FSSP Fold Tree

The FSSP database

The FSSP database includes all protein chains from the Protein Data Bank which are longer than 30 residues. The chains are divided into a representative set and sequence homologs of structures in the representative set. Sequence homologs have more than 25 % sequence identity, and the representative set contains no pair of such sequence homologs. An all-against-all structure comparison is performed on the representative set. The resulting alignments are reported in the FSSP entries for individual chains. In addition, FSSP entries include the structure alignments of the search structure with its sequence homologs.

Reference

L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.

Availability

Under the terms of the GNU Library General Public License.

This table

is a fold classification of the representative set. A hierarchical clustering method is used to construct a tree based on the structural similarities from the all-against-all comparison. Family indices are constructed by cutting the tree at levels of 2, 4, 8, 16, 32 and 64 standard deviations above database average.

Related tables

PROTEIN INDEX is sorted according to PDB codes. See the accompanying README file for additional information.

Hyperlinks

Click on Family index for a summary of aligned pairs. Click on PDB-code for the complete FSSP entry. Click on alignment to view the structural alignments.
  Family index   PDB-code     Alignments  compound 
1.1.1.1.1.1          1ek8A         alignment  ribosome recycling factor (ribosome releasing factor, rrf)  
1.1.1.1.1.1          ______1dd5A   alignment  ribosome recycling factor                                   
1.1.1.2.1.1          ___1hx1B      alignment  heat shock cognate 71 kda fragment (hsc70) bag-family molecu
1.1.1.3.1.1          ___1quuA      alignment  human skeletal muscle alpha-actinin 2 fragment              
1.1.1.4.1.1          ___1cunA      alignment  alpha spectrin fragment Mutant                              
1.1.1.5.1.1          ___1fioA      alignment  sso1 protein fragment                                       
1.1.1.6.1.1          ___1dn1B      alignment  syntaxin binding protein 1 (nsec1) syntaxin 1a fragment     
1.1.1.7.1.1          ___1bg1A      alignment  stat3b biological_unit 18-mer desoxyoligonucleotide biologic
1.1.1.8.1.1          ___1fewA      alignment  second mitochondria-derived activator of caspases fragment  
1.1.2.1.1.1          __1hs7A       alignment  syntaxin vam3 fragment                                      
1.1.2.2.1.1          ___1e2aA      alignment  enzyme iia (enzyme iii, lactose-specific iia component) biol
1.1.3.1.1.1          __1qsdA       alignment  beta-tubulin binding post-chaperonin cofactor fragment      
1.1.4.1.1.1          __1i1iP       alignment  neurolysin                                                  
1.1.5.1.1.1          __1i4dA       alignment  arfaptin 2 fragment (partner of rac1) ras-related c3 botulin
1.1.5.2.1.1          ___1i49A      alignment  arfaptin 2 fragment                                         
1.1.5.3.1.1          ___1i4tB      alignment  arfaptin 2 fragment (partner of rac1) ras-related c3 botulin
1.1.5.4.1.1          ___1avoB      alignment  11s regulator (reg(alpha), pa28(alpha)) biological_unit     
1.1.6.1.1.1          __1qoyA       alignment  hemolysin e (cytolysin a, silent hemolysin a, hlye, clya, sh
1.1.7.1.1.1          __1fxkC       alignment  prefoldin prefoldin prefoldin                               
1.1.7.2.1.1          ___1fxkA      alignment  prefoldin prefoldin prefoldin                               
1.1.7.3.1.1          ___1qu7A      alignment  methyl-accepting chemotaxis protein i fragment              
1.1.8.1.1.1          __1a91        alignment  f1fo atpase subunit c (proteolipid, dccd-binding protein) bi
1.1.9.1.1.1          __1grj        alignment  Grea transcript cleavage factor from escherichia coli       
1.1.10.1.1.1         __1cxzB       alignment  his-tagged transforming protein rhoa(0-181) fragment Mutant 
1.1.11.1.1.1         __1fftD       alignment  1.1.12.1.1.1         __1nkd        alignment  rop (cole1 repressor of primer) Mutant biological_unit      
1.1.13.1.1.1         __1fpoA       alignment  chaperone protein hscb (hsc20) Mutant                       
1.1.14.1.1.1         __1be3C       alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
1.1.15.1.1.1         __1k34A       alignment  transmembrane glycoprotein gp41 fragment Mutant             
1.1.16.1.1.1         __1fzcA       alignment  fibrin fragment                                             
1.1.17.1.1.1         __1qbzC       alignment  siv gp41 ectodomain fragment Mutant                         
1.1.17.1.1.1         ______1envA   alignment  hiv-1 envelope protein chimera consisting of a fragment of g
1.1.18.1.1.1         __1bl8A       alignment  potassium channel protein Mutant                            
1.1.19.1.1.1         __1aep        alignment  Apolipophorin iii                                           
1.2.1.1.1.1          _1jb0L        alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
1.3.1.1.1.1          _1ffkS        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
1.3.2.1.1.1          __1ail        alignment  nonstructural protein ns1 fragment                          
1.4.1.1.1.1          _1ecrA        alignment  replication terminator protein (tus) DNA 16mer duplex replic
1.4.2.1.1.1          __1a32        alignment  ribosomal protein s15                                       
1.4.3.1.1.1          __1ec5A       alignment  four-helix bundle model                                     
1.4.4.1.1.1          __4hb1        alignment  dhp1                                                        
1.4.5.1.1.1          __1g4yB       alignment  calcium-activated potassium channel rsk2 fragment calmodulin
1.4.6.1.1.1          __6prcM       alignment  photosynthetic reaction center                              
1.4.6.1.2.1          ____6prcL     alignment  photosynthetic reaction center                              
1.4.6.2.1.1          ___1jb0A      alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
1.5.1.1.1.1          _1h6gA        alignment  alpha-1 catenin (cadherin-associated protein, alpha e-cateni
1.5.1.2.1.1          ___1dovA      alignment  alpha-catenin fragment                                      
1.5.1.3.1.1          ___1qkrA      alignment  vinculin fragment (tail domain)                             
1.5.1.4.1.1          ___1vls       alignment  aspartate receptor (tar) biological_unit                    
1.5.1.5.1.1          ___1nfn       alignment  apolipoprotein e3 fragment                                  
1.5.1.6.1.1          ___1fftC      alignment  ubiquinol oxidase ubiquinol oxidase ubiquinol oxidase ubiqui
1.5.1.6.2.1          ____1ocrC     alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
1.5.2.1.1.1          __1cpq        alignment  cytochrome c'                                               
1.5.2.1.1.1          ______1bbhA   alignment  Cytochrome c'                                               
1.5.2.2.1.1          ___2ccyA      alignment  Cytochrome c'                                               
1.5.2.3.1.1          ___256bA      alignment  Cytochrome b562 (oxidized)                                  
1.5.3.1.1.1          __2mhr        alignment  Myohemerythrin                                              
1.5.4.1.1.1          __2a0b        alignment  hpt domain                                                  
1.5.4.2.1.1          ___1qspA      alignment  ypd1 biological_unit                                        
1.5.5.1.1.1          __1i5nA       alignment  chemotaxis protein chea fragment                            
1.5.6.1.1.1          __1knyA       alignment  kanamycin nucleotidyltransferase (kntase) Mutant            
1.5.7.1.1.1          __1he1A       alignment  exoenzyme s fragment (exos) ras-related c3 botulinum toxin s
1.5.8.1.1.1          __1io1A       alignment  phase 1 flagellin fragment Mutant                           
1.5.9.1.1.1          __1ggqA       alignment  outer surface protein c fragment (ospc)                     
1.5.10.1.1.1         __1c17M       alignment  atp synthase subunit c atp synthase subunit a fragment      
1.5.11.1.1.1         __1nsgB       alignment  fk506-binding protein (fkbp-12) fkbp-rapamycin associated pr
1.5.12.1.1.1         __1furA       alignment  fumarase c (fumc) Mutant biological_unit                    
1.5.12.1.2.1         ____1auwA     alignment  delta 2 crystallin Mutant biological_unit                   
1.5.12.1.3.1         ____1f1oA     alignment  adenylosuccinate lyase (asl)                                
1.5.12.1.3.1         ______1c3cA   alignment  adenylosuccinate lyase                                      
1.5.12.2.1.1         ___1b8fA      alignment  histidine ammonia-lyase (hal, histidase) Mutant             
1.5.13.1.1.1         __1f88A       alignment  rhodopsin                                                   
1.5.13.2.1.1         ___1c3wA      alignment  bacteriorhodopsin (ground state wild type "br") biological_u
1.5.14.1.1.1         __2occA       alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
1.5.14.1.1.2         _____1ehkA    alignment  ba3-type cytochrome-c oxidase fragment ba3-type cytochrome-c
1.5.15.1.1.1         __1dtoA       alignment  regulatory protein e2 fragment                              
1.5.16.1.1.1         __1ek9A       alignment  outer membrane protein tolc                                 
1.5.17.1.1.1         __3mdeA       alignment  Medium chain acyl-coa dehydrogenase (mcad) complexed with oc
1.6.1.1.1.1          _2a3dA        alignment  de novo three-helix bundle                                  
1.6.2.1.1.1          __1br0A       alignment  syntaxin 1-a fragment Mutant                                
1.6.3.1.1.1          __1fjfT       alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
1.7.1.1.1.1          _1ps1A        alignment  pentalenene synthase biological_unit                        
1.7.1.1.2.1          ____1di1A     alignment  aristolochene synthase (sesquiterpene cyclase, as)          
1.7.1.1.3.1          ____5eat      alignment  5-epi-aristolochene synthase (5-epi-aristolochene cyclase) b
1.7.1.2.1.1          ___1uby       alignment  farnesyl diphosphate synthase (fps) Mutant biological_unit  
1.7.1.3.1.1          ___1ezfA      alignment  farnesyl-diphosphate farnesyltransferase fragment (squalene 
1.8.1.1.1.1          _2tct         alignment  tetracycline repressor (tet repressor, class d)             
1.9.1.1.1.1          _1qgtA        alignment  hbv capsid protein fragment (hbcag) biological_unit         
1.10.1.1.1.1         _1fumD        alignment  fumarate reductase flavoprotein subunit fragment (complex ii
1.10.2.1.1.1         __1qlaC       alignment  fumarate reductase flavoprotein subunit fumarate reductase i
1.11.1.1.1.1         _1fazA        alignment  phospholipase a2                                            
1.12.1.1.1.1         _1qojA        alignment  uvrb fragment                                               
1.12.2.1.1.1         __1p32A       alignment  mitochondrial matrix protein, sf2p32 Mutant                 
1.13.1.1.1.1         _1joyA        alignment  envz_ecoli fragment                                         
1.14.1.1.1.1         _1e52A        alignment  excinuclease abc subunit  fragment                          
1.14.2.1.1.1         __1h6oA       alignment  telomeric repeat binding factor 1 (trf1) fragment           
1.14.3.1.1.1         __1e79H       alignment  atp synthase alpha chain heart isoform (bovine mitochondrial
1.14.3.1.1.1         ______1aqt    alignment  atp synthase fragment Mutant                                
1.15.1.1.1.1         _2occH        alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
1.16.1.1.1.1         _1dvkA        alignment  prp18                                                       
1.16.2.1.1.1         __1dkzA       alignment  substrate binding domain of dnak biological_unit substrate p
1.17.1.1.1.1         _2vsgA        alignment  variant surface glycoprotein iltat 1.24 fragment (vsg)      
1.17.1.1.2.1         ____1vsgA     alignment  Variant surface glycoprotein (n-terminal domain)            
1.18.1.1.1.1         _1i1rB        alignment  interleukin-6 receptor beta chain fragment (gp130) viral il-
1.18.1.1.2.1         ____1alu      alignment  interleukin-6                                               
1.18.1.2.1.1         ___1bgc       alignment  Granulocyte colony-stimulating factor (rbg-csf)             
1.18.1.3.1.1         ___1cnt3      alignment  ciliary neurotrophic factor (cntf) Mutant                   
1.18.1.4.1.1         ___1evsA      alignment  oncostatin m                                                
1.18.1.5.1.1         ___1lki       alignment  Leukemia inhibitory factor (lif)                            
1.18.1.6.1.1         ___1huw       alignment  Human growth hormone mutant with phe 10 replaced by ala, met
1.18.1.6.2.1         ____1f6fA     alignment  placental lactogen prolactin receptor fragment              
1.18.1.7.1.1         ___1ax8       alignment  obesity protein (leptin) Mutant biological_unit             
1.18.1.8.1.1         ___1b5l       alignment  interferon tau                                              
1.18.1.9.1.1         ___1ifa       alignment  Interferon beta (murine)                                    
1.18.1.10.1.1        ___1eerA      alignment  erythropoietin Mutant erythropoietin receptor fragment (epob
1.18.2.1.1.1         __1f45B       alignment  interleukin-12 beta chain fragment Mutant interleukin-12 alp
1.18.3.1.1.1         __3inkC       alignment  Interleukin 2 mutant with cys 125 replaced by ala (c125a)   
1.18.3.2.1.1         ___1rcb       alignment  Interleukin 4                                               
1.18.4.1.1.1         __1exzA       alignment  stem cell factor fragment (scf)                             
1.18.4.2.1.1         ___1eteA      alignment  flt3 ligand fragment                                        
1.18.4.3.1.1         ___1hmcB      alignment  Human macrophage colony stimulating factor (alpha form, solu
1.18.5.1.1.1         __2gmfA       alignment  granulocyte-macrophage colony-stimulating factor            
1.18.6.1.1.1         __1rh2F       alignment  interferon-alpha 2b biological_unit                         
1.18.7.1.1.1         __1jli        alignment  interleukin 3 (multi-csf) Mutant                            
1.18.8.1.1.1         __1ga3A       alignment  interleukin-13 fragment (il-13)                             
1.19.1.1.1.1         _1xsm         alignment  ribonucleotide reductase r2 (r2) biological_unit            
1.19.1.1.2.1         ____1xikA     alignment  protein r2 of ribonucleotide reductase fragment (rnr r2)    
1.19.1.1.3.1         ____1r2fA     alignment  ribonucleotide reductase r2                                 
1.19.1.1.4.1         ____1mhyD     alignment  methane monooxygenase hydroxylase biological_unit           
1.19.1.1.5.1         ____1mtyB     alignment  methane monooxygenase hydroxylase biological_unit           
1.19.1.2.1.1         ___1afrA      alignment  delta9 stearoyl-acyl carrier protein desaturase (fatty acid 
1.19.1.3.1.1         ___1jk0A      alignment  ribonucleoside-diphosphate reductase small chain 1 (rnr y2) 
1.19.1.4.1.1         ___2fha       alignment  ferritin Mutant biological_unit                             
1.19.1.4.1.1         ______1eumA   alignment  ferritin 1                                                  
1.19.1.4.1.1         ______1bcfA   alignment  Bacterioferritin (cytochrome b1)                            
1.19.1.4.2.1         ____1ryt      alignment  rubrerythrin biological_unit                                
1.19.1.5.1.1         ___1dpsA      alignment  dps (pexb) Mutant biological_unit                           
1.19.1.5.1.1         ______1qghA   alignment  non-heme iron-containing ferritin                           
1.19.2.1.1.1         __1j77A       alignment  hemo (heme oxygenase)                                       
1.19.2.1.2.1         ____1qq8A     alignment  heme oxygenase fragment                                     
1.20.1.1.1.1         _2ilk         alignment  interleukin-10                                              
1.20.2.1.1.1         __1hulA       alignment  interleukin-5                                               
1.20.3.1.1.1         __1d9cA       alignment  interferon-gamma                                            
1.21.1.1.1.1         _1foeA        alignment  t-lymphoma invasion and metastasis inducing protein 1 fragme
1.21.1.1.2.1         ____1f5xA     alignment  rho-gef vav fragment                                        
1.21.1.2.1.1         ___1by1A      alignment  pix fragment                                                
1.22.1.1.1.1         _1h2rL        alignment  periplasmic [nife] hydrogenase small subunit (hydrogen perip
1.23.1.1.1.1         _1b91A        alignment  histone acetyltransferase fragment                          
1.23.1.2.1.1         ___1eqfA      alignment  RNA polymerase ii transcription initiation factor fragment (
1.23.2.1.1.1         __1fiy        alignment  phosphoenolpyruvate carboxylase (pepc) biological_unit allos
2.1.1.1.1.1          1lre          alignment  receptor-associated protein fragment (rap, low density lipop
2.1.2.1.1.1          __1bj5        alignment  human serum albumin biological_unit                         
2.2.1.1.1.1          _1ytfB        alignment  yeast tata-box binding protein fragment (ytbp) yeast transcr
2.2.2.1.1.1          __1h6qA       alignment  translationally controlled tumor protein (tctp, p23fyp)     
2.3.1.1.1.1          _1bgf         alignment  stat-4 fragment                                             
2.4.1.1.1.1          _1fafA        alignment  large t antigen fragment                                    
3.1.1.1.1.1          1qdbA         alignment  cytochrome c nitrite reductase                              
3.1.1.2.1.1          ___1fgjA      alignment  hydroxylamine oxidoreductase                                
4.1.1.1.1.1          1g6uA         alignment  domain swapped dimer                                        
4.2.1.1.1.1          _1fumC        alignment  fumarate reductase flavoprotein subunit fragment (complex ii
4.3.1.1.1.1          _1qcrH        alignment  ubiquinol cytochrome c oxidoreductase (cytochrome bc1, qcr) 
4.3.2.1.1.1          __1be3H       alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
