Conjugal transfer, TrbL
1094556	CL:3085	12	mostly uncharacterized, incl. Peptidase S26, and Conjugal transfer, TrbL
1094556	CL:3088	5	mixed, incl. Conjugal transfer, TrbL, and Conjugal transfer, TrbD
1094556	CL:3113	5	mixed, incl. ParE toxin of type II toxin-antitoxin system, parDE, and Coiled coil
1094556	CL:3129	5	mixed, incl. H-NS histone family, and TrbC/VIRB2 family
1094556	CL:3145	11	mostly uncharacterized, incl. BON domain, and YegP-like superfamily
1094556	CL:3148	5	mixed, incl. Coiled coil
1094556	CL:3169	16	mixed, incl. Outer membrane autotransporter barrel, and Resolvase, N terminal domain
1094556	CL:3172	10	mixed, incl. Resolvase, N terminal domain, and HNH nucleases
1094556	CL:3175	5	Resolvase, N terminal domain, and Toxin-antitoxin system, YafQ-like toxin
1094556	CL:32	1598	mixed, incl. Membrane, and Cytoplasm
1094556	CL:3240	12	mixed, incl. Toxin HigB-like, and Uncharacterized protein HI1420
1094556	CL:3241	6	Toxin HigB-like, and Uncharacterized protein HI1420
1094556	CL:3253	5	mixed, incl. Toxin HigB-like, and Uncharacterized protein HI1420
1094556	CL:329	5	mixed, incl. Amidase, and GAD domain
1094556	CL:346	5	mixed, incl. RmuC family, and Peptide deformylase
1094556	CL:35	1593	mixed, incl. Membrane, and Cytoplasm
1094556	CL:355	28	mixed, incl. S-adenosyl-L-methionine, and Ribosome biogenesis
1094556	CL:357	18	mixed, incl. S-adenosyl-L-methionine, and Ribosome biogenesis
1094556	CL:359	6	mixed, incl. K homology domain-like, alpha/beta, and YlxR-like superfamily
1094556	CL:378	6	mixed, incl. TRAM domain, and PhoH-like protein
1094556	CL:38	1588	mixed, incl. Membrane, and Cytoplasm
1094556	CL:399	6	mixed, incl. Gcp-like domain, and Ribonuclease HII
1094556	CL:410	25	mixed, incl. Chaperone, and Thioredoxin domain
1094556	CL:415	13	Chaperone, and Lon protease
1094556	CL:418	5	Chaperone
1094556	CL:42	1583	mixed, incl. Membrane, and Cytoplasm
1094556	CL:43	1491	mixed, incl. Membrane, and Cytoplasm
1094556	CL:44	1361	mixed, incl. Membrane, and Cytoplasm
1094556	CL:445	5	mixed, incl. Thioredoxin, and Thioredoxin reductase
1094556	CL:459	20	mixed, incl. Rotamase, and S1 domain
1094556	CL:460	12	mixed, incl. S1 domain, and 3'-5' exonuclease
1094556	CL:463	5	S1 domain, and HRDC domain
1094556	CL:47	1356	mixed, incl. Membrane, and Cytoplasm
1094556	CL:48	1337	mixed, incl. Membrane, and Cytoplasm
1094556	CL:485	6	Cyclophilin-like domain superfamily, and RNA helicase, DEAD-box type, Q motif
1094556	CL:49	1322	mixed, incl. Membrane, and Cytoplasm
1094556	CL:499	53	mixed, incl. DNA damage, and DNA replication
1094556	CL:50	1290	mixed, incl. Membrane, and Cytoplasm
1094556	CL:501	45	DNA damage, and DNA replication
1094556	CL:504	34	DNA damage, and DNA replication
1094556	CL:506	16	DNA repair
1094556	CL:508	7	SOS response, and RecG wedge domain
1094556	CL:51	1285	mixed, incl. Membrane, and Cytoplasm
1094556	CL:52	1195	mixed, incl. Membrane, and Cytoplasm