5.1.1.1.1.1          1avmA         alignment  superoxide dismutase (sod) biological_unit                  
6.1.1.1.1.1          1rmvA         alignment  ribgrass mosaic virus coat protein ribgrass mosaic virus RNA
7.1.1.1.1.1          1pprM         alignment  peridinin-chlorophyll protein (pcp)                         
8.1.1.1.1.1          3bct          alignment  beta-catenin fragment                                       
8.1.1.1.1.1          ______1bk5A   alignment  karyopherin alpha fragment (importin alpha, srp1p)          
8.1.1.1.2.1          ____1ee4A     alignment  karyopherin alpha fragment (serine-rich RNA polymerase i sup
8.1.1.1.3.1          ____1ho8A     alignment  vacuolar atp synthase subunit h (vma13, v-atpase h subunit, 
8.1.1.2.1.1          ___1qbkB      alignment  karyopherin beta2 fragment ran fragment                     
8.1.1.2.2.1          ____1qgrA     alignment  importin beta subunit (karyopherin beta-1, nuclear factor p9
8.1.1.3.1.1          ___1b3uA      alignment  protein phosphatase pp2a fragment                           
8.1.1.4.1.1          ___1ib2A      alignment  pumilio 1 fragment                                          
8.1.1.5.1.1          ___1lrv       alignment  leucine-rich repeat variant (lrv) biological_unit           
8.1.2.1.1.1          __1eduA       alignment  eh domain binding protein epsin fragment                    
8.1.2.2.1.1          ___1hg5A      alignment  clathrin assembly protein short form fragment (calm-n, ap180
8.1.2.3.1.1          ___1dvpA      alignment  hepatocyte growth factor-regulated tyrosine kinase substrate
8.1.3.1.1.1          __1bkdS       alignment  h-ras fragment (p21) son of sevenless-1 fragment (sos)      
8.1.4.1.1.1          __1ft1A       alignment  protein farnesyltransferase                                 
8.1.5.1.1.1          __1h6kA       alignment  cbp80 fragment (ncbp 80 kda subunit, cbp80) fragment Mutant 
8.1.5.2.1.1          ___1hu3A      alignment  eif4gii fragment (eukaryotic initiation factor 4gii)        
8.2.1.1.1.1          _1mtyG        alignment  methane monooxygenase hydroxylase biological_unit           
8.2.2.1.1.1          __2occE       alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
8.3.1.1.1.1          _1fchA        alignment  peroxisomal targeting signal 1 receptor fragment (peroxismor
8.3.1.1.2.1          ____1a17      alignment  serineTHREONINE PROTEIN PHOSPHATASE 5 fragment (tetratricope
8.3.1.2.1.1          ___1e96B      alignment  ras-related c3 botulinum toxin substrate 1 (rac1) Mutant neu
8.3.1.3.1.1          ___1hxiA      alignment  peroxisome targeting signal 1 receptor pex5 fragment (pex5) 
8.3.1.4.1.1          ___1qqeA      alignment  vesicular transport protein sec17 Mutant biological_unit    
8.3.1.5.1.1          ___1qjaA      alignment  14-3-3 protein zeta biological_unit phosphopeptide          
8.3.2.1.1.1          __1om2A       alignment  mitochondrial import receptor subunit tom20 fragment mitocho
8.3.3.1.1.1          __1b89A       alignment  clathrin heavy chain fragment                               
8.4.1.1.1.1          _1fce         alignment  cellulase celf fragment                                     
8.4.1.1.2.1          ____1cem      alignment  cellulase cela (1,4-beta-d-glucan-glucanohydrolase) fragment
8.4.1.1.3.1          ____1fp3A     alignment  n-acyl-d-glucosamine 2-epimerase                            
8.4.1.1.4.1          ____1ayx      alignment  glucoamylase                                                
8.4.1.2.1.1          ___1tf4A      alignment  t. fusca endoEXO-CELLULASE E4 CATALYTIC DOMAIN and cellulose
8.4.1.2.1.2          _____1clc     alignment  endoglucanase celd (1,4-beta-d-glucan-glucanohydrolase, cell
8.4.1.3.1.1          ___1ft1B      alignment  protein farnesyltransferase                                 
8.4.1.3.1.2          _____1dceB    alignment  rab geranylgeranyltransferase alpha subunit rab geranylgeran
8.4.1.3.2.1          ____2sqcA     alignment  squalene-hopene cyclase Mutant biological_unit              
8.4.1.4.1.1          ___1c3d       alignment  c3d Mutant biological_unit                                  
8.4.1.5.1.1          ___1hcuA      alignment  alpha-1,2-mannosidase (1,2-a-d-mannosidase)                 
8.4.1.5.1.2          _____1dl2A    alignment  class i alpha-1,2-mannosidase fragment                      
8.4.2.1.1.1          __1eguA       alignment  hyaluronate lyase                                           
8.4.2.1.1.2          _____1cb8A    alignment  chondroitinase ac                                           
8.4.2.2.1.1          ___1qazA      alignment  alginate lyase a1-iii biological_unit                       
9.1.1.1.1.1          1dk5A         alignment  annexin 24(ca32)                                            
9.1.1.1.1.1          ______1avc    alignment  annexin vi (p68, protein iii, 67-kda-calcimedin, lipocortin 
9.1.1.2.1.1          ___1bo9A      alignment  annexin i fragment (lipocortin i, calpactin ii, chromobindin
9.2.1.1.1.1          _1rzl         alignment  nonspecific lipid transfer protein fragment                 
9.3.1.1.1.1          _1bea         alignment  bifunctional amylaseSERINE PROTEASE INHIBITOR biological_uni
9.3.2.1.1.1          __1hyp        alignment  Hydrophobic protein from soybean                            
10.1.1.1.1.1         1nf1A         alignment  neurofibromin fragment (nf1-333)                            
10.1.1.1.2.1         ____1wer      alignment  p120gap fragment (gap-334, gapette)                         
10.2.1.1.1.1         _1abv         alignment  delta subunit of the f1f0-atp synthase fragment             
10.3.1.1.1.1         _1pbv         alignment  arno fragment (arf nucleotide-binding site opener)          
10.4.1.1.1.1         _1f7cA        alignment  rhogap protein fragment                                     
10.4.1.1.2.1         ____1tx4A     alignment  p50-rhogap (gtpase-activating protein rhogap) transforming p
10.4.1.1.3.1         ____1pbwA     alignment  phosphatidylinositol 3-kinase fragment (rhogap domain)      
11.1.1.1.1.1         1f16A         alignment  apoptosis regulator bax, membrane isoform alpha             
11.1.1.2.1.1         ___1maz       alignment  bcl-xl (apoptosis regulator bcl-x)                          
11.1.2.1.1.1         __2bidA       alignment  bid                                                         
11.1.3.1.1.1         __1ddbA       alignment  bid biological_unit                                         
12.1.1.1.1.1         1dioG         alignment  diol dehydratase diol dehydratase diol dehydratase          
12.2.1.1.1.1         _1aa7A        alignment  influenza virus matrix protein biological_unit              
12.3.1.1.1.1         _1g1eB        alignment  mad1 protein fragment (max dimerization protein) sin3a fragm
13.1.1.1.1.1         1ithA         alignment  Hemoglobin (cyanomet)                                       
13.1.1.1.1.1         ______1flp    alignment  Hemoglobin i (monomeric) (ferric)                           
13.1.1.1.1.1         ______2fal    alignment  Myoglobin (ferric) complex with cyanide                     
13.1.1.1.1.1         ______1ash    alignment  Hemoglobin (domain one)                                     
13.1.1.1.1.1         ______3sdhA   alignment  Hemoglobin i (homodimer) (carbon-monoxy)                    
13.1.1.1.1.1         ______1h97A   alignment  globin-3 (myoglobin, hemoglobin)                            
13.1.1.2.1.1         ___1cg5B      alignment  hemoglobin hemoglobin                                       
13.1.1.2.2.1         ____1abwA     alignment  hemoglobin-based blood substitute Mutant peptide            
13.1.1.2.3.1         ____1a6m      alignment  myoglobin biological_unit                                   
13.1.1.2.3.1         ______2hbg    alignment  Hemoglobin (deoxy)                                          
13.1.1.3.1.1         ___1hlb       alignment  Hemoglobin (sea cucumber)                                   
13.1.1.4.1.1         ___1ewaA      alignment  dehaloperoxidase                                            
13.1.1.5.1.1         ___2vhbA      alignment  hemoglobin (soluble cytochrome o) biological_unit           
13.1.1.5.2.1         ____1cqxA     alignment  flavohemoprotein                                            
13.1.1.6.1.1         ___2gdm       alignment  leghemoglobin (oxy)                                         
13.1.1.7.1.1         ___1dlyA      alignment  hemoglobin                                                  
13.1.2.1.1.1         __1qgwC       alignment  cryptophytan phycoerythrin (alpha-1 chain) biological_unit c
13.1.2.1.2.1         ____1cpcA     alignment  C-phycocyanin                                               
13.1.3.1.1.1         __1a87        alignment  colicin n fragment                                          
13.1.3.2.1.1         ___1cii       alignment  colicin ia biological_unit                                  
13.2.1.1.1.1         _5csmA        alignment  chorismate mutase (chorismate pyruvate mutase) Mutant biolog
13.2.2.1.1.1         __1ecmA       alignment  endo-oxabicyclic transition state analogue                  
14.1.1.1.1.1         1anv          alignment  adenovirus single-stranded DNA-binding protein fragment     
15.1.1.1.1.1         1mroB         alignment  methyl-coenzyme m reductase biological_unit                 
15.1.1.1.2.1         ____1mroA     alignment  methyl-coenzyme m reductase biological_unit                 
15.2.1.1.1.1         _1f0jA        alignment  phosphodiesterase 4b fragment (pde4b) Mutant                
16.1.1.1.1.1         1b10A         alignment  prion protein fragment (sha rprp90-231)                     
16.1.2.1.1.1         __1i17A       alignment  prion-like protein fragment (mouse doppel)                  
17.1.1.1.1.1         2end          alignment  Endonuclease v                                              
18.1.1.1.1.1         1lox          alignment  15-lipoxygenase (15lox) biological_unit                     
18.1.1.1.1.2         _____1yge     alignment  lipoxygenase-1 (l-1)                                        
18.1.1.2.1.1         ___1gpl       alignment  rp2 lipase (related protein 2 lipase) Mutant                
18.2.1.1.1.1         _1ca1         alignment  alpha-toxin (phospholipase c) biological_unit               
18.2.1.1.2.1         ____1ah7      alignment  phospholipase c (phosphatidylcholine-hydrolyzing phospholipa
18.2.1.2.1.1         ___1ak0       alignment  p1 nuclease                                                 
19.1.1.1.1.1         16vpA         alignment  vp16, vmw65, atif fragment                                  
20.1.1.1.1.1         1csh          alignment  Citrate synthase complexed with oxaloacetate and amidocarbox
20.1.1.1.1.2         _____1aj8A    alignment  citrate synthase biological_unit                            
20.2.1.1.1.1         _1ay7B        alignment  guanyl-specific ribonuclease sa barstar                     
21.1.1.1.1.1         1htjF         alignment  kiaa0380 fragment Mutant                                    
21.1.1.2.1.1         ___1agrE      alignment  guanine nucleotide-binding protein g(i) fragment (gi-alpha-1
22.1.1.1.1.1         1id0A         alignment  phoq histidine kinase fragment (sensor protein phoq)        
22.1.1.1.2.1         ____1gkxA     alignment  [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase (
22.1.1.2.1.1         ___1b3qA      alignment  chemotaxis protein chea fragment Mutant                     
22.1.1.3.1.1         ___1bxdA      alignment  osmolarity sensor protein (envz) fragment (envz(290-450))   
22.1.2.1.1.1         __1ixmA       alignment  sporulation response regulatory protein (spo0b)             
22.2.1.1.1.1         _1b63A        alignment  mutl fragment                                               
22.2.1.2.1.1         ___1aj6       alignment  gyrase fragment Mutant biological_unit                      
22.2.1.3.1.1         ___1yer       alignment  heat shock protein 90 fragment (hsp90)                      
23.1.1.1.1.1         1fc2C         alignment  Immunoglobulin fc and fragment b of protein a complex       
23.2.1.1.1.1         _2gp8A        alignment  scaffolding protein fragment                                
24.1.1.1.1.1         1r1bA         alignment  trna synthetase fragment (trna ligase)                      
24.2.1.1.1.1         _1hp8         alignment  hu-p8 Mutant                                                
25.1.1.1.1.1         1cei          alignment  colicin e7 immunity protein (imme7)                         
25.2.1.1.1.1         _1g8qA        alignment  cd81 antigen, extracellular domain fragment (cd81, target of
26.1.1.1.1.1         1vin          alignment  cyclin a Mutant                                             
26.1.1.1.2.1         ____1bu2A     alignment  cyclin homolog                                              
26.1.1.1.3.1         ____1f5qB     alignment  cyclin dependent kinase 2 gamma herpesvirus cyclin          
26.1.1.1.4.1         ____1jkw      alignment  cyclin h (rcyclin h (recombinant))                          
26.1.1.2.1.1         ___1tfb       alignment  tfiib fragment Mutant                                       
26.1.1.3.1.1         ___1aisB      alignment  tata-binding protein fragment (tbp) biological_unit transcri
26.1.1.4.1.1         ___1guxB      alignment  retinoblastoma protein fragment oncoprotein                 
26.1.2.1.1.1         __1guxA       alignment  retinoblastoma protein fragment oncoprotein                 
26.2.1.1.1.1         _1sig         alignment  RNA polymerase primary sigma factor fragment (sigma70) biolo
26.2.2.1.1.1         __1i2tA       alignment  hyd protein fragment                                        
26.3.1.1.1.1         _1fkmA        alignment  gyp1p fragment (orf yor070c)                                
26.4.1.1.1.1         _1h99A        alignment  transcription antiterminator lict fragment Mutant (lict-anti
26.4.2.1.1.1         __1fouA       alignment  upper collar protein (gp 10, connector protein, late protein
26.5.1.1.1.1         _1lis         alignment  Lysin                                                       
26.5.1.2.1.1         ___1gakA      alignment  fertilization protein (sp18)                                
27.1.1.1.1.1         1eijA         alignment  hypothetical protein mth1615                                
27.1.2.1.1.1         __1ffkM       alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
27.2.1.1.1.1         _1gab         alignment  protein pab fragment (ga module)                            
28.1.1.1.1.1         1eo0A         alignment  transcription elongation factor s-ii fragment               
28.2.1.1.1.1         _1b4cA        alignment  s-100 protein, beta chain (s100b, s100beta)                 
29.1.1.1.1.1         2lbd          alignment  retinoic acid receptor gamma fragment (e domain) biological_
29.1.1.1.2.1         ____1db1A     alignment  vitamin d nuclear receptor fragment (vdr)                   
29.1.1.1.3.1         ____2prgA     alignment  peroxisome proliferator activated receptor gamma fragment (e
29.1.1.1.4.1         ____3erdA     alignment  estrogen receptor alpha fragment (oestrogen receptor, er lbd
29.1.1.1.5.1         ____1a28A     alignment  progesterone receptor fragment                              
29.1.1.1.6.1         ____1lbd      alignment  retinoid x receptor fragment (rxr_lbd)                      
29.2.1.1.1.1         _1eyvA        alignment  n-utilizing substance protein b homolog (nusb protein)      
30.1.1.1.1.1         1d2tA         alignment  acid phosphatase fragment                                   
30.1.1.2.1.1         ___1qhbA      alignment  haloperoxidase                                              
30.1.1.3.1.1         ___1vns       alignment  vanadium chloroperoxidase biological_unit                   
31.1.1.1.1.1         1enwA         alignment  transcription elongation factor s-ii fragment               
32.1.1.1.1.1         1tfe          alignment  elongation factor ts fragment                               
32.1.1.2.1.1         ___1efuB      alignment  elongation factor tu (elongation factor for transfer, heat u
32.2.1.1.1.1         _1kdxA        alignment  cbp fragment (creb-binding protein) creb fragment (camp-resp
32.3.1.1.1.1         _1rss         alignment  ribosomal protein s7 Mutant                                 
32.4.1.1.1.1         _1dv0A        alignment  DNA repair protein hhr23a fragment                          
32.4.2.1.1.1         __1aua        alignment  phosphatidylinositol transfer protein sec14p biological_unit
32.5.1.1.1.1         _1hjp         alignment  ruva biological_unit                                        
33.1.1.1.1.1         1fjfM         alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
34.1.1.1.1.1         1ubpA         alignment  urease (urea aminohydrolase) urease (urea aminohydrolase) ur
34.2.1.1.1.1         _1cmiA        alignment  protein inhibitor of neuronal nitric oxide synthase (pinLC8)
35.1.1.1.1.1         4crxA         alignment  cre recombinase Mutant biological_unit DNA (35 nucleotide cr
35.1.1.2.1.1         ___1ae9A      alignment  lambda integrase fragment Mutant                            
35.1.1.3.1.1         ___1a0p       alignment  site-specific recombinase xerd                              
35.1.1.4.1.1         ___1aihA      alignment  hp1 integrase fragment                                      
35.1.1.5.1.1         ___1floA      alignment  flp recombinase fragment (site-specific recombinase, protein
35.1.2.1.1.1         __1a41        alignment  topoisomerase i fragment                                    
35.1.2.2.1.1         ___1a36A      alignment  topoisomerase i fragment Mutant biological_unit DNA         
36.1.1.1.1.1         1msk          alignment  cobalamin-dependent methionine synthase fragment            
36.1.2.1.1.1         __1zymA       alignment  enzyme i fragment                                           
36.2.1.1.1.1         _1qb2A        alignment  human signal recognition particle 54 kd protein fragment (sr
36.2.2.1.1.1         __1dulA       alignment  signal recognition particle protein (fifty-four homolog) fra
37.1.1.1.1.1         1bax          alignment  m-pmv matrix protein (m-pmv ma)                             
37.2.1.1.1.1         _1a6s         alignment  gag polyprotein fragment Mutant                             
37.3.1.1.1.1         _1hiwA        alignment  hiv-1 matrix protein fragment (hiv-1 ma, p17, matrix protein
38.1.1.1.1.1         1jvr          alignment  human t-cell leukemia virus type ii matrix protein (htlv-ii 
39.1.1.1.1.1         1gd8A         alignment  50s ribosomal protein l17                                   
39.2.1.1.1.1         _1f81A        alignment  creb-binding protein fragment                               
40.1.1.1.1.1         1dvoA         alignment  fertility inhibition protein o (fino) Mutant                
41.1.1.1.1.1         1derA         alignment  groel Mutant                                                
41.1.1.1.2.1         ____1a6dA     alignment  thermosome biological_unit                                  
41.1.2.1.1.1         __1amj        alignment  Aconitase complexed with sulfate and hydroxide              
41.2.1.1.1.1         _1eo1A        alignment  hypothetical protein mth1175                                
42.1.1.1.1.1         1byrA         alignment  endonuclease biological_unit                                
42.1.1.2.1.1         ___1f0iA      alignment  phospholipase d                                             
42.2.1.1.1.1         _1fzrA        alignment  endonuclease i fragment (endodeoxyribonuclease i) Mutant    
43.1.1.1.1.1         1c4zA         alignment  ubiquitin-protein ligase e3a fragment (e6ap) ubiquitin conju
43.2.1.1.1.1         _1fqyA        alignment  aquaporin-1 (aqp1)                                          
44.1.1.1.1.1         1fznD         alignment  staphylococcal accessory regulator a (sara) Mutant          
44.2.1.1.1.1         _1mslA        alignment  mechanosensitive ion channel (mscl) biological_unit         
45.1.1.1.1.1         1jb0K         alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
46.1.1.1.1.1         1jb0F         alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
46.2.1.1.1.1         _1f02T        alignment  intimin fragment translocated intimin receptor fragment (tir
46.3.1.1.1.1         _1g8eA        alignment  flagellar transcriptional activator flhd                    
47.1.1.1.1.1         1poa          alignment  Phospholipase a2                                            
47.2.1.1.1.1         _1poc         alignment  Phospholipase a2 complex with the transition-state analogue 
48.1.1.1.1.1         1thx          alignment  thioredoxin (thioredoxin 2)                                 
48.1.1.1.1.1         ______1erv    alignment  thioredoxin Mutant                                          
48.1.1.2.1.1         ___1qgvA      alignment  spliceosomal protein u5-15kd fragment                       
48.1.1.3.1.1         ___1b9yC      alignment  transducin fragment (gt beta) transducin fragment (gt gamma)
48.1.1.4.1.1         ___1bjx       alignment  protein disulfide isomerase fragment                        
48.1.1.5.1.1         ___1a8y       alignment  calsequestrin                                               
48.1.2.1.1.1         __1g7eA       alignment  endoplasmic reticulum protein erp29 fragment                
48.1.3.1.1.1         __1qq2A       alignment  thioredoxin peroxidase 2 (heme-binding protein 23 kd, hbp23)
48.1.3.1.2.1         ____1prxA     alignment  horf6 Mutant                                                
48.1.3.1.3.1         ____1hd2A     alignment  peroxiredoxin 5 residues 54-214 (prdx5, prxv, aoeb166, pmp20
48.1.3.2.1.1         ___1jfuA      alignment  thiol:disulfide interchange protein tlpa fragment           
48.1.3.3.1.1         ___1gp1A      alignment  Glutathione peroxidase                                      
48.1.3.4.1.1         ___1ewxA      alignment  tryparedoxin i                                              
48.1.4.1.1.1         __1a8l        alignment  protein disulfide oxidoreductase                            
48.1.5.1.1.1         __1fvkA       alignment  disulfide bond formation protein (dsba)                     
48.1.5.2.1.1         ___1eejA      alignment  thiol:disulfide interchange protein (protein disulfide-isome
48.2.1.1.1.1         _1fo5A        alignment  thioredoxin (mj0307 protein disulfide oxidoreductase)       
48.3.1.1.1.1         _1f37A        alignment  ferredoxin [2fe-2s]                                         
48.4.1.1.1.1         _1hqoA        alignment  ure2 protein fragment                                       
48.4.1.1.2.1         ____1gnwA     alignment  glutathione s-transferase biological_unit                   
48.4.1.1.3.1         ____1a0fA     alignment  glutathione s-transferase fragment (gst, glutathione transfe
48.4.1.1.4.1         ____1eemA     alignment  glutathione-s-transferase                                   
48.4.1.1.5.1         ____1ljrA     alignment  glutathione s-transferase (hgst t2-2) biological_unit       
48.4.1.1.6.1         ____1e6bA     alignment  glutathione s-transferase                                   
48.4.1.1.7.1         ____1pgtA     alignment  glutathione s-transferase (gst, hgstp1-1[v104]) Mutant biolo
48.4.1.1.8.1         ____1pd21     alignment  hematopoietic prostagladin d synthase (hpgds, spleen type pg
48.4.1.1.9.1         ____1b8xA     alignment  aml-1b fragment                                             
48.4.1.2.1.1         ___1g7oA      alignment  glutaredoxin 2 (grx2)                                       
48.4.2.1.1.1         __1h75A       alignment  glutaredoxin-like protein nrdh                              
48.4.2.2.1.1         ___1aba       alignment  Glutaredoxin mutant with val 15 replaced by gly and tyr 16 r
48.4.2.3.1.1         ___1kte       alignment  thioltransferase                                            
48.4.3.1.1.1         __1qfnA       alignment  glutaredoxin 1 (grx 1) Mutant cys 11 a and cys 148 b;   ribo
49.1.1.1.1.1         1hywA         alignment  head-to-tail joining protein w (gpw)                        
50.1.1.1.1.1         1cpt          alignment  Cytochrome p450-terp                                        
50.1.1.1.1.2         _____1rom     alignment  cytochrome p450 (cytochrome p450nor, nitric oxide reductase)
50.1.1.1.1.3         _____1phd     alignment  Cytochrome p450-cam (camphor 5-monoxygenase) complex with 2-
50.1.1.1.1.4         _____1f4tA    alignment  cytochrome p450 119 (cyp119)                                
50.1.1.1.2.1         ____1dt6A     alignment  cytochrome p450 2c5 fragment (progesterone 21-hydroxylase, c
50.1.1.1.2.2         _____1bu7A    alignment  cytochrome p450 fragment (fatty acid hydroxylase)           
50.1.1.1.3.1         ____1ea1A     alignment  cytochrome p450 51-like rv0764c (cyp51, 14alpha-sterol demet
51.1.1.1.1.1         1c20A         alignment  dead ringer protein fragment                                
51.1.2.1.1.1         __1ig6A       alignment  modulator recognition factor 2 fragment (mrf-2)             
52.1.1.1.1.1         1kjs          alignment  c5a (complement c5a)                                        
52.2.1.1.1.1         _1d8bA        alignment  sgs1 recq helicase fragment                                 
52.3.1.1.1.1         _1sknP        alignment  transcription factor skn-1 fragment DNA                     
53.1.1.1.1.1         1bqz          alignment  dnaj fragment (hsp40) biological_unit                       
54.1.1.1.1.1         1theB         alignment  cathepsin b Mutant                                          
54.1.1.1.2.1         ____1cs8A     alignment  human procathepsin l Mutant                                 
54.1.1.2.1.1         ___3gcb       alignment  gal6 (ybh, yeast bleomycin hydrolase) Mutant biological_unit
54.1.1.3.1.1         ___1cv8       alignment  staphopain (thiol proteinase from staphylococcus aureus v-8)
54.1.1.4.1.1         ___1dkiA      alignment  pyrogenic exotoxin b zymogen fragment Mutant                
54.1.2.1.1.1         __1qmyA       alignment  protease (leader protease) Mutant                           
55.1.1.1.1.1         1uch          alignment  ubiquitin c-terminal hydrolase uch-l3 (uch-l3,Dub) biologica
56.1.1.1.1.1         1e2tA         alignment  n-hydroxyarylamine o-acetyltransferase (nat)                
57.1.1.1.1.1         1icfB         alignment  cathepsin l cathepsin l invariant chain fragment (ii fragmen
58.1.1.1.1.1         1dj7A         alignment  ferredoxin thioredoxin reductase ferredoxin thioredoxin redu
59.1.1.1.1.1         1fe6A         alignment  tetrabrachion fragment                                      
59.1.1.1.1.1         ______1a02F   alignment  nfat fragment (nf-at) biological_unit c-fos Mutant c-jun Mut
59.1.1.1.1.1         ______1a02J   alignment  nfat fragment (nf-at) biological_unit c-fos Mutant c-jun Mut
59.1.1.1.1.1         ______1fe6C   alignment  tetrabrachion fragment                                      
59.1.1.1.1.1         ______1debA   alignment  adenomatous polyposis coli protein fragment (apc protein)   
59.1.1.1.1.1         ______1e7tA   alignment  general control protein gcn4, vimentin fragment             
59.1.1.1.1.1         ______2dgcA   alignment  gcn4 fragment atfCREB SITE DNA                              
59.1.1.1.1.1         ______1eq7A   alignment  outer membrane lipoprotein fragment                         
59.1.1.1.1.1         ______1ci6A   alignment  transcription factor atf-4 transcription factor cEBP BETA   
59.1.1.1.1.1         ______1ifi    alignment  Inovirus (filamentous bacteriophage) strain fd major coat pr
59.1.1.1.1.1         ______1g2cI   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.1.1.1.1.1         ______1g2cA   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.1.1.1.1.1         ______1g2cQ   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.1.1.1.1.1         ______1g2cO   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.1.1.1.1.1         ______1g2cK   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.1.1.1.1.1         ______1czqA   alignment  fusion protein between the hydrophobic pocket of hiv gp41 an
59.1.1.1.1.1         ______1ci6B   alignment  transcription factor atf-4 transcription factor cEBP BETA   
59.1.1.1.1.1         ______1vdfA   alignment  cartilage oligomeric matrix protein fragment (comp) biologic
59.1.1.1.1.1         ______1fbmC   alignment  cartilage oligomeric matrix protein fragment (comp)         
59.1.1.1.1.1         ______1junA   alignment  c-jun homodimer fragment (junlz, junp1n) Mutant             
59.1.1.1.1.1         ______1g1iA   alignment  non-structural glycoprotein nsp4 fragment                   
59.1.1.1.1.1         ______1jekA   alignment  env polyprotein (coat polyprotein) env polyprotein (coat pol
59.1.1.1.1.1         ______2ifo    alignment  Inovirus (filamentous bacteriophage) strain xf major coat pr
59.1.1.1.1.1         ______1pfiA   alignment  Major coat protein of pf1 virus (model for pf1 virus) comple
59.1.1.1.1.1         ______1ifp    alignment  major coat protein assembly (pf3 inovirus)                  
59.1.1.1.1.1         ______1aq5A   alignment  cartilage matrix protein fragment (matrilin-1, cmp) Mutant b
59.2.1.1.1.1         _1sfcC        alignment  synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-
59.2.2.1.1.1         __1sfcB       alignment  synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-
59.2.2.1.1.1         ______1sfcE   alignment  synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-
59.2.2.1.1.1         ______1sfcA   alignment  synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-
59.2.2.1.1.1         ______1hvvA   alignment  syntaxin 1a fragment (neuron-specific antigen hpc-1, synapto
59.2.2.1.1.1         ______1gd2G   alignment  DNA (5'-d(ApGpGpTpTpApCpGpTpApApCpC) -3') transcription fact
59.2.2.1.1.1         ______1hjbA   alignment  ccaatENHANCER BINDING PROTEIN BETA fragment (cEBP BETA, NFIL
59.2.2.1.1.1         ______1svfA   alignment  fusion glycoprotein fragment Mutant fusion glycoprotein frag
59.2.3.1.1.1         __1sfcD       alignment  synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-
59.2.4.1.1.1         __1d7mA       alignment  cortexillin i fragment                                      
59.2.5.1.1.1         __1aa0        alignment  fibritin fragment (gpwac e) biological_unit                 
59.2.6.1.1.1         __1wdcA       alignment  scallop myosin fragment                                     
59.2.7.1.1.1         __1c1gB       alignment  tropomyosin                                                 
59.2.7.1.1.1         ______1c1gA   alignment  tropomyosin                                                 
59.2.8.1.1.1         __1av1A       alignment  apolipoprotein a-i fragment (apo a-i) Mutant                
59.2.9.1.1.1         __1htmB       alignment  Hemagglutinin ectodomain (soluble fragment, tbha2)          
59.2.10.1.1.1        __1qu1A       alignment  influenza recombinant ha2 chain                             
59.2.11.1.1.1        __1dkgA       alignment  nucleotide exchange factor grpe Mutant molecular chaperone d
59.3.1.1.1.1         _2cpb         alignment  m13 major coat protein (m13 gene-viii-protein or m13 gviiip)
59.4.1.1.1.1         _1avoA        alignment  11s regulator (reg(alpha), pa28(alpha)) biological_unit     
59.5.1.1.1.1         _1ql1A        alignment  pf1 bacteriophage coat protein b (pf1 inovirus)             
59.6.1.1.1.1         _1fu1B        alignment  DNA repair protein xrcc4 fragment Mutant                    
59.6.2.1.1.1         __1ezjA       alignment  nucleocapsid phosphoprotein fragment (RNA polymerase alpha s
59.7.1.1.1.1         _2occI        alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
59.8.1.1.1.1         _1an2A        alignment  max protein fragment (myn protein) biological_unit DNA      
59.8.2.1.1.1         __1am9A       alignment  sterol regulatory element binding protein 1a fragment (srebp
59.9.1.1.1.1         _2sivA        alignment  siv gp41 glycoprotein fragment (n36C34 CORE) biological_unit
59.10.1.1.1.1        _1a92A        alignment  delta antigen fragment (hepatitis delta antigen) Mutant biol
59.11.1.1.1.1        _1dx7A        alignment  light-harvesting protein b-875-beta chain (lh1b, antenna pig
59.12.1.1.1.1        _1bgyE        alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
59.13.1.1.1.1        _1ce0A        alignment  leucine zipper model h38-p1                                 
59.13.1.1.1.1        ______1bb1A   alignment  designed, thermostable heterotrimeric coiled coil           
59.13.1.1.1.1        ______1jekB   alignment  env polyprotein (coat polyprotein) env polyprotein (coat pol
59.13.1.1.1.1        ______2sivB   alignment  siv gp41 glycoprotein fragment (n36C34 CORE) biological_unit
59.13.1.1.1.1        ______1wfbA   alignment  Antifreeze protein isoform hplc6 (-180 degrees c)           
59.13.1.1.1.1        ______1tiiC   alignment  heat labile enterotoxin type iib (lt-iib)                   
59.13.1.1.1.1        ______1aikN   alignment  hiv-1 gp41 glycoprotein fragment                            
59.13.1.1.1.1        ______1hf9A   alignment  atpase inhibitor (mitochondrial) (if1) fragment             
59.13.1.1.1.1        ______1g2cB   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.13.1.1.1.1        ______1c94A   alignment  retro-gcn4 leucine zipper                                   
59.14.1.1.1.1        _1lghB        alignment  light harvesting complex ii (lh ii, b800850) biological_unit
59.14.1.1.1.1        ______1kzuB   alignment  light harvesting protein b-800850 (lh2)                     
59.14.1.1.1.1        ______1ijdB   alignment  light-harvesting protein b-800820, ALPHA CHAIN (antenna pigm
59.15.1.1.1.1        _2ztaA        alignment  GCN4 leucine zipper                                         
59.15.1.1.1.1        ______1dp5B   alignment  proteinase a (aspartate protease) proteinase inhibitor ia3 (
59.15.1.1.1.1        ______1a2xB   alignment  troponin c biological_unit troponin i fragment              
59.16.1.1.1.1        _1a93B        alignment  c-myc-max fragment (coiled coil, lz) biological_unit        
59.16.1.1.1.1        ______1a93A   alignment  c-myc-max fragment (coiled coil, lz) biological_unit        
59.17.1.1.1.1        _1ehkC        alignment  ba3-type cytochrome-c oxidase fragment ba3-type cytochrome-c
59.18.1.1.1.1        _1afoA        alignment  glycophorin a fragment                                      
59.19.1.1.1.1        _1qeyA        alignment  regulatory protein mnt fragment (mnt-c)                     
59.20.1.1.1.1        _1fmhB        alignment  general control protein gcn4 fragment Mutant general control
59.21.1.1.1.1        _1ce9C        alignment  gcn4-pmse Mutant                                            
59.22.1.1.1.1        _1jq2A        alignment  voltage-gated potassium channel fragment                    
59.23.1.1.1.1        _1spf         alignment  Pulmonary surfactant-associated polypeptide c(sp-c) (NMR, 20
59.24.1.1.1.1        _1dxzA        alignment  acetylcholine receptor protein, alpha chain fragment        
59.25.1.1.1.1        _1b9uA        alignment  atp synthase fragment                                       
59.26.1.1.1.1        _1qgkB        alignment  importin beta subunit (karyopherin beta-1, nuclear factor p9
59.27.1.1.1.1        _1qleD        alignment  cytochrome c oxidase polypeptide i-beta (cytochrome aa3 subu
59.27.1.1.1.1        ______1g2cL   alignment  fusion protein (f) fragment (cell fusion glycoprotein) fusio
59.28.1.1.1.1        _1svfB        alignment  fusion glycoprotein fragment Mutant fusion glycoprotein frag
59.29.1.1.1.1        _1iijA        alignment  erbb-2 receptor protein-tyrosine kinase fragment            
59.30.1.1.1.1        _2occM        alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
59.31.1.1.1.1        _1jb0M        alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
59.32.1.1.1.1        _1jb0I        alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
59.33.1.1.1.1        _1tmzA        alignment  tmzip biological_unit                                       
59.34.1.1.1.1        _1bde         alignment  vpr protein fragment                                        
59.35.1.1.1.1        _1hgeB        alignment  Hemagglutinin (bromelain digested) mutant with gly 135 repla
59.35.2.1.1.1        __1flcB       alignment  haemagglutinin-esterase-fusion glycoprotein fragment haemagg
59.35.3.1.1.1        __2spcA       alignment  Spectrin (one repeat unit)                                  
59.36.1.1.1.1        _1hh0A        alignment  ph75 inovirus major coat protein (ph75 bacteriophage major c
59.37.1.1.1.1        _1lghA        alignment  light harvesting complex ii (lh ii, b800850) biological_unit
59.37.1.1.1.1        ______1kzuA   alignment  light harvesting protein b-800850 (lh2)                     
59.38.1.1.1.1        _1be3J        alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