1094556	CL:525	5	Excision nuclease, and BRCT domain
1094556	CL:53	1148	mixed, incl. Membrane, and Cytoplasm
1094556	CL:54	1142	mixed, incl. Membrane, and Cytoplasm
1094556	CL:540	16	DNA replication, and RNase H
1094556	CL:544	6	DNA-directed DNA polymerase, and DNA polymerase III, delta subunit
1094556	CL:55	1136	mixed, incl. Membrane, and Cytoplasm
1094556	CL:56	1082	mixed, incl. Membrane, and Cytoplasm
1094556	CL:560	6	Primosome, and DDH domain
1094556	CL:579	5	DNA topoisomerase, type IIA-like domain superfamily
1094556	CL:58	828	mixed, incl. Cytoplasm, and Membrane
1094556	CL:59	810	mixed, incl. Cytoplasm, and Membrane
1094556	CL:595	5	mixed, incl. AAA domain, and MnmE helical domain
1094556	CL:60	796	mixed, incl. Cytoplasm, and Membrane
1094556	CL:609	14	mixed, incl. S4 RNA-binding domain, and RNA 2-O ribose methyltransferase, substrate binding
1094556	CL:61	789	mixed, incl. Cytoplasm, and Membrane
1094556	CL:611	6	S4 RNA-binding domain, and RNA methyltransferase, RsmD
1094556	CL:62	762	mixed, incl. Cytoplasm, and Membrane
1094556	CL:627	5	mixed, incl. Rhomboid family, and Aspartyl protease
1094556	CL:63	739	mixed, incl. Cytoplasm, and Membrane
1094556	CL:637	6	mixed, incl. Pantothenate biosynthesis, and Dynamin family
1094556	CL:64	695	mixed, incl. Cytoplasm, and Membrane
1094556	CL:65	648	mixed, incl. Cytoplasm, and Transferase
1094556	CL:656	5	Band 7 domain, and GTPase HflX
1094556	CL:66	633	mixed, incl. Cytoplasm, and Transferase
1094556	CL:668	241	mixed, incl. Transferase, and Oxidoreductase
1094556	CL:669	221	mixed, incl. Transferase, and Oxidoreductase
1094556	CL:67	559	mixed, incl. Cytoplasm, and Transferase
1094556	CL:670	204	mixed, incl. Transferase, and Oxidoreductase
1094556	CL:671	137	mixed, incl. Amino-acid biosynthesis, and NAD(P)-binding domain superfamily
1094556	CL:672	100	mixed, incl. Oxidoreductase, and Fatty acid biosynthesis
1094556	CL:673	83	mixed, incl. Oxidoreductase, and Glycolysis
1094556	CL:674	59	mixed, incl. Glycolysis, and Tricarboxylic acid cycle
1094556	CL:676	51	mixed, incl. Glycolysis, and Tricarboxylic acid cycle
1094556	CL:677	33	mixed, incl. Tricarboxylic acid cycle, and Pyruvate
1094556	CL:678	21	mixed, incl. Tricarboxylic acid cycle, and Pyruvate
1094556	CL:68	541	mixed, incl. Cytoplasm, and Transferase
1094556	CL:680	7	mixed, incl. Malic enzyme, NAD-binding, and Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily
1094556	CL:69	300	mixed, incl. Cytoplasm, and Ribosomal protein
1094556	CL:70	293	mixed, incl. Cytoplasm, and Ribosomal protein
1094556	CL:701	8	Tricarboxylic acid cycle, and Succinate dehydrogenase/Fumarate reductase transmembrane subunit
1094556	CL:71	283	mixed, incl. Cytoplasm, and Ribosomal protein
1094556	CL:719	12	mixed, incl. ClpP/crotonase-like domain superfamily, and Biotin
1094556	CL:72	269	mixed, incl. Cytoplasm, and Ribosomal protein