59.39.1.1.1.1        _1qcrK        alignment  ubiquinol cytochrome c oxidoreductase (cytochrome bc1, qcr) 
59.40.1.1.1.1        _1vpc         alignment  vpr protein fragment (vpr hiv-1 (lai))                      
60.1.1.1.1.1         1mof          alignment  moloney murine leukemia virus p15 fragment residues 45 - 98;
60.1.2.1.1.1         __2eboA       alignment  ebola virus envelope glycoprotein fragment Mutant biological
60.1.3.1.1.1         __1fzgD       alignment  fibrinogen fragment                                         
61.1.1.1.1.1         1fjkA         alignment  cardiac phospholamban Mutant                                
61.2.1.1.1.1         _1bct         alignment  Bacteriorhodopsin (fragment 163-231) (NMR, 14 structures)   
61.3.1.1.1.1         _2cps         alignment  m13 major coat protein (m13 gene-viii-protein or m13 gviiip)
62.1.1.1.1.1         2occL         alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
62.2.1.1.1.1         _2occJ        alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
63.1.1.1.1.1         1peh          alignment  pepnh1 fragment (cytidylyltransferase membrane binding domai
63.2.1.1.1.1         _1lyp         alignment  Cap18 (residues 106 - 137) (NMR, minimized best structure)  
63.3.1.1.1.1         _1b9pA        alignment  collagen alpha 1 fragment (alpha 1 type xiv collagen) Mutant
63.4.1.1.1.1         _1opp         alignment  apolipoprotein c-i fragment (apo-ci)                        
63.5.1.1.1.1         _1ezeA        alignment  cholesteryl ester transferase inhibitor protein (cetip, apol
64.1.1.1.1.1         1jy2P         alignment  fibrinogen alpha chain fibrinogen beta chain fibrinogen gamm
64.2.1.1.1.1         _1jy2N        alignment  fibrinogen alpha chain fibrinogen beta chain fibrinogen gamm
64.3.1.1.1.1         _1jy2O        alignment  fibrinogen alpha chain fibrinogen beta chain fibrinogen gamm
65.1.1.1.1.1         1qcrD         alignment  ubiquinol cytochrome c oxidoreductase (cytochrome bc1, qcr) 
66.1.1.1.1.1         1gd2I         alignment  DNA (5'-d(ApGpGpTpTpApCpGpTpApApCpC) -3') transcription fact
67.1.1.1.1.1         1ltsC         alignment  Heat-labile enterotoxin (lt)                                
67.2.1.1.1.1         _1ltaC        alignment  Heat-labile enterotoxin (lt) complex with galactose         
67.3.1.1.1.1         _2occK        alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
67.4.1.1.1.1         _1ocrD        alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
68.1.1.1.1.1         1esxA         alignment  vpr protein (viral protein of regulation)                   
68.2.1.1.1.1         _1jb0J        alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
69.1.1.1.1.1         1bnxA         alignment  band 3 fragment (sao, anion exchange protein 1) Mutant      
70.1.1.1.1.1         1dowB         alignment  alpha-catenin fragment beta-catenin fragment                
71.1.1.1.1.1         1a7w          alignment  histone hmfb biological_unit                                
71.1.1.1.1.1         ______1tafA   alignment  tfiid tbp associated factor 42 fragment Mutant tfiid tbp ass
71.1.1.1.1.1         ______1tafB   alignment  tfiid tbp associated factor 42 fragment Mutant tfiid tbp ass
71.1.2.1.1.1         __1bh9B       alignment  tafii18 fragment (transcription initiation factor tfiid 18 k
71.1.2.2.1.1         ___1aoiA      alignment  histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'
71.1.3.1.1.1         __1jfiB       alignment  transcription regulator nc2 alpha chain fragment transcripti
71.1.3.2.1.1         ___1aoiD      alignment  histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'
71.1.3.3.1.1         ___1aoiB      alignment  histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'
71.1.4.1.1.1         __1jfiA       alignment  transcription regulator nc2 alpha chain fragment transcripti
71.1.5.1.1.1         __1aoiC       alignment  histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'
71.1.6.1.1.1         __1bh9A       alignment  tafii18 fragment (transcription initiation factor tfiid 18 k
72.1.1.1.1.1         1ezvG         alignment  ubiquinol-cytochrome c reductase complex core protein i frag
72.2.1.1.1.1         _1be3G        alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
73.1.1.1.1.1         1hbwA         alignment  regulatory protein gal4 fragment Mutant                     
74.1.1.1.1.1         1dipB         alignment  delta-sleep-inducing peptide immunoreactive peptide (dsip-im
75.1.1.1.1.1         1dipA         alignment  delta-sleep-inducing peptide immunoreactive peptide (dsip-im
76.1.1.1.1.1         1an4A         alignment  usf fragment (upstream stimulatory factor 1) Mutant biologic
76.2.1.1.1.1         _1mdyA        alignment  Myod basic-helix-loop-helix (bhlh) domain (residues 102 - 16
76.3.1.1.1.1         _1a0aA        alignment  phosphate system positive regulatory protein pho4 fragment (
77.1.1.1.1.1         1cw5A         alignment  type iia bacteriocin carnobacteriocin b2                    
78.1.1.1.1.1         1psm          alignment  Spam-h1 (residues 90 - 127 of the secreted polymorphic antig
79.1.1.1.1.1         1ioj          alignment  apoc-i                                                      
80.1.1.1.1.1         4aahB         alignment  methanol dehydrogenase (medh)                               
81.1.1.1.1.1         1bmx          alignment  human immunodeficiency virus type 1 capsid fragment (hiv-1 p
82.1.1.1.1.1         1bm4A         alignment  moloney murine leukemia virus capsid fragment (momlv ca mhr 
83.1.1.1.1.1         1olgA         alignment  P53 (oligomerization domain) (NMR, minimized average structu
83.2.1.1.1.1         _1ba4         alignment  amyloid beta-peptide fragment                               
84.1.1.1.1.1         1kveA         alignment  smk toxin fragment                                          
85.1.1.1.1.1         1zto          alignment  potassium channel protein rck4 fragment                     
86.1.1.1.1.1         1e9kA         alignment  camp specific phosphodiesterase pde4d5 fragment             
87.1.1.1.1.1         1hpy          alignment  parathyroid hormone fragment                                
88.1.1.1.1.1         1qfqB         alignment  n-protein nutboxb fragment RNA (5'-r(pGpCpCpCpUpGpApApApApAp
89.1.1.1.1.1         1c9qA         alignment  apoptosis inhibitor iap homolog fragment Mutant             
89.1.2.1.1.1         __1f3hA       alignment  survivin (apoptosis inhibitor 4) Mutant                     
89.1.3.1.1.1         __1g3fA       alignment  inhibitor of apoptosis protein 3 fragment (x-linked inhibito
90.1.1.1.1.1         3ygsP         alignment  apoptotic protease activating factor 1 fragment procaspase 9
90.1.1.2.1.1         ___1cy5A      alignment  apoptotic protease activating factor 1 fragment (apaf-1 card
90.1.1.3.1.1         ___1dgnA      alignment  iceberg (protease inhibitor) fragment                       
90.1.1.4.1.1         ___3crd       alignment  raidd fragment                                              
90.1.2.1.1.1         __1a1z        alignment  fadd protein fragment (fas-associating death domain-containi
90.1.3.1.1.1         __1d2zB       alignment  death domain of pelle death domain of tube                  
90.1.3.2.1.1         ___1d2zA      alignment  death domain of pelle death domain of tube                  
90.1.3.3.1.1         ___1ngr       alignment  p75 low affinity neurotrophin receptor fragment             
90.1.4.1.1.1         __1fadA       alignment  fadd protein fragment Mutant                                
90.1.5.1.1.1         __1ddf        alignment  fas                                                         
91.1.1.1.1.1         1qsaA         alignment  soluble lytic transglycosylase slt70 fragment               
91.1.1.2.1.1         ___153l       alignment  Lysozyme                                                    
91.1.1.3.1.1         ___1ltm       alignment  36 kda soluble lytic transglycosylase fragment (35 kd solubl
91.1.2.1.1.1         __3lzt        alignment  lysozyme                                                    
91.1.3.1.1.1         __1cnsA       alignment  chitinase                                                   
91.1.4.1.1.1         __1am7A       alignment  lysozyme ec                                                 
91.2.1.1.1.1         _1qgiA        alignment  chitosanase                                                 
91.2.1.1.2.1         ____1chkA     alignment  chitosanase (endochitosanase)                               
91.2.2.1.1.1         __1l92        alignment  Lysozyme mutant with cys 54 replaced by thr, cys 97 replaced
92.1.1.1.1.1         1cokA         alignment  second splice variant p73 fragment                          
92.1.2.1.1.1         __1b4fA       alignment  ephb2 fragment                                              
92.1.3.1.1.1         __1qckA       alignment  barrier-to-autointegration factor                           
92.2.1.1.1.1         _1coo         alignment  RNA polymerase alpha subunit fragment                       
93.1.1.1.1.1         1mun          alignment  adenine glycosylase fragment Mutant                         
93.1.1.1.2.1         ____2abk      alignment  endonuclease iii                                            
93.1.1.2.1.1         ___1mpgA      alignment  3-methyladenine DNA glycosylase ii (alka) biological_unit   
93.1.1.2.2.1         ____1ebmA     alignment  8-oxoguanine DNA glycosylase fragment (ap lyase) Mutant DNA 
94.1.1.1.1.1         1bqv          alignment  ets-1 fragment (pnt, pointed) biological_unit               
95.1.1.1.1.1         1b22A         alignment  DNA repair protein rad51 fragment                           
96.1.1.1.1.1         1ef4A         alignment  DNA-directed RNA polymerase fragment (subunit n)            
97.1.1.1.1.1         1gd5A         alignment  neutrophil cytosol factor 1 fragment                        
97.2.1.1.1.1         _1qcnA        alignment  fumarylacetoacetate hydrolase                               
98.1.1.1.1.1         1mwpA         alignment  amyloid a4 protein fragment                                 
99.1.1.1.1.1         1ncx          alignment  troponin c                                                  
99.1.1.2.1.1         ___1cll       alignment  Calmodulin (vertebrate)                                     
99.1.1.3.1.1         ___1dguA      alignment  calcium-saturated cib                                       
99.1.1.3.1.1         ______1auiB   alignment  serineTHREONINE PHOSPHATASE 2B (calcineurin)                
99.1.1.4.1.1         ___1rec       alignment  Recoverin (calcium sensor in vision)                        
99.1.2.1.1.1         __1a75A       alignment  parvalbumin                                                 
99.1.3.1.1.1         __1wdcB       alignment  scallop myosin fragment                                     
99.1.3.2.1.1         ___1wdcC      alignment  scallop myosin fragment                                     
99.1.4.1.1.1         __1hqvA       alignment  programmed cell death protein 6 (probable calcium-binding pr
99.1.4.2.1.1         ___1alvA      alignment  calpain fragment (s-camld)                                  
99.1.4.3.1.1         ___1dkvA      alignment  m-calpain fragment (calcium-activated neutral proteinase) Mu
99.1.5.1.1.1         __4icb        alignment  Calbindin d9k (minor a form)                                
99.1.5.2.1.1         ___1psrA      alignment  psoriasin (s100a7)                                          
99.1.6.1.1.1         __1ggwA       alignment  cdc4p (ef-hand protein, myosin light chain)                 
99.2.1.1.1.1         _2scpA        alignment  Sarcoplasmic calcium-binding protein                        
99.2.1.2.1.1         ___2sas       alignment  Sarcoplasmic calcium-binding protein (iso type ii)          
99.2.1.3.1.1         ___1ej3A      alignment  aequorin                                                    
99.2.2.1.1.1         __1sra        alignment  sparc fragment (bm-40, osteonectin)                         
99.3.1.1.1.1         _1iq3A        alignment  ralbp1-interacting protein (partner of ralbp1) fragment     
99.3.2.1.1.1         __1eh2        alignment  eps15 fragment (eh2, epidermal growth factor receptor substr
99.3.3.1.1.1         __1j7rA       alignment  calcium vector protein fragment (cavp)                      
99.4.1.1.1.1         _1eg3A        alignment  dystrophin fragment                                         
99.5.1.1.1.1         _1h8bA        alignment  alpha-actinin 2, skeletal muscle isoform fragment (act-ef34)
100.1.1.1.1.1        1dqeA         alignment  pheromone-binding protein (pbp)                             
100.1.2.1.1.1        __1c3yA       alignment  thp12 carrier protein                                       
101.1.1.1.1.1        1cpo          alignment  chloroperoxidase (cpo, clp)                                 
102.1.1.1.1.1        1qrjB         alignment  his tag htlv-i capsid protein                               
102.1.1.2.1.1        ___1d1dA      alignment  capsid protein Mutant                                       
102.1.1.3.1.1        ___1ak4C      alignment  cyclophilin a biological_unit hiv-1 capsid fragment Mutant b
102.1.1.4.1.1        ___1eia       alignment  eiav capsid protein p26                                     
102.1.2.1.1.1        __1a8o        alignment  hiv capsid fragment Mutant biological_unit                  
103.1.1.1.1.1        1dv5A         alignment  apo-d-alanyl carrier protein fragment (apo-dcp)             
103.1.2.1.1.1        __1dnyA       alignment  non-ribosomal peptide synthetase peptidyl carrier protein fr
103.1.3.1.1.1        __2af8        alignment  actinorhodin polyketide synthase acyl carrier protein (act a
103.2.1.1.1.1        _1acp         alignment  Acyl carrier protein (NMR, 2 structures)                    
104.1.1.1.1.1        1nkl          alignment  nk-lysin                                                    
104.2.1.1.1.1        _2btvA        alignment  vp3 core protein fragment (t2a, t2b) vp7 core protein fragme
104.3.1.1.1.1        _1e68A        alignment  bacteriocin as-48 fragment                                  
105.1.1.1.1.1        1ej5A         alignment  wiskott-aldrich syndrome protein (wasp)                     
106.1.1.1.1.1        1ddcA         alignment  split-soret cytochrome c biological_unit                    
107.1.1.1.1.1        1qagA         alignment  utrophin actin binding region fragment Mutant               
107.1.1.1.1.1        ______1bkrA   alignment  spectrin beta chain fragment (calponin homology (ch) domain)
107.1.1.2.1.1        ___1aoa       alignment  t-fimbrin fragment                                          
108.1.1.1.1.1        1baq          alignment  antitermination factor nusb                                 
109.1.1.1.1.1        1b64          alignment  elongation factor 1-beta fragment                           
109.1.2.1.1.1        __1ris        alignment  Ribosomal protein s6                                        
109.1.3.1.1.1        __2acy        alignment  acylphosphatase (acp) biological_unit                       
109.1.4.1.1.1        __1cc8A       alignment  metallochaperone atx1                                       
109.1.4.2.1.1        ___1aw0       alignment  menkes copper-transporting atpase fragment                  
109.1.5.1.1.1        __1qd1A       alignment  formiminotransferase-cyclodeaminase fragment                
109.1.6.1.1.1        __2pii        alignment  pii (glnb product)                                          
109.1.7.1.1.1        __1dj0A       alignment  pseudouridine synthase i                                    
109.1.8.1.1.1        __1fjfJ       alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
109.1.9.1.1.1        __1ftrA       alignment  formylmethanofuran:tetrahydromethanopterin formyltransferase
109.1.10.1.1.1       __1gh8A       alignment  translation elongation factor 1beta                         
109.1.11.1.1.1       __1hka        alignment  6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (hppk) b
109.1.12.1.1.1       __1pytA       alignment  procarboxypeptidase a proproteinase e chymotrypsinogen c (tc
109.1.13.1.1.1       __1mla        alignment  malonyl-coenzyme a acyl carrier protein transacylase (malony
109.1.14.1.1.1       __1qaxA       alignment  3-hydroxy-3-methylglutaryl-coenzyme a reductase biological_u
109.1.14.1.2.1       ____1dqaA     alignment  hmg-coa reductase fragment Mutant                           
109.1.15.1.1.1       __1ekrA       alignment  molybdenum cofactor biosynthesis protein c Mutant           
109.1.16.1.1.1       __2bopA       alignment  Bovine papillomavirus-1 e2 (DNA-binding domain) (residues 32
109.1.16.2.1.1       ___1f9fA      alignment  regulatory protein e2 fragment                              
109.1.17.1.1.1       __1b3tA       alignment  nuclear protein ebna1 fragment (ebna-1 nuclear protein) DNA 
109.2.1.1.1.1        _1cvjB        alignment  polydenylate binding protein 1 fragment (poly(a) binding pro
109.2.1.2.1.1        ___1b7fA      alignment  sxl-lethal protein fragment Mutant RNA (5'-r(pGpUpUpGpUpUpUp
109.2.1.3.1.1        ___1h6kZ      alignment  cbp80 fragment (ncbp 80 kda subunit, cbp80) fragment Mutant 
109.2.1.4.1.1        ___1ha1       alignment  hnrnp a1 fragment (heterogeneous nuclear ribonucleoprotein a
109.2.1.5.1.1        ___1urnA      alignment  u1a spliceosomal protein fragment Mutant RNA 21mer hairpin (
109.2.1.6.1.1        ___1jmtA      alignment  splicing factor u2af 35 kda subunit (u2 snrnp auxiliary fact
109.2.1.7.1.1        ___2u2fA      alignment  splicing factor u2af 65 kd subunit fragment                 
109.2.1.8.1.1        ___1fjcA      alignment  nucleolin rbd2 (protein c23)                                
109.2.2.1.1.1        __2u1a        alignment  u1 small nuclear ribonucleoprotein a fragment (u1 snrnp a pr
109.2.3.1.1.1        __1u2fA       alignment  splicing factor u2af 65 kd subunit fragment                 
109.2.4.1.1.1        __1fj7A       alignment  nucleolin rbd1 (protein c23)                                
109.2.5.1.1.1        __1qm9A       alignment  polypyrimidine tract-binding protein fragment               
109.2.6.1.1.1        __1scjB       alignment  subtilisin e (serine protease) Mutant                       
109.3.1.1.1.1        _1eayC        alignment  chey chea fragment                                          
109.3.2.1.1.1        __1jqsC       alignment  50s ribosomal protein l11 elongation factor g fragment (ef-g
109.4.1.1.1.1        _8atcB        alignment  Aspartate carbamoyltransferase (aspartate transcarbamylase) 
109.5.1.1.1.1        _2tbd         alignment  sv40 t antigen fragment                                     
109.5.2.1.1.1        __1f08A       alignment  replication protein e1 fragment                             
109.6.1.1.1.1        _1npk         alignment  Nucleoside diphosphate kinase                               
109.7.1.1.1.1        _1f3vA        alignment  tumor necrosis factor receptor type 1 associated death domai
109.8.1.1.1.1        _1mli         alignment  Muconolactone isomerase                                     
109.8.2.1.1.1        __1el6B       alignment  baseplate structural protein gp11                           
109.9.1.1.1.1        _1tgoA        alignment  thermostable b DNA polymerase                               
109.9.1.1.2.1        ____1clqA     alignment  DNA polymerase fragment (gp43) DNA (5'-d(GpCpGpGpApApCpTpApC
109.9.1.2.1.1        ___1fxxA      alignment  exonuclease i (exodeoxyribonuclease i)                      
109.9.1.3.1.1        ___1xwl       alignment  DNA polymerase i fragment (bf)                              
109.9.1.3.1.1        ______1taq    alignment  taq DNA polymerase (taq) Mutant                             
109.9.1.3.2.1        ____1t7pA     alignment  DNA polymerase Mutant thioredoxin DNA                       
109.9.2.1.1.1        __1cezA       alignment  bacteriophage t7 RNA polymerase biological_unit DNA (5'- d(p
109.9.3.1.1.1        __1azsA       alignment  vc1 fragment Mutant iic2 fragment gs-alpha (stimulatory g-pr
109.9.3.1.2.1        ____1fx2A     alignment  receptor-type adenylate cyclase gresag 4.1 fragment         
109.9.3.2.1.1        ___1im4A      alignment  dbh fragment (dbh bypass polymerase)                        
109.10.1.1.1.1       _1mml         alignment  mmlv reverse transcriptase                                  
109.10.1.1.2.1       ____1rthA     alignment  hiv-1 reverse transcriptase (hiv-1 rt)                      
109.10.2.1.1.1       __1dcpA       alignment  dcoh (dimerization cofactor of hepatocyte nuclear factor 1-a
109.11.1.1.1.1       _1rdr         alignment  poliovirus 3d polymerase                                    
109.11.1.2.1.1       ___1quvA      alignment  RNA-directed RNA polymerase fragment (ns5b) Mutant          
109.11.1.3.1.1       ___1hi0P      alignment  p2 protein (RNA-directed RNA polymerase) DNA (5'-(TpTpTpCpC)
110.1.1.1.1.1        1vih          alignment  vigilin fragment                                            
110.1.1.2.1.1        ___1dt4A      alignment  neuro-oncological ventral antigen 1 fragment Mutant         
110.1.2.1.1.1        __2fmr        alignment  fmr1 protein fragment (kh1)                                 
110.2.1.1.1.1        _1ffk1        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
110.2.1.1.1.1        ______1rl6A   alignment  ribosomal protein l6                                        
110.3.1.1.1.1        _1ptf         alignment  Histidine-containing phosphocarrier protein (hpr)           
110.3.2.1.1.1        __1ctf        alignment  L7/L12 50 s ribosomal protein (c-terminal domain)           
110.4.1.1.1.1        _1f46A        alignment  cell division protein zipa                                  
110.4.2.1.1.1        __1ytbA       alignment  Tata-box binding protein (ytbp) complexed with DNA containin
110.5.1.1.1.1        _1qh4A        alignment  creatine kinase, b chain (bb-ck, brain-type creatine kinase)
110.5.2.1.1.1        __1lgr        alignment  Glutamine synthetase complexed with amp                     
110.6.1.1.1.1        _1regX        alignment  t4 rega                                                     
111.1.1.1.1.1        1hr6A         alignment  mitochondrial processing peptidase alpha subunit (alpha-mpp)
111.1.1.1.1.2        _____1be3A    alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
111.1.1.1.1.3        _____1be3B    alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
111.1.1.1.2.1        ____1ezvB     alignment  ubiquinol-cytochrome c reductase complex core protein i frag
111.1.2.1.1.1        __1j98A       alignment  autoinducer-2 production protein luxs (ai-2 synthesis protei
111.2.1.1.1.1        _1ap8         alignment  translation initiation factor eif4e                         
111.2.1.2.1.1        ___1ejhA      alignment  eukaryotic initiation factor 4e fragment eukaryotic initiati
111.3.1.1.1.1        _1ffkF        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
112.1.1.1.1.1        1fvaA         alignment  peptide methionine sulfoxide reductase                      
113.1.1.1.1.1        1jidA         alignment  signal recognition particle 19 kda protein fragment helix 6 
113.2.1.1.1.1        _1kp6A        alignment  toxin                                                       
114.1.1.1.1.1        1f0xA         alignment  d-lactate dehydrogenase (dldh)                              
114.1.1.1.2.1        ____1qltA     alignment  vanillyl-alcohol oxidase (aryl-alcohol oxidase,4-allylphenol
114.1.1.1.3.1        ____1i19A     alignment  cholesterol oxidase                                         
114.1.1.2.1.1        ___2mbr       alignment  uridine diphospho-n-acetylenolpyruvylglucosamine reductase (
114.1.2.1.1.1        __1qj2C       alignment  carbon monoxide dehydrogenase carbon monoxide dehydrogenase 
114.1.2.1.2.1        ____1fiqB     alignment  xanthine oxidase fragment (xo) xanthine oxidase fragment (xo
115.1.1.1.1.1        1xxaA         alignment  arginine repressor fragment (argr) l-arginine (arg)         
115.1.2.1.1.1        __1bdfA       alignment  RNA polymerase alpha subunit fragment Mutant biological_unit
115.1.3.1.1.1        __1ab4        alignment  gyrase a fragment                                           
115.1.3.1.2.1        ____1bjt      alignment  topoisomerase ii fragment                                   
115.2.1.1.1.1        _2if1         alignment  eif1 (sui1)                                                 
115.2.2.1.1.1        __1d1rA       alignment  hypothetical 11.4 kd protein ycih in pyrf-osmb intergenic re
116.1.1.1.1.1        1am2          alignment  mxe gyra intein Mutant                                      
116.1.1.1.2.1        ____1at0      alignment  17-hedgehog fragment                                        
116.1.1.1.3.1        ____1dq3A     alignment  endonuclease                                                
116.1.1.2.1.1        ___1vdeA      alignment  pi-scei                                                     
116.1.1.3.1.1        ___1b24A      alignment  i-dmoi biological_unit                                      
116.2.1.1.1.1        _1bp7A        alignment  i-crei (DNA endonuclease i-crei) biological_unit DNA (homing
117.1.1.1.1.1        1fa0B         alignment  poly(a)-polymerase fragment                                 
117.1.1.2.1.1        ___1bpyA      alignment  DNA polymerase beta (pol beta, beta-pol) biological_unit gap
117.1.2.1.1.1        __1fjfC       alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
117.2.1.1.1.1        _3proC        alignment  alpha-lytic protease fragment Mutant biological_unit alpha-l
118.1.1.1.1.1        1dptA         alignment  d-dopachrome tautomerase biological_unit                    
118.1.1.2.1.1        ___1otgA      alignment  5-carboxymethyl-2-hydroxymuconate isomerase                 
118.1.2.1.1.1        __1ghhA       alignment  DNA-damage-inducible protein i (dini)                       
118.1.3.1.1.1        __1otfA       alignment  4-oxalocrotonate tautomerase (4-oxalocrotonate isomerase)   
119.1.1.1.1.1        1nox          alignment  nadh oxidase biological_unit                                
119.1.1.1.2.1        ____1vfrA     alignment  nad(p)h:fmn oxidoreductase (frase i, fmn reductase) biologic
119.1.1.1.3.1        ____1bkjA     alignment  nadph-flavin oxidoreductase (flavin reductase p, frp, fmn re
119.2.1.1.1.1        _1vhh         alignment  sonic hedgehog (hhg-1, vhh-1)                               
119.2.2.1.1.1        __1lbu        alignment  muramoyl-pentapeptide carboxypeptidase                      
120.1.1.1.1.1        1mroC         alignment  methyl-coenzyme m reductase biological_unit                 
121.1.1.1.1.1        1g10A         alignment  toluene-4-monooxygenase catalytic effector (toluene-4-monoox
121.1.2.1.1.1        __1ckv        alignment  protein b biological_unit                                   
121.2.1.1.1.1        _1hqi         alignment  phenol hydroxylase p2 protein biological_unit               
122.1.1.1.1.1        1g71A         alignment  DNA primase                                                 
123.1.1.1.1.1        1qj2B         alignment  carbon monoxide dehydrogenase carbon monoxide dehydrogenase 
123.1.1.1.1.2        _____1fiqC    alignment  xanthine oxidase fragment (xo) xanthine oxidase fragment (xo
123.1.1.1.1.3        _____1alo     alignment  aldehyde oxidoreductase (molybdenum iron sulfur protein, mop
123.1.2.1.1.1        __1b65A       alignment  aminopeptidase (dmpa) biological_unit                       
124.1.1.1.1.1        1bkpA         alignment  thymidylate synthase a biological_unit                      
124.1.1.1.2.1        ____1b5eA     alignment  deoxycytidylate hydroxymethylase (deoxycytidylate hydroxymet
125.1.1.1.1.1        1fwkA         alignment  homoserine kinase (hk)                                      
125.1.1.1.2.1        ____1fi4A     alignment  mevalonate 5-diphosphate decarboxylase (mdd, diphosphomevalo
125.1.2.1.1.1        __1fjfI       alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
125.2.1.1.1.1        _1e3hA        alignment  guanosine pentaphosphate synthetase (polynucleotide phosphor
125.2.2.1.1.1        __1a6f        alignment  ribonuclease p protein (rnase p protein) Mutant             
126.1.1.1.1.1        1jb0D         alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
126.2.1.1.1.1        _1b33N        alignment  allophycocyanin, alpha chain fragment allophycocyanin, beta 
127.1.1.1.1.1        1ffkT         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
127.1.2.1.1.1        __1bxyA       alignment  ribosomal protein l30                                       
128.1.1.1.1.1        1iq4A         alignment  50s ribosomal protein l5 Mutant                             
128.1.1.2.1.1        ___1ffkD      alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
129.1.1.1.1.1        1et0A         alignment  4-amino-4-deoxychorismate lyase (adc lyase)                 
129.1.1.1.2.1        ____1daaA     alignment  d-amino acid aminotransferase (d-alanine aminotransferase)  
129.1.1.1.3.1        ____1ekfA     alignment  branched chain amino acid aminotransferase (mitochondrial) (
130.1.1.1.1.1        1ffkO         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
130.1.1.2.1.1        ___1bxeA      alignment  ribosomal protein l22 Mutant                                
131.1.1.1.1.1        1fh6A         alignment  major capsid protein gp5 (bacteriophage hk97 capsid protein)
131.2.1.1.1.1        _1qdlA        alignment  anthranilate synthase (trpe-subunit) fragment anthranilate s
131.3.1.1.1.1        _1bowA        alignment  multidrug-efflux transporter 1 regulator bmrr fragment (brc)
131.3.1.2.1.1        ___1d5yA      alignment  rob transcription factor fragment (right origin-binding prot
132.1.1.1.1.1        1ev0A         alignment  mine fragment (cell division topological specificity factor)
133.1.1.1.1.1        1ffkI         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
134.1.1.1.1.1        1ihrA         alignment  tonb protein fragment                                       
135.1.1.1.1.1        1cfe          alignment  pathogenesis-related protein p14a fragment (pathogenesis-rel
135.1.1.2.1.1        ___1qnxA      alignment  ves v 5 (antigen 5)                                         
136.1.1.1.1.1        1dpuA         alignment  replication protein a (rpa32) c-terminal domain fragment ura
136.1.1.2.1.1        ___1bjaA      alignment  transcription regulatory protein mota fragment              
136.1.1.3.1.1        ___1smtA      alignment  transcriptional repressor smtb biological_unit              
136.1.1.4.1.1        ___1qbjA      alignment  double-stranded RNA specific adenosine deaminase (adar1) fra
136.1.2.1.1.1        __1hstA       alignment  Histone h5 (globular domain)                                
136.1.3.1.1.1        __1cf7B       alignment  transcription factor e2f-4 fragment transcription factor dp-
136.1.4.1.1.1        __2cgpA       alignment  catabolite gene activator protein DNA (5'-d(GpTpCpApCpApTpTp
136.1.4.2.1.1        ___1ft9A      alignment  carbon monoxide oxidation system transcription regulator (co
136.1.5.1.1.1        __1lea        alignment  Lexa repressor DNA binding domain (NMR, minimized average st
136.1.6.1.1.1        __2fokA       alignment  foki restriction endonuclease fragment (r.Foki) biological_u
136.1.7.1.1.1        __1bia        alignment  Bira bifunctional protein (acts as biotin operon repressor a
136.1.8.1.1.1        __1opc        alignment  ompr fragment (omprc)                                       
136.1.9.1.1.1        __1bm9A       alignment  replication terminator protein (rtp, ter) biological_unit   
136.1.10.1.1.1       __1e2xA       alignment  fatty acid metabolism regulator protein fragment            
136.1.11.1.1.1       __1bi0        alignment  diphtheria toxin repressor (dtxr) biological_unit           
136.1.12.1.1.1       __1b4aA       alignment  arginine repressor biological_unit                          
136.1.12.2.1.1       ___1aoy       alignment  arginine repressor fragment                                 
136.1.13.1.1.1       __1i27A       alignment  transcription factor iif fragment Mutant                    
136.1.14.1.1.1       __1d8jA       alignment  general transcription factor tfiie-beta fragment            
136.1.15.1.1.1       __2hfh        alignment  genesis fragment (hfh-2) biological_unit                    
136.1.16.1.1.1       __2bby        alignment  rap30 fragment                                              
136.2.1.1.1.1        _1fshA        alignment  dishevelled-1 fragment                                      
136.3.1.1.1.1        _1dp7P        alignment  mhc class ii transcription factor hrfx1 fragment (regulatory
136.4.1.1.1.1        _2ezh         alignment  transposase fragment                                        
136.5.1.1.1.1        _1fseA        alignment  gere                                                        
136.5.2.1.1.1        __1fc3A       alignment  spo0a fragment (sporulation response regulator)             
137.1.1.1.1.1        2irfG         alignment  interferon regulatory factor 2 fragment (irf-2) DNA (5'-d(pA
137.1.1.2.1.1        ___1awcA      alignment  ga binding protein alpha fragment (gabpalpha) ga binding pro
137.1.2.1.1.1        __2hts        alignment  Heat shock transcription factor (DNA binding domain)        
138.1.1.1.1.1        1mbe          alignment  myb proto-oncogene protein engineered                       
138.1.2.1.1.1        __1a5j        alignment  b-myb fragment                                              
138.1.3.1.1.1        __1ba5        alignment  htrf1 fragment (telomeric repeat binding factor 1)          
138.1.4.1.1.1        __6paxA       alignment  homeobox protein pax-6 biological_unit 26 nucleotide DNA bio
138.1.5.1.1.1        __1tc3C       alignment  DNA tc3 transposase fragment Mutant                         
138.1.6.1.1.1        __2hddA       alignment  engrailed homeodomain Mutant biological_unit DNA (20-mer)   
138.1.6.2.1.1        ___1au7A      alignment  pit-1 fragment (ghf-1) Mutant biological_unit DNA           
138.1.6.3.1.1        ___1akhA      alignment  mating-type protein a-1 mating-type protein alpha-2 (mat alp
138.1.6.4.1.1        ___1lfb       alignment  Transcription factor lfb1 (homeodomain)                     
138.1.7.1.1.1        __1akhB       alignment  mating-type protein a-1 mating-type protein alpha-2 (mat alp
138.1.8.1.1.1        __1fexA       alignment  trf2-interacting telomeric rap1 protein fragment Mutant     
138.2.1.1.1.1        _1hcrA        alignment  Hin recombinase (DNA-binding domain) complexed with DNA     
138.3.1.1.1.1        _2ezk         alignment  transposase fragment                                        
138.3.2.1.1.1        __1jhgA       alignment  trp operon repressor Mutant biological_unit trp biological_u
138.4.1.1.1.1        _1wjcA        alignment  hiv-1 integrase                                             
138.5.1.1.1.1        _1bw6A        alignment  centromere protein b fragment                               
138.6.1.1.1.1        _1ignA        alignment  rap1 fragment (grf1, tba, tuf, n1310, sbf-e) DNA (5'-d(ccgca
139.1.1.1.1.1        1qa6A         alignment  ribosomal protein l11 fragment 58 nucleotide ribosomal RNA d
140.1.1.1.1.1        1sfe          alignment  ada o6-methylguanine-DNA methyltransferase fragment         
140.1.1.1.2.1        ____1mgtA     alignment  o6-methylguanine-DNA methyltransferase (mgmt)               
141.1.1.1.1.1        1ret          alignment  Gamma delta resolvase (DNA binding domain) (NMR, 17 structur
141.2.1.1.1.1        _1g2hA        alignment  transcriptional regulatory protein tyrr homolog fragment    
141.3.1.1.1.1        _1ntcA        alignment  nitrogen regulation protein (ntrc) Mutant                   
141.3.2.1.1.1        __1fipA       alignment  Fis protein (factor for inversion stimulation) mutant with p
142.1.1.1.1.1        1orc          alignment  cro repressor insertion mutant k56-[dgevk] Mutant           
143.1.1.1.1.1        1i3jA         alignment  intron-associated endonuclease 1 fragment (i-tevi) 5'- d(TpT
144.1.1.1.1.1        1seiA         alignment  ribosomal protein s8                                        
144.1.2.1.1.1        __1repC       alignment  DNA (5'- d(CpCpTpGpTpGpApCpApApApTpTpGpCpCpCpTpCp ApGpT)-3')
144.2.1.1.1.1        _1dcjA        alignment  yhhp protein                                                
144.2.2.1.1.1        __1tig        alignment  translation initiation factor 3 (if3-c)                     
144.3.1.1.1.1        _1uae         alignment  udp-n-acetylglucosamine enolpyruvyl transferase (mura)      
144.3.1.1.2.1        ____1eps      alignment  5-enol-pyruvyl-3-phosphate synthase                         
144.3.1.2.1.1        ___1qmhA      alignment  RNA 3'-terminal phosphate cyclase                           
145.1.1.1.1.1        1qsmA         alignment  hpa2 histone acetyltransferase                              