1094556	CL:720	7	mixed, incl. Enoyl-CoA hydratase/isomerase, and MaoC like domain
1094556	CL:73	213	mixed, incl. RNA-binding, and Cytoplasm
1094556	CL:733	5	Biotin, and Carboxyl transferase domain
1094556	CL:74	193	mixed, incl. Ribonucleoprotein, and Protein biosynthesis
1094556	CL:742	18	mixed, incl. Glycolysis, and Carbohydrate metabolism
1094556	CL:744	10	Glycolysis, and Pentose shunt
1094556	CL:746	5	Glycolysis
1094556	CL:75	168	mixed, incl. Ribonucleoprotein, and Protein biosynthesis
1094556	CL:76	140	Ribonucleoprotein, and Protein biosynthesis
1094556	CL:77	135	Ribonucleoprotein, and Protein biosynthesis
1094556	CL:782	5	mixed, incl. KDPG/KHG aldolase, and Fumarylacetoacetase-like, C-terminal
1094556	CL:791	24	mixed, incl. One-carbon metabolism, and Glutamine synthetase/guanido kinase, catalytic domain
1094556	CL:792	18	mixed, incl. One-carbon metabolism, and Glutamine synthetase, catalytic domain
1094556	CL:793	10	mixed, incl. One-carbon metabolism, and Glycine cleavage H-protein
1094556	CL:795	5	mixed, incl. Glycine cleavage H-protein, and Serine hydroxymethyltransferase
1094556	CL:80	108	mixed, incl. Ribonucleoprotein, and ATP synthesis
1094556	CL:81	102	Ribonucleoprotein, and ATP synthesis
1094556	CL:812	8	mixed, incl. Glutamine synthetase, catalytic domain, and Asparaginase, N-terminal
1094556	CL:82	90	Ribonucleoprotein, and Transcription
1094556	CL:827	6	mixed, incl. Aminopeptidase, and Glutathione biosynthesis
1094556	CL:839	14	mixed, incl. Thiolase-like, and short chain dehydrogenase
1094556	CL:84	75	Ribonucleoprotein, and Translocation
1094556	CL:841	5	Thiolase-like, and Acyl transferase
1094556	CL:85	65	Ribosomal protein
1094556	CL:857	5	Beta-ketoacyl synthase, N-terminal, and Lipoyl synthase
1094556	CL:871	37	Amino-acid biosynthesis, and Orn/DAP/Arg decarboxylase 2, C-terminal
1094556	CL:872	19	mixed, incl. Aromatic amino acid biosynthesis, and Branched-chain amino acid biosynthesis
1094556	CL:875	6	Aromatic amino acid biosynthesis
1094556	CL:88	59	Ribosomal protein
1094556	CL:893	5	Branched-chain amino acid biosynthesis
1094556	CL:911	14	Lysine biosynthesis, and Arginine biosynthesis
1094556	CL:913	5	Diaminopimelate biosynthesis
1094556	CL:92	54	Ribosomal protein
1094556	CL:927	6	Arginine biosynthesis, and Argininosuccinate lyase
1094556	CL:944	67	mixed, incl. Purine biosynthesis, and Pyrimidine biosynthesis
1094556	CL:945	36	mixed, incl. Kinase, and Riboflavin biosynthesis
1094556	CL:946	27	mixed, incl. Kinase, and Riboflavin biosynthesis
1094556	CL:947	19	mixed, incl. Kinase, and dUTPase
1094556	CL:948	13	mixed, incl. Nucleotide metabolism, and Nucleotide biosynthesis
1094556	CL:950	5	mixed, incl. RelA/SpoT, and Guanylate kinase
1094556	CL:97	49	Ribosomal protein
1094556	CL:973	6	mixed, incl. TPR repeat, and LOG family
1094556	CL:98	40	Ribosomal protein
1094556	CL:986	5	Riboflavin biosynthesis, and FAD synthetase