145.1.1.2.1.1        ___1i21A      alignment  glucosamine-phosphate n-acetyltransferase (phosphoglucosamin
145.1.1.3.1.1        ___1bo4A      alignment  serratia marcescens aminoglycoside-3-n- acetyltransferase   
145.1.1.4.1.1        ___1b87A      alignment  aminoglycoside n6'-acetyltransferase type 1 (aac) Mutant bio
145.1.1.5.1.1        ___1cjwA      alignment  serotonin n-acetyltransferase biological_unit               
145.1.1.6.1.1        ___1yghA      alignment  transcriptional activator gcn5 fragment (ada4) biological_un
145.1.2.1.1.1        __1nmtA       alignment  n-myristoyl transferase biological_unit                     
145.1.3.1.1.1        __1fy7A       alignment  esa1 histone acetyltransferase fragment (esa1 hat, esa1 prot
145.1.3.1.2.1        ____1bob      alignment  histone acetyltransferase (hat1) biological_unit            
145.2.1.1.1.1        _1c8zA        alignment  tubby protein                                               
146.1.1.1.1.1        2vil          alignment  villin 14t fragment (villin domain 1, villin segment 1)     
146.1.1.2.1.1        ___1d0nA      alignment  horse plasma gelsolin                                       
146.1.1.3.1.1        ___1svy       alignment  severin fragment                                            
146.1.2.1.1.1        __1cof        alignment  cofilin                                                     
147.1.1.1.1.1        1avpA         alignment  adenoviral proteinase fragment (avp) biological_unit adenovi
147.1.1.2.1.1        ___1euvA      alignment  ulp1 protease fragment ubitqutin-like protein smt3 fragment 
148.1.1.1.1.1        1qpmA         alignment  mu bacteriophage c repressor protein fragment               
149.1.1.1.1.1        1efnB         alignment  fyn tyrosine kinase fragment (src-homology 3 domain) Mutant 
150.1.1.1.1.1        1ft8E         alignment  tip associating protein fragment (tap) Mutant               
151.1.1.1.1.1        1e6wA         alignment  short chain 3-hydroxyacyl-coa dehydrogenase (3-hydroxyacyl-c
151.1.1.1.2.1        ____1bdb      alignment  cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase biological_un
151.1.1.1.3.1        ____1ybvA     alignment  trihydroxynaphthalene reductase (naphthol reductase) Mutant 
151.1.1.1.4.1        ____1cydA     alignment  carbonyl reductase                                          
151.1.1.1.5.1        ____1e7wA     alignment  pteridine reductase                                         
151.1.1.1.6.1        ____1fds      alignment  17-beta-hydroxysteroid-dehydrogenase                        
151.1.1.1.7.1        ____1eny      alignment  enoyl-acyl carrier protein (acp) reductase (inha)           
151.1.1.1.8.1        ____1enp      alignment  enoyl acyl carrier protein reductase Mutant                 
151.1.1.1.9.1        ____1oaa      alignment  sepiapterin reductase biological_unit                       
151.1.1.1.10.1       ____1b16A     alignment  alcohol dehydrogenase                                       
151.1.1.1.11.1       ____1dhr      alignment  Dihydropteridine reductase (dhpr) complex with nadh         
151.1.1.1.12.1       ____1fjhB     alignment  3alpha-hydroxysteroid dehydrogenaseCARBONYL reductase (3alph
151.1.1.1.13.1       ____1hu4A     alignment  carbonyl reductase20BETA-HYDROXYSTEROID dehydrogenase       
151.1.1.1.14.1       ____1xel      alignment  udp-galactose 4-epimerase                                   
151.1.1.1.14.1       ______1bxkA   alignment  dtdp-glucose 4,6-dehydratase                                
151.1.1.1.14.2       _____1qrrA    alignment  sulfolipid biosynthesis (sqd1) protein                      
151.1.1.1.15.1       ____1db3A     alignment  gdp-mannose 4,6-dehydratase                                 
151.1.1.1.16.1       ____1bsvA     alignment  gdp-fucose synthetase (wcag, gdp-4-keto 6-deoxy-mannose 3,5-
151.1.1.1.17.1       ____1eq2A     alignment  adp-l-glycero-d-mannoheptose 6-epimerase                    
151.1.1.1.18.1       ____1he2A     alignment  biliverdin ix beta reductase (flavin reductase , nadph-depen
151.1.1.2.1.1        ___1hyhA      alignment  l-2-hydroxyisocaproate dehydrogenase (l-hicdh)              
151.1.1.2.1.1        ______1ceqA   alignment  l-lactate dehydrogenase                                     
151.1.1.2.1.1        ______3ldh    alignment  Lactate dehydrogenase m4 enzyme, ternary complex with NAD an
151.1.1.2.2.1        ____2cmd      alignment  Malate dehydrogenase                                        
151.1.1.2.3.1        ____1bmdA     alignment  Malate dehydrogenase (bacterial) complexed with nadh        
151.1.2.1.1.1        __1drw        alignment  dihydrodipicolinate reductase (dhpr, dapb)                  
151.1.2.2.1.1        ___1dapA      alignment  diaminopimelic acid dehydrogenase (dapdh)                   
151.1.2.3.1.1        ___1ff9A      alignment  saccharopine reductase                                      
151.1.2.4.1.1        ___1ofgA      alignment  glucose-fructose oxidoreductase                             
151.1.2.4.2.1        ____1gcuA     alignment  biliverdin reductase a                                      
151.1.2.4.3.1        ____1dpgA     alignment  glucose 6-phosphate dehydrogenase (g6pd) Mutant biological_u
151.1.2.5.1.1        ___1dssG      alignment  d-glyceraldehyde-3-phosphate-dehydrogenase fragment         
151.1.2.5.2.1        ____1b7gO     alignment  glyceraldehyde 3-phosphate dehydrogenase Mutant             
151.1.2.5.3.1        ____1brmA     alignment  aspartate-semialdehyde dehydrogenase (asadh, asdh) biologica
151.1.3.1.1.1        __1ebuA       alignment  homoserine dehydrogenase                                    
151.1.4.1.1.1        __2hdhA       alignment  l-3-hydroxyacyl coa dehydrogenase (schad)                   
151.1.4.1.2.1        ____1dliA     alignment  udp-glucose dehydrogenase                                   
151.1.4.1.3.1        ____2pgd      alignment  6-phosphogluconate dehydrogenase (6-pgdh)                   
151.1.4.2.1.1        ___1evyA      alignment  glycerol-3-phosphate dehydrogenase                          
151.1.4.2.2.1        ____1bg6      alignment  n-(1-d-carboxylethyl)-l-norvaline dehydrogenase biological_u
151.1.4.3.1.1        ___1qmgA      alignment  acetohydroxy-acid isomeroreductase (keto-acid reductoisomera
151.1.5.1.1.1        __1gdhA       alignment  D-glycerate dehydrogenase (apo form)                        
151.1.5.1.1.1        ______1dxy    alignment  d-2-hydroxyisocaproate dehydrogenase (d-hicdh, r-hicdh, r-2-
151.1.5.1.1.1        ______1psdA   alignment  D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydro
151.1.5.1.2.1        ____2nadA     alignment  Nad-dependent formate dehydrogenase (holo form) complexed wi
151.1.5.1.3.1        ____1qp8A     alignment  formate dehydrogenase biological_unit                       
151.1.5.2.1.1        ___1sayA      alignment  l-alanine dehydrogenase biological_unit                     
151.1.5.2.2.1        ____1b3rA     alignment  s-adenosylhomocysteine hydrolase fragment                   
151.1.5.3.1.1        ___1ee9A      alignment  5,10-methylenetetrahydrofolate dehydrogenase                
151.1.5.3.2.1        ____1a4iA     alignment  methylenetetrahydrofolate dehydrogenase methenyltetrahydrofo
151.1.5.4.1.1        ___3csuA      alignment  aspartate carbamoyltransferase fragment                     
151.1.5.4.2.1        ____1othA     alignment  ornithine transcarbamoylase biological_unit                 
151.1.5.5.1.1        ___1qr6A      alignment  malic enzyme 2 Mutant                                       
151.1.5.6.1.1        ___1k89       alignment  glutamate dehydrogenase Mutant biological_unit              
151.1.5.6.1.2        _____1hwyA    alignment  glutamate dehydrogenase (gdh)                               
151.1.5.6.1.3        _____1bw9A    alignment  phenylalanine dehydrogenase biological_unit                 
151.1.6.1.1.1        __1pedA       alignment  nadp-dependent alcohol dehydrogenase                        
151.1.6.1.1.2        _____1e3jA    alignment  nadp(h)-dependent ketose reductase                          
151.1.6.1.1.3        _____2ohxA    alignment  Alcohol dehydrogenase (holo form) complex with nadh and dmso
151.1.6.1.2.1        ____1qorA     alignment  Quinone oxidoreductase complexed with nadph                 
151.1.6.2.1.1        ___1id1A      alignment  putative potassium channel protein fragment                 
151.1.7.1.1.1        __1tlfA       alignment  Tryptic core fragment of the lactose repressor of escherichi
151.1.7.1.1.1        ______1qpzA   alignment  purine nucleotide synthesis repressor (pura) DNA (5'- d(TpAp
151.1.7.1.2.1        ____1bykA     alignment  trehalose operon repressor fragment                         
151.1.7.1.3.1        ____2dri      alignment  D-ribose-binding protein complexed with beta-d-ribose       
151.1.7.1.3.1        ______1gca    alignment  GlucoseGALACTOSE-BINDING PROTEIN COMPLEX WITH GALACTOSE     
151.1.7.1.4.1        ____8abp      alignment  L-Arabinose-binding protein (mutant with met 108 replaced by
151.1.7.2.1.1        ___1pea       alignment  amidase operon fragment                                     
151.1.7.2.2.1        ____1ewkA     alignment  metabotropic glutamate receptor subtype 1 fragment (mglur1) 
151.1.7.2.3.1        ____2liv      alignment  Leucine/Isoleucine/Valine-binding protein (LIVBP)           
151.1.7.2.4.1        ____1dp4A     alignment  atrial natriuretic peptide receptor a fragment              
151.1.7.3.1.1        ___1rvv1      alignment  riboflavin synthase                                         
151.1.7.3.2.1        ____1di0A     alignment  lumazine synthase                                           
151.1.7.4.1.1        ___2dhqA      alignment  3-dehydroquinate dehydratase (dehydroquinase) biological_uni
151.1.8.1.1.1        __1qczA       alignment  n5-carboxyaminoimidazole ribonucleotide mutase (pure)       
151.1.8.2.1.1        ___1fuiA      alignment  l-fucose isomerase biological_unit                          
151.1.8.3.1.1        ___2scuB      alignment  succinyl-coa ligase (scs) biological_unit succinyl-coa ligas
151.1.8.4.1.1        ___2scuA      alignment  succinyl-coa ligase (scs) biological_unit succinyl-coa ligas
151.1.9.1.1.1        __3chy        alignment  CheY                                                        
151.1.9.1.1.1        ______1dcfA   alignment  etr1 protein fragment                                       
151.1.9.2.1.1        ___1dbwA      alignment  transcriptional regulatory protein fixj fragment Mutant     
151.1.9.3.1.1        ___1dz3A      alignment  stage 0 sporulation protein a fragment                      
151.1.9.4.1.1        ___1a04A      alignment  nitrateNITRITE RESPONSE REGULATOR PROTEIN NARL fragment     
151.1.9.5.1.1        ___1qo0D      alignment  amic fragment amir fragment                                 
151.1.9.6.1.1        ___1bmtA      alignment  Methionine synthase (b12-binding domains)                   
151.1.10.1.1.1       __1iibA       alignment  enzyme iib of the cellobiose-specific phosphotransferase sys
151.1.11.1.1.1       __1be1        alignment  glutamate mutase fragment (muts)                            
151.1.12.1.1.1       __1jqaA       alignment  glycerol dehydrogenase Mutant                               
151.1.12.1.2.1       ____1dqsA     alignment  3-dehydroquinate synthase fragment (dhqs, 3-deoxy-d-arabino-
151.1.13.1.1.1       __1f0kA       alignment  udp-n-acetylglucosamine-n-acetylmuramyl- (pentapeptide) pyro
151.1.13.1.2.1       ____1iirA     alignment  glycosyltransferase gtfb (udp-glycosyltransferase gtfb)     
151.1.13.1.3.1       ____1f6dA     alignment  udp-n-acetylglucosamine 2-epimerase (udp-glcnac-2-epimerase,
151.1.13.2.1.1       ___1c3jA      alignment  beta-glucosyltransferase                                    
151.1.13.3.1.1       ___1a8i       alignment  glycogen phosphorylase b biological_unit                    
151.1.14.1.1.1       __1g5qA       alignment  epidermin modifying enzyme epid Mutant lantibiotic epidermin
151.1.14.1.2.1       ____1e20A     alignment  halotolerance protein hal3 (hal3)                           
151.1.15.1.1.1       __1hi9A       alignment  dipeptide transport protein dppa (dciaa)                    
151.1.16.1.1.1       __1f8xA       alignment  nucleoside 2-deoxyribosyltransferase                        
151.1.16.2.1.1       ___1eiwA      alignment  hypothetical protein mth538                                 
151.1.17.1.1.1       __1fyvA       alignment  toll-like receptor 1 fragment                               
151.1.18.1.1.1       __2masA       alignment  inosine-uridine nucleoside n-ribohydrolase (purine nucleosid
151.1.19.1.1.1       __1chd        alignment  cheb methylesterase                                         
151.1.20.1.1.1       __2gar        alignment  glycinamide ribonucleotide transformylase (gartfase) Mutant 
151.1.20.1.2.1       ____1fmtA     alignment  methionyl-trna fmet formyltransferase (10-formyltetrahydrofo
151.1.21.1.1.1       __1jjyA       alignment  carbon monoxide dehydrogenase subunit coos                  
151.1.21.1.2.1       ____1e1dA     alignment  hybrid cluster protein (prismane protein)                   
151.1.22.1.1.1       __1qdlB       alignment  anthranilate synthase (trpe-subunit) fragment anthranilate s
151.1.22.1.2.1       ____1gpmA     alignment  gmp synthetase (xmp aminase)                                
151.1.22.1.3.1       ____1c3oB     alignment  carbamoyl phosphate synthetase ec carbamoyl phosphate synthe
151.1.22.2.1.1       ___1jvnA      alignment  bifunctional histidine biosynthesis protein hishf (imidazole
151.1.23.1.1.1       __1g2iA       alignment  protease i                                                  
151.1.23.1.2.1       ____1cf9A     alignment  catalase hpii Mutant                                        
151.1.24.1.1.1       __1rcf        alignment  Flavodoxin complexed with flavin mononucleotide (fmn)       
151.1.24.1.2.1       ____1bvyF     alignment  cytochrome p450 bm-3 fragment cytochrome p450 bm-3 fragment 
151.1.24.2.1.1       ___5nul       alignment  flavodoxin Mutant biological_unit                           
151.1.24.3.1.1       ___1d4aA      alignment  quinone reductase (dt-diaphorase)                           
151.1.25.1.1.1       __1lbeA       alignment  adp ribosyl cyclase (cyclase, nadase)                       
151.2.1.1.1.1        _1rkd         alignment  ribokinase biological_unit                                  
151.2.1.1.1.2        _____1bx4A    alignment  adenosine kinase biological_unit                            
151.2.1.1.2.1        ____1gc5A     alignment  adp-dependent glucokinase                                   
151.2.1.2.1.1        ___1c3qA      alignment  his tag (thz kinase) hydroxyethylthiazole kinase            
151.2.2.1.1.1        __1e8cA       alignment  udp-n-acetylmuramoylalanyl-d-glutamate--2,6- diaminopimelate
151.2.2.1.2.1        ____1fgs      alignment  folylpolyglutamate synthetase (fpgs) biological_unit        
151.2.2.1.3.1        ____4uagA     alignment  udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase (murd)    
151.2.2.1.4.1        ____1gg4A     alignment  udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- diaminopimelate-d
151.3.1.1.1.1        _1auq         alignment  a1 domain of von willebrand factor fragment                 
151.3.1.1.2.1        ____1atzA     alignment  von willebrand factor fragment                              
151.3.1.1.3.1        ____1ido      alignment  integrin fragment (a-domain)                                
151.3.1.1.4.1        ____1aoxA     alignment  integrin alpha 2 beta fragment                              
151.3.1.2.1.1        ___1jeqB      alignment  atp-dependent DNA helicase ii, 70 kda subunit (ku70) atp-dep
151.3.1.2.2.1        ____1jeqA     alignment  atp-dependent DNA helicase ii, 70 kda subunit (ku70) atp-dep
151.3.1.3.1.1        ___1jv2B      alignment  integrin, alpha v fragment (vitronectin receptor, alpha poly
151.3.2.1.1.1        __1gci        alignment  subtilisin biological_unit                                  
151.3.2.1.2.1        ____1ga1A     alignment  serine-carboxyl proteinase (pscp, pseudomonapepsin, pepstati
151.4.1.1.1.1        _1yacA        alignment  ycac gene product (ycacgp) biological_unit                  
151.4.1.1.2.1        ____1nbaA     alignment  N-carbamoylsarcosine amidohydrolase                         
151.4.2.1.1.1        __1tubA       alignment  tubulin biological_unit                                     
151.4.2.1.2.1        ____1fsz      alignment  ftsz (sulb)                                                 
151.4.3.1.1.1        __1qq5A       alignment  l-2-haloacid dehalogenase                                   
151.4.3.1.2.1        ____1fezA     alignment  phosphonoacetaldehyde hydrolase                             
151.4.3.2.1.1        ___1f5sA      alignment  phosphoserine phosphatase (psp)                             
151.4.4.1.1.1        __1eulA       alignment  calcium-transporting atpase sarcoplasmic reticulum type, fas
151.5.1.1.1.1        _1g8lA        alignment  molybdopterin biosynthesis moea protein                     
151.5.1.2.1.1        ___1di6A      alignment  molybdenum cofactor biosythetic enzyme (moga) Mutant        
151.5.2.1.1.1        __1b74A       alignment  glutamate racemase                                          
151.5.3.1.1.1        __1hrkA       alignment  ferrochelatase fragment (protoheme ferro-lyase, heme synthet
151.5.3.1.1.1        ______1ak1    alignment  ferrochelatase (protoheme ferro-lyase)                      
151.5.3.1.2.1        ____1qgoA     alignment  anaerobic cobalamine biosynthetic cobalt chelatase (cbik pro
151.5.4.1.1.1        __1jfvA       alignment  arsenate reductase (arsenical pump modifier) Mutant         
151.5.4.1.2.1        ____1dg9A     alignment  tyrosine phosphatase                                        
151.5.5.1.1.1        __1j9jA       alignment  stationary phase survival protein                           
151.5.6.1.1.1        __4pgaA       alignment  glutaminase-asparaginase biological_unit                    
151.5.7.1.1.1        __3pfk        alignment  Phosphofructokinase                                         
151.6.1.1.1.1        _1iso         alignment  isocitrate dehydrogenase (oxalosuccinate decarboxylase, idh)
151.6.1.1.1.2        _____1cnzA    alignment  3-isopropylmalate dehydrogenase (ipmdh, imdh) biological_uni
151.6.2.1.1.1        __1brwA       alignment  pyrimidine nucleoside phosphorylase (pynp)                  
151.7.1.1.1.1        _1pauA        alignment  apopain (caspase-3, cpp32, yama) ace-asp-glu-val-asp-cho    
151.7.2.1.1.1        __1cvrA       alignment  gingipain r (rgpb) d-phe-phe-arg-chloromethylketone         
151.8.1.1.1.1        _1c4xA        alignment  2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (bphd) b
151.8.1.1.2.1        ____1brt      alignment  bromoperoxidase a2 (haloperoxidase a2, chloroperoxidase a2) 
151.8.1.1.3.1        ____1ehyA     alignment  soluble epoxide hydrolase biological_unit                   
151.8.1.1.4.1        ____1cr6B     alignment  epoxide hydrolase                                           
151.8.1.1.5.1        ____1bn6A     alignment  haloalkane dehalogenase biological_unit                     
151.8.1.1.6.1        ____1b6g      alignment  haloalkane dehalogenase biological_unit                     
151.8.1.1.7.1        ____1qo7A     alignment  epoxide hydrolase fragment (eh) Mutant                      
151.8.1.1.8.1        ____1qtrA     alignment  prolyl aminopeptidase                                       
151.8.1.1.9.1        ____1hlgA     alignment  lipase, gastric                                             
151.8.1.1.10.1       ____1qj4A     alignment  hydroxynitrile lyase (oxynitrile lyase)                     
151.8.1.1.11.1       ____1ivyA     alignment  human protective protein (protective proteinCATHEPSIN A, car
151.8.1.1.11.2       _____1ac5     alignment  kex1(delta)p                                                
151.8.1.2.1.1        ___1jfrA      alignment  lipase                                                      
151.8.1.2.2.1        ____1auoA     alignment  carboxylesterase biological_unit                            
151.8.1.2.3.1        ____1din      alignment  dienelactone hydrolase (dlh)                                
151.8.1.3.1.1        ___1qlwA      alignment  esterase                                                    
151.8.1.4.1.1        ___1thtA      alignment  Thioesterase                                                
151.8.1.5.1.1        ___1dqyA      alignment  antigen 85-c (85c)                                          
151.8.1.6.1.1        ___1qfmA      alignment  prolyl oligopeptidase (prolyl endopeptidase, post-proline cl
151.8.1.6.2.1        ____1jkmA     alignment  brefeldin a esterase                                        
151.8.1.6.3.1        ____2bce      alignment  cholesterol esterase (bile salt activated lipase, bile salt 
151.8.1.6.3.2        _____1thg     alignment  Lipase triacylglycerol hydrolase                            
151.8.1.7.1.1        ___1tca       alignment  Lipase (triacylglycerol hydrolase)                          
151.8.1.7.2.1        ____1i6wA     alignment  lipase a                                                    
151.8.1.8.1.1        ___1cvl       alignment  triacylglycerol hydrolase                                   
151.8.1.9.1.1        ___1ei9A      alignment  palmitoyl protein thioesterase 1                            
151.8.1.10.1.1       ___1cex       alignment  cutinase                                                    
151.8.1.10.2.1       ____1bs9      alignment  acetyl xylan esterase                                       
151.8.2.1.1.1        __3tgl        alignment  Triacylglycerol acylhydrolase                               
151.8.3.1.1.1        __1d0vA       alignment  nicotinate mononucleotide:5,6- dimethylbenzimidazole phospho
151.9.1.1.1.1        _1ctqA        alignment  transforming protein p21H-RAS-1 fragment                    
151.9.1.1.2.1        ____1byuA     alignment  gtp-binding protein ran fragment (tc4)                      
151.9.1.2.1.1        ___1hurA      alignment  human adp-ribosylation factor 1 (harf1, arf1, marf1)        
151.9.1.3.1.1        ___1efcA      alignment  elongation factor (eftu) biological_unit                    
151.9.1.4.1.1        ___1cipA      alignment  guanine nucleotide-binding protein alpha-1 subunit (gia1, gu
151.9.1.5.1.1        ___1g7rA      alignment  translation initiation factor if2EIF5B fragment             
151.9.1.5.2.1        ____1dar      alignment  elongation factor g (ef-g)                                  
151.9.1.6.1.1        ___1egaA      alignment  gtp-binding protein era biological_unit                     
151.9.2.1.1.1        __1dg3A       alignment  interferon-induced guanylate-binding protein 1 fragment (gua
151.9.3.1.1.1        __1hyqA       alignment  cell division inhibitor (mind-1) (mind)                     
151.9.3.1.2.1        ____1cp2A     alignment  nitrogenase iron protein (cp2) biological_unit              
151.9.3.2.1.1        ___1byi       alignment  dethiobiotin synthase biological_unit                       
151.9.3.3.1.1        ___1ng1       alignment  signal sequence recognition protein ffh fragment (ffh)      
151.9.3.4.1.1        ___1f48A      alignment  arsenite-translocating atpase fragment (arsa atpase)        
151.9.3.5.1.1        ___1eg7A      alignment  formyltetrahydrofolate synthetase                           
151.9.4.1.1.1        __1adeA       alignment  adenylosuccinate synthetase                                 
151.9.5.1.1.1        __1wab        alignment  platelet-activating factor acetylhydrolase (paf-ah)         
151.9.5.2.1.1        ___1esc       alignment  esterase                                                    
151.9.5.3.1.1        ___1deoA      alignment  rhamnogalacturonan acetylesterase                           
151.9.6.1.1.1        __1eesA       alignment  gtp-binding protein fragment (cdc42hs) p21-activated kinase 
151.10.1.1.1.1       _1qhsA        alignment  chloramphenicol phosphotransferase (cpt)                    
151.10.1.2.1.1       ___1zin       alignment  adenylate kinase (adk)                                      
151.10.1.3.1.1       ___1nksA      alignment  adenylate kinase (atp:amp phosphotransferase) biological_uni
151.10.1.4.1.1       ___1shkA      alignment  shikimate kinase biological_unit                            
151.10.1.5.1.1       ___1d6jA      alignment  adenosine-5'phosphosulfate kinase (aps kinase)              
151.10.1.6.1.1       ___1ckeA      alignment  cytidine monophosphate kinase (ck, mssa)                    
151.10.1.7.1.1       ___5tmpA      alignment  thymidylate kinase                                          
151.10.1.7.2.1       ____3tmkA     alignment  thymidylate kinase biological_unit                          
151.10.1.8.1.1       ___1qhiA      alignment  thymidine kinase (tk) biological_unit                       
151.10.1.9.1.1       ___1gky       alignment  Guanylate kinase complex with guanosine monophosphate       
151.10.1.10.1.1      ___1dekA      alignment  deoxynucleoside monophosphate kinase                        
151.10.2.1.1.1       __1esmA       alignment  pantothenate kinase (pank)                                  
151.10.2.2.1.1       ___1a7j       alignment  phosphoribulokinase biological_unit                         
151.10.3.1.1.1       __1nstA       alignment  heparan sulfate n-deacetylaseN-SULFOTRANSFERASE  fragment (n
151.10.3.2.1.1       ___1aquA      alignment  estrogen sulfotransferase (est)                             
151.11.1.1.1.1       _1poxA        alignment  Pyruvate oxidase mutant with pro 178 replaced by ser, ser 18
151.11.1.1.1.2       _____1bfd     alignment  benzoylformate decarboxylase biological_unit                
151.11.1.1.1.3       _____1zpdA    alignment  pyruvate decarboxylase biological_unit                      
151.11.1.2.1.1       ___1trkA      alignment  Transketolase                                               
151.11.1.2.2.1       ____1qs0B     alignment  2-oxoisovalerate dehydrogenase alpha-subunit 2-oxoisovalerat
151.11.1.3.1.1       ___1qs0A      alignment  2-oxoisovalerate dehydrogenase alpha-subunit 2-oxoisovalerat
151.11.2.1.1.1       __1j8fA       alignment  sirtuin 2, isoform 1 (sirt2) sir2-related protein type 2; si
151.11.2.1.2.1       ____1iciA     alignment  transcriptional regulatory protein, sir2 family             
151.11.2.2.1.1       ___1d4oA      alignment  nadp(h) transhydrogenase fragment                           
151.11.2.3.1.1       ___1dhs       alignment  deoxyhypusine synthase                                      
151.11.3.1.1.1       __16pk        alignment  3-phosphoglycerate kinase (pgk) Mutant biological_unit      
151.12.1.1.1.1       _2pgi         alignment  phosphoglucose isomerase (glucose-6-phosphate isomerase) bio
151.12.1.1.1.2       _____1dqrA    alignment  phosphoglucose isomerase                                    
151.12.1.1.2.1       ____1moq      alignment  glucosamine 6-phosphate synthase (l-glutamine:d-fructose-6p 
151.12.2.1.1.1       __1fjfB       alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
151.12.3.1.1.1       __1f2vA       alignment  precorrin-8x methylmutase (cobh)                            
151.13.1.1.1.1       _1fbnA        alignment  mj fibrillarin homologue                                    
151.13.1.1.2.1       ____1ej0A     alignment  ftsj (ftsj methyltransferase)                               
151.13.1.2.1.1       ___1dusA      alignment  mj0882                                                      
151.13.1.3.1.1       ___1vid       alignment  catechol o-methyltransferase (comt)                         
151.13.1.4.1.1       ___1fpxA      alignment  isoflavone-o-methytransferase (iomt)                        
151.13.1.4.2.1       ____1fpqA     alignment  isoliquiritigenin 2'-o-methyltransferase (chalcone o-methylt
151.13.1.5.1.1       ___1xvaA      alignment  glycine n-methyltransferase (gnmt, s-adenosyl-l-methionine b
151.13.1.6.1.1       ___2admA      alignment  adenine-n6-DNA-methyltransferase taqi                       
151.13.1.7.1.1       ___1af7       alignment  chemotaxis receptor methyltransferase cher biological_unit  
151.13.1.8.1.1       ___1i4wA      alignment  mitochondrial replication protein mtf1 (mitochondrial transc
151.13.1.9.1.1       ___2ercA      alignment  rrna methyl transferase fragment (ermc') biological_unit    
151.13.1.10.1.1      ___2dpmA      alignment  adenine-specific methyltransferase dpnii 1 (m.Dpnii 1)      
151.13.1.11.1.1      ___1dl5A      alignment  protein-l-isoaspartate o-methyltransferase                  
151.13.1.12.1.1      ___1g6q2      alignment  hnrnp arginine n-methyltransferase fragment Mutant          
151.13.2.1.1.1       __3mag        alignment  vp39 (poly(a) polymerase regulatory subunit) Mutant biologic
151.13.3.1.1.1       __6mhtA       alignment  cytosine-specific methyltransferase hhai biological_unit DNA
151.13.3.1.2.1       ____1g55A     alignment  DNA cytosine methyltransferase dnmt2 Mutant                 
151.14.1.1.1.1       _1eg2A        alignment  modification methylase rsri (adenine-specific methyltransfer
151.14.1.1.2.1       ____1booA     alignment  n-4 cytosine-specific methyltransferase pvu ii fragment Muta
151.15.1.1.1.1       _1d3vA        alignment  arginase                                                    
151.15.1.2.1.1       ___1c3pA      alignment  hdlp (histone deacetylase-like protein)                     
151.16.1.1.1.1       _1qfjA        alignment  flavin reductase biological_unit                            
151.16.1.1.2.1       ____1fdr      alignment  flavodoxin reductase (ferredoxin reductase) Mutant biologica
151.16.1.1.3.1       ____1fnc      alignment  Ferredoxin:nadp+ oxidoreductase (ferredoxin reductase, flavo
151.16.1.1.4.1       ____1amoA     alignment  nadph-cytochrome p450 reductase fragment (cpr, p450r)       
151.16.1.1.5.1       ____2pia      alignment  Phthalate dioxygenase reductase (e.C.1.18.1.)               
151.16.1.1.6.1       ____1ep2B     alignment  dihydroorotate dehydrogenase b (pyrd subunit) dihydroorotate
151.16.1.1.7.1       ____1ndh      alignment  Cytochrome b=5= reductase                                   
151.16.2.1.1.1       __1i18A       alignment  riboflavin synthase alpha chain fragment                    
151.17.1.1.1.1       _1euhA        alignment  nadp dependent non phosphorylating glyceraldehyde-3-phosphat
151.17.1.1.1.2       _____1bpwA    alignment  aldehyde dehydrogenase (aldh)                               
151.17.1.1.1.3       _____1ad3A    alignment  aldehyde dehydrogenase (class 3) (aldh) biological_unit     
151.17.1.1.1.4       _____1eyyA    alignment  aldehyde dehydrogenase (aldh)                               
151.17.2.1.1.1       __1b7bA       alignment  carbamate kinase                                            
151.18.1.1.1.1       _1gsoA        alignment  glycinamide ribonucleotide synthetase (purd gen product) Mut
151.18.1.1.2.1       ____1bncA     alignment  biotin carboxylase                                          
151.18.1.1.3.1       ____1b6rA     alignment  n5-carboxyaminoimidazole ribonucleotide synthetase (airc, pu
151.18.1.1.4.1       ____1ez1A     alignment  phosphoribosylglycinamide formyltransferase 2               
151.18.1.2.1.1       ___1gsa       alignment  glutathione synthetase (gamma-l-glutamyl-l-cysteine:glycine 
151.18.1.2.2.1       ____1auvA     alignment  synapsin ia fragment                                        
151.18.1.3.1.1       ___1c3oA      alignment  carbamoyl phosphate synthetase ec carbamoyl phosphate synthe
151.18.1.3.2.1       ____1iow      alignment  d-ala:d-ala ligase (dd-ligase, ddlb) Mutant                 
151.18.2.1.1.1       __2hgsA       alignment  glutathione synthetase biological_unit                      
151.19.1.1.1.1       _1g8mA        alignment  aicar transformylase-imp cyclohydrolase fragment (bifunction
151.19.1.2.1.1       ___1b93A      alignment  methylglyoxal synthase                                      
151.20.1.1.1.1       _1qguB        alignment  nitrogenase molybdenum iron protein (nitrogenase component 1
151.20.1.1.2.1       ____1qguA     alignment  nitrogenase molybdenum iron protein (nitrogenase component 1
151.20.1.2.1.1       ___1toaA      alignment  periplasmic binding protein troa fragment (tromp-1) biologic
151.20.2.1.1.1       __1efdN       alignment  ferrichrome-binding periplasmic protein                     
151.21.1.1.1.1       _1nhp         alignment  Nadh peroxidase (npx) mutant with cys 42 replaced by ala (c4
151.21.1.1.1.2       _____1d7yA    alignment  ferredoxin reductase                                        
151.21.1.1.2.1       ____3grs      alignment  Glutathione reductase , oxidized form (e)                   
151.21.1.1.2.1       ______1lvl    alignment  Dihydrolipoamide dehydrogenase complex with nicotinamide-ade
151.21.1.1.3.1       ____1fcdA     alignment  Flavocytochrome c sulfide dehydrogenase (fcsd)              
151.21.1.1.4.1       ____1trb      alignment  Thioredoxin reductase mutant with cys 138 replaced by ser (c
151.21.1.1.4.1       ______1hyuA   alignment  alkyl hydroperoxide reductase subunit f (ahpf)              
151.21.1.1.5.1       ____1cjcA     alignment  adrenodoxin reductase (adr, nadph                           
151.21.1.2.1.1       ___1qlaA      alignment  fumarate reductase flavoprotein subunit fumarate reductase i
151.21.1.2.1.2       _____1chuA    alignment  l-aspartate oxidase biological_unit                         
151.21.1.2.2.1       ____1qjdA     alignment  flavocytochrome c3                                          
151.21.1.3.1.1       ___1gpeA      alignment  glucose oxidase biological_unit                             
151.21.1.3.2.1       ____1b8sA     alignment  cholesterol oxidase Mutant                                  
151.21.1.4.1.1       ___1b3mA      alignment  monomeric sarcosine oxidase                                 
151.21.1.4.2.1       ____1an9A     alignment  d-amino acid oxidase biological_unit                        
151.21.1.4.3.1       ____1pbe      alignment  P-hydroxybenzoate hydroxylase (phbh) complexed with p-hydrox
151.21.1.4.3.2       _____1fohA    alignment  phenol hydroxylase biological_unit                          
151.21.1.5.1.1       ___1gnd       alignment  guanine nucleotide dissociation inhibitor                   
151.21.1.6.1.1       ___1f8rA      alignment  l-amino acid oxidase                                        
151.21.1.6.2.1       ____1b37B     alignment  polyamine oxidase fragment                                  
151.21.1.6.3.1       ____1i8tA     alignment  udp-galactopyranose mutase                                  
152.1.1.1.1.1        1elqA         alignment  l-cysteineL-CYSTINE C-S LYASE fragment Mutant               
152.1.1.1.1.2        _____1c0nA    alignment  csdb protein                                                
152.1.1.1.1.3        _____1ecxA    alignment  aminotransferase                                            
152.1.1.1.2.1        ____1bj4A     alignment  serine hydroxymethyltransferase                             
152.1.1.1.3.1        ____1jg8A     alignment  l-allo-threonine aldolase                                   
152.1.1.1.4.1        ____1ax4A     alignment  tryptophanase (tryptophan indole-lyase) biological_unit     
152.1.1.1.5.1        ____1bw0A     alignment  tyrosine aminotransferase (tat)                             
152.1.1.1.5.2        _____1bjwA    alignment  aspartate aminotransferase biological_unit                  
152.1.1.1.5.3        _____1b8gA    alignment  1-aminocyclopropane-1-carboxylate synthase (acc synthase, s-
152.1.1.1.5.4        _____1d2fA    alignment  maly protein                                                
152.1.1.1.5.4        ______1gewA   alignment  histidinol-phosphate aminotransferase                       
152.1.1.1.6.1        ____1ajsA     alignment  aspartate aminotransferase biological_unit                  
152.1.1.1.7.1        ____2dkb      alignment  2,2-dialkylglycine decarboxylase (pyruvate) (dgd)           
152.1.1.1.7.2        _____1dtyA    alignment  adenosylmethionine-8-amino-7-oxononanoate aminotransferase  
152.1.1.1.7.3        _____2gsaA    alignment  glutamate semialdehyde aminotransferase (glutamate semialdeh
152.1.1.1.7.4        _____1gtxA    alignment  4-aminobutyrate aminotransferase (gaba-at)                  
152.1.1.1.8.1        ____1bs0A     alignment  8-amino-7-oxonanoate synthase (aons, 8-amino-7-ketopelargona
152.1.1.1.9.1        ____1ibjA     alignment  cystathionine beta-lyase (cbl)                              
152.1.1.1.9.2        _____1cl2A    alignment  cystathionine beta-lyase (beta cystathionase) biological_uni
152.1.1.1.10.1       ____1b9hA     alignment  3-amino-5-hydroxybenzoic acid synthase (ahba synthase) biolo
152.1.1.1.11.1       ____1bjnA     alignment  phosphoserine aminotransferase (psat) biological_unit       
152.1.1.2.1.1        ___1ordA      alignment  ornithine decarboxylase                                     
152.2.1.1.1.1        _1a3c         alignment  pyrimidine operon regulatory protein pyrr (pyrr) biological_
152.2.1.1.2.1        ____1tc1A     alignment  hypoxanthine phosphoribosyltransferase biological_unit      
152.2.1.2.1.1        ___1qk3A      alignment  hypoxanthine-guanine phosphoribosyltransferase (hgprtase)   
152.2.1.3.1.1        ___1dqnA      alignment  guanine phosphoribosyltransferase                           
152.2.1.4.1.1        ___1nulA      alignment  xanthine-guanine phosphoribosyltransferase (xprt) biological
152.2.1.5.1.1        ___1qb7A      alignment  adenine phosphoribosyltransferase (aprt) biological_unit    
152.2.1.6.1.1        ___1bd3A      alignment  uracil phosphoribosyltransferase (uprtase) Mutant biological
152.2.1.7.1.1        ___1opr       alignment  orotate phosphoribosyltransferase (oprtase)                 
152.2.1.8.1.1        ___1dkuA      alignment  phosphoribosyl pyrophosphate synthetase (ribose-phosphate py
152.2.2.1.1.1        __1dn1A       alignment  syntaxin binding protein 1 (nsec1) syntaxin 1a fragment     
152.3.1.1.1.1        _1lci         alignment  luciferase                                                  
152.3.1.1.1.2        _____1amuA    alignment  gramicidin synthetase 1 fragment (grsa) biological_unit phen
153.1.1.1.1.1        1poiB         alignment  glutaconate coenzyme a-transferase biological_unit          
153.1.2.1.1.1        __1poiA       alignment  glutaconate coenzyme a-transferase biological_unit          
153.1.3.1.1.1        __1deaA       alignment  glucosamine 6-phosphate deaminase                           
153.2.1.1.1.1        _2frvA        alignment  periplasmic hydrogenase (cytochrome-c3 hydrogenase) biologic
154.1.1.1.1.1        1amp          alignment  Aminopeptidase (aeromonas proteolytica)                     
154.1.1.1.2.1        ____1xjo      alignment  aminopeptidase (sgap)                                       
154.1.1.1.3.1        ____1cx8B     alignment  transferrin receptor protein fragment                       
154.1.1.1.4.1        ____1cg2A     alignment  carboxypeptidase g2 biological_unit                         
154.1.1.2.1.1        ___1lam       alignment  leucine aminopeptidase (cytosolic aminopeptidase)           
154.1.1.3.1.1        ___1qmuA      alignment  carboxypeptidase gp180 residues 503-882 fragment            
154.1.1.3.1.2        _____1aye     alignment  procarboxypeptidase a2 (pcpa2) biological_unit              
154.1.2.1.1.1        __1cb0A       alignment  5'-deoxy-5'-methylthioadenosine phosphorylase (mta phosphory
154.1.2.1.2.1        ____1b8oA     alignment  purine nucleoside phosphorylase                             
154.1.2.1.3.1        ____1k3fA     alignment  uridine phosphorylase (upase, udrpase)                      
154.1.2.1.4.1        ____1ecpA     alignment  purine nucleoside phosphorylase                             
154.1.2.2.1.1        ___1a2zA      alignment  pyrrolidone carboxyl peptidase (pyroglutamyl aminopeptidase)
154.1.3.1.1.1        __2pth        alignment  peptidyl-trna hydrolase biological_unit                     
154.1.3.2.1.1        ___1cfzA      alignment  hydrogenase 2 maturation protease                           
154.1.3.3.1.1        ___1c8bA      alignment  spore protease (germination protease)                       
154.2.1.1.1.1        _1bouB        alignment  4,5-dioxygenase alpha chain (liga) biological_unit 4,5-dioxy
154.3.1.1.1.1        _3eugA        alignment  glycosylase (udg, ung) Mutant biological_unit               
154.3.2.1.1.1        __1mugA       alignment  g:tU SPECIFIC DNA GLYCOSYLASE                               
155.1.1.1.1.1        1ecl          alignment  escherichia coli topoisomerase i (escherichia coli omega pro
155.1.1.1.2.1        ____1d6mA     alignment  DNA topoisomerase iii                                       
155.1.2.1.1.1        __1dd9A       alignment  DNA primase fragment (dnag)                                 
155.1.3.1.1.1        __1d3yA       alignment  DNA topoisomerase vi a subunit fragment Mutant              
155.1.4.1.1.1        __1ddzA       alignment  carbonic anhydrase                                          
155.1.4.1.2.1        ____1ekjB     alignment  beta-carbonic anhydrase                                     
155.1.4.2.1.1        ___1g5cA      alignment  beta-carbonic anhydrase                                     
155.2.1.1.1.1        _1ad2         alignment  ribosomal protein l1 (tl2) Mutant                           
155.2.1.2.1.1        ___1cjsA      alignment  50s ribosomal protein l1p                                   
155.2.2.1.1.1        __1pdo        alignment  mannose permease fragment (mannose transporter, iiab subunit
155.3.1.1.1.1        _1rhs         alignment  sulfur-substituted rhodanese biological_unit                
155.3.1.1.2.1        ____1e0cA     alignment  sulfurtransferase (rhodanese)                               
155.3.1.2.1.1        ___1c25       alignment  cdc25a fragment (m-phase inducer phosphatase 1) Mutant      
156.1.1.1.1.1        1a7tA         alignment  metallo-beta-lactamase (class b beta-lactamase) Mutant      
156.1.1.1.2.1        ____1e5dA     alignment  rubredoxin:oxygen oxidoreductase                            
156.1.1.1.3.1        ____1smlA     alignment  penicillinase biological_unit                               
156.1.1.1.4.1        ____1qh5A     alignment  hydroxyacylglutathione hydrolase (glyoxalase ii)            
157.1.1.1.1.1        1gaxA         alignment  valyl-trna synthetase (valrs) trna(val)                     
157.1.1.1.1.1        ______1ile    alignment  isoleucyl-trna synthetase (ilers) biological_unit           
157.1.1.1.2.1        ____1qu2A     alignment  isoleucyl-trna synthetase (isoleucine--trna ligase, ilers) i
157.1.1.1.3.1        ____1qqtA     alignment  methionyl-trna synthetase fragment                          
157.1.1.1.3.1        ______1a8h    alignment  methionyl-trna synthetase (metrs) biological_unit           
157.1.1.1.4.1        ____1bs2A     alignment  arginyl-trna synthetase (argrs, arginine - trna ligase) biol
157.1.1.2.1.1        ___1gtrA      alignment  Glutaminyl-trna synthetase complexed with trna and atp (-8 d
157.1.1.2.2.1        ____1gln      alignment  glutamyl-trna synthetase                                    
157.1.2.1.1.1        __2ts1        alignment  Tyrosyl-transfer RNA synthetase                             
157.1.2.2.1.1        ___1d2rB      alignment  tryptophanyl trna synthetase (trprs)                        
157.1.3.1.1.1        __1f9aA       alignment  hypothetical protein mj0541 fragment                        
157.1.3.1.2.1        ____1b6tA     alignment  phosphopantetheine adenylyltransferase (ppat, kdtb)         
157.1.3.2.1.1        ___1cozA      alignment  glycerol-3-phosphate cytidylyltransferase biological_unit   
157.1.4.1.1.1        __1ihoA       alignment  pantoate--beta-alanine ligase (pantothenate synthetase, pant
157.1.4.2.1.1        ___1g8fA      alignment  sulfate adenylyltransferase (atp-sulfurylase, sat)          
157.1.5.1.1.1        __1qnf        alignment  photolyase (DNA cyclobutane dipyrimidine photolyase)        
157.1.5.2.1.1        ___1mjhA      alignment  atp-binding domain of protein mj0577 fragment               
157.1.6.1.1.1        __1efvB       alignment  electron transfer flavoprotein (etf, hetf, electron transfer
157.1.6.1.2.1        ____1efvA     alignment  electron transfer flavoprotein (etf, hetf, electron transfer
157.2.1.1.1.1        _2nsyA        alignment  nad synthetase                                              
157.2.1.2.1.1        ___1sur       alignment  paps reductase (phosphoadenosine phosphosulfate reductase) b
157.3.1.1.1.1        _1tfr         alignment  t4 rnase h (t4 5u to 3u exonuclease)                        
157.3.1.1.2.1        ____1exnA     alignment  5'-exonuclease (5'-nuclease) 5'-3' exonuclease;   Mutant    
157.3.1.2.1.1        ___1a76       alignment  flap endonuclease-1 protein                                 
158.1.1.1.1.1        1ig3A         alignment  thiamin pyrophosphokinase                                   
158.1.1.1.2.1        ____1ig0A     alignment  thiamin pyrophosphokinase                                   
159.1.1.1.1.1        1fwyA         alignment  udp-n-acetylglucosamine pyrophosphorylase fragment (n-acetyl
159.1.1.1.2.1        ____1g0rA     alignment  glucose-1-phosphate thymidylyltransferase (glucose-1-phospha
159.1.1.1.3.1        ____1i52A     alignment  4-diphosphocytidyl-2-c-methylerythritol synthase            
159.1.1.1.4.1        ____1h7eA     alignment  3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo syn
159.1.1.1.5.1        ____1eyrA     alignment  cmp-n-acetylneuraminic acid synthetase (acylneuraminate cyti
159.1.1.1.6.1        ____1fr9A     alignment  molybdopterin-guanine dinucleotide biosynthesis protein (mob
159.1.1.2.1.1        ___1qg8A      alignment  spore coat polysaccharide biosynthesis protein spsa         
159.1.1.3.1.1        ___1fggA      alignment  glucuronyltransferase i                                     
159.1.1.4.1.1        ___1foaA      alignment  alpha-1,3-mannosyl-glycoprotein beta-1,2-n- acetylglucosamin
159.1.1.5.1.1        ___1ga8A      alignment  galactosyl transferase lgtc Mutant                          
159.1.1.6.1.1        ___1g8oA      alignment  n-acetyllactosaminide alpha-1,3- galactosyltransferase fragm
159.1.2.1.1.1        __1fgxA       alignment  beta 1,4 galactosyltransferase fragment (beta4galt1)        
160.1.1.1.1.1        1e79G         alignment  atp synthase alpha chain heart isoform (bovine mitochondrial
160.1.1.1.2.1        ____1fs0G     alignment  atp synthase epsilon subunit atp synthase gamma subunit     
160.2.1.1.1.1        _1e1qG        alignment  bovine mitochondrial f1-atpase (atp synthase alpha chain hea
161.1.1.1.1.1        2reb          alignment  Reca protein                                                
161.1.1.1.2.1        ____1cr1A     alignment  DNA primaseHELICASE fragment                                
161.1.1.2.1.1        ___1g8yA      alignment  regulatory protein repa (replication protein a)             
161.1.1.3.1.1        ___1skyE      alignment  f1-atpase (f1-atp synthase)                                 
161.1.1.3.1.2        _____1skyB    alignment  f1-atpase (f1-atp synthase)                                 
161.1.1.4.1.1        ___1g5rA      alignment  cob(i)alamin adenosyltransferase (corrinoid adenosyltransfer
161.1.1.5.1.1        ___1c9kB      alignment  adenosylcobinamide kinase (cobu)                            
161.1.2.1.1.1        __1g6oA       alignment  cag-alpha (traffic atpase)                                  
161.1.3.1.1.1        __1iqpA       alignment  rfcs (replication factor c small subunit precursor)         
161.1.3.2.1.1        ___1a5t       alignment  delta prime (holb) biological_unit                          
161.1.3.3.1.1        ___1hqcA      alignment  ruvb                                                        
161.1.3.4.1.1        ___1fnnA      alignment  cell division control protein 6 (cdc6p)                     
161.1.3.5.1.1        ___1d2nA      alignment  n-ethylmaleimide-sensitive fusion protein fragment          
161.1.3.6.1.1        ___1do0A      alignment  heat shock locus u                                          
161.1.3.7.1.1        ___1g8pA      alignment  magnesium-chelatase 38 kda subunit fragment (mg-protoporphyr
161.1.4.1.1.1        __1d2mA       alignment  excinuclease abc subunit b (uvrb)                           
161.1.4.1.2.1        ____1gm5A     alignment  recg DNA (5'-(CpApGpCpTpCpCpApTpGpApTp* cpApTpTpGpGpCpA)-3')
161.1.4.2.1.1        ___1heiA      alignment  hcv helicase                                                
161.1.4.3.1.1        ___1qvaA      alignment  initiation factor 4a fragment (eif-4a, stimulator factor i 3
161.1.4.3.1.1        ______1hv8A   alignment  putative atp-dependent RNA helicase mj0669 (dead box helicas
161.1.4.3.2.1        ____1fukA     alignment  eukaryotic initiation factor 4a fragment (yeast initiation f
161.1.4.4.1.1        ___1pjr       alignment  pcra                                                        
161.1.5.1.1.1        __1gajA       alignment  high-affinity branched chain amino acid transport atp-bindin
161.1.5.1.2.1        ____1b0uA     alignment  histidine permease fragment (abc transporter, hisp)         
161.1.5.1.3.1        ____1jj7A     alignment  peptide transporter tap1 fragment                           
161.1.5.1.4.1        ____1g291     alignment  maltose transport protein malk (malk)                       
161.1.5.2.1.1        ___1e69B      alignment  chromosome segregation smc protein fragment                 
161.1.6.1.1.1        __1f2tB       alignment  rad50 abc-atpase fragment rad50 abc-atpase fragment         
161.1.7.1.1.1        __1ewqA       alignment  DNA mismatch repair protein muts (taq muts subunit a) DNA (5
162.1.1.1.1.1        2rslA         alignment  Gamma delta resolvase (large fragment, catalytic domain)    
162.2.1.1.1.1        _1fyeA        alignment  aspartyl dipeptidase                                        
163.1.1.1.1.1        1imoA         alignment  DNA ligase iii fragment (polydeoxyribonucleotide synthase [a
163.1.2.1.1.1        __1cdzA       alignment  DNA-repair protein xrcc1 fragment                           
164.1.1.1.1.1        1jb1A         alignment  hprk protein fragment                                       
164.1.2.1.1.1        __1ayl        alignment  phosphoenolpyruvate carboxykinase (atp-oxaloacetate carboxy-
165.1.1.1.1.1        1f75A         alignment  undecaprenyl pyrophosphate synthetase Mutant                
166.1.1.1.1.1        1pii          alignment  N-(5'phosphoribosyl)anthranilate isomerase complex with indo
166.1.1.1.1.2        _____1a53     alignment  indole-3-glycerolphosphate synthase (igps) biological_unit  
166.1.1.1.2.1        ____1nsj      alignment  phosphoribosyl anthranilate isomerase (prai)                
166.1.1.1.3.1        ____1ho1A     alignment  pyridoxine 5'-phosphate synthase (pyridoxal phosphate biosyn
166.1.1.1.4.1        ____1rpxA     alignment  ribulose-phosphate 3-epimerase biological_unit              
166.1.1.1.5.1        ____2tpsA     alignment  thiamin phosphate synthase biological_unit                  
166.1.1.1.6.1        ____1fwrA     alignment  kdpg aldolase Mutant                                        
166.1.1.1.7.1        ____2tysA     alignment  tryptophan synthase Mutant biological_unit                  
166.1.1.2.1.1        ___1thfD      alignment  hisf protein fragment (imidazoleglycerol phosphate synthase 
166.1.1.2.2.1        ____1qo2A     alignment  n-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxam
166.1.1.3.1.1        ___1hg3A      alignment  triosephosphate isomerase                                   
166.1.1.3.2.1        ____1amk      alignment  triose phosphate isomerase biological_unit                  
166.1.1.4.1.1        ___1dvjA      alignment  orotidine 5'-phosphate decarboxylase (ompdecase) Mutant     
166.1.1.4.2.1        ____1dbtA     alignment  orotidine 5'-phosphate decarboxylase                        
166.1.1.4.3.1        ____1dqwA     alignment  orotidine 5'-phosphate decarboxylase Mutant                 
166.1.1.5.1.1        ___1nal3      alignment  n-acetylneuraminate lyase                                   
166.1.1.5.1.1        ______1dhpA   alignment  dihydrodipicolinate synthase (dhdps) Mutant                 
166.1.1.6.1.1        ___1burA      alignment  ribulose 1,5-bisphosphate carboxylaseOXYGENASE (rubisco) bio
166.1.1.7.1.1        ___1pymA      alignment  phosphoenolpyruvate mutase (phosphoenolpyruvate phosphomutas
166.1.1.7.2.1        ____1dquA     alignment  isocitrate lyase                                            
166.1.1.8.1.1        ___1b4kA      alignment  5-aminolevulinic acid dehydratase (porphobilinogen synthase)
166.1.1.9.1.1        ___1qfeA      alignment  3-dehydroquinate dehydratase (3-dehydroquinase)             
166.1.1.10.1.1       ___1lucA      alignment  bacterial luciferase                                        
166.1.1.10.2.1       ____1ezwA     alignment  coenzyme f420-dependent n5,N10- methylenetetrahydromethanopt
166.1.1.11.1.1       ___1b5tA      alignment  methylenetetrahydrofolate reductase                         
166.1.1.12.1.1       ___2dorA      alignment  dihydroorotate dehydrogenase a biological_unit              
166.1.1.12.1.2       _____1d3gA    alignment  dihydroorotate dehydrogenase                                
166.1.1.12.2.1       ____1h7wA     alignment  dihydropyrimidine dehydrogenase (dihydrouracil dehydrogenase
166.1.1.12.3.1       ____1gox      alignment  Glycolate oxidase                                           
166.1.1.12.4.1       ____1ak5      alignment  inosine-5'-monophosphate dehydrogenase (impdh) biological_un
166.1.1.13.1.1       ___1oyc       alignment  Old yellow enzyme (reduced) (oye)                           
166.1.1.13.1.2       _____2tmdA    alignment  Trimethylamine dehydrogenase                                
166.1.1.14.1.1       ___1uroA      alignment  uroporphyrinogen decarboxylase (uro-d, urod)                
166.1.1.15.1.1       ___1dxeA      alignment  2-dehydro-3-deoxy-galactarate aldolase                      
166.1.1.15.2.1       ____1a49A     alignment  pyruvate kinase biological_unit                             
166.1.1.15.3.1       ____1dik      alignment  pyruvate phosphate dikinase (ppdk) biological_unit          
166.1.1.16.1.1       ___1d8cA      alignment  malate synthase g Mutant                                    
166.1.1.17.1.1       ___1f6yA      alignment  5-methyltetrahydrofolate corrinoidIRON SULFUR protein methyl
166.1.1.17.2.1       ____1aj2      alignment  dihydropteroate synthase (dhps) biological_unit             
166.1.1.18.1.1       ___1qr7A      alignment  phenylalanine-regulated 3-deoxy-d-arabino- heptulosonate-7-p
166.1.1.18.2.1       ____1d9eA     alignment  3-deoxy-d-manno-octulosonate 8-phosphate synthase           
166.1.1.19.1.1       ___1reqB      alignment  methylmalonyl-coa mutase                                    
166.1.1.19.1.2       _____1reqA    alignment  methylmalonyl-coa mutase                                    
166.1.1.19.2.1       ____1cb7B     alignment  glutamate mutase glutamate mutase                           
166.1.1.20.1.1       ___1pud       alignment  trna-guanine transglycosylase (tgt)                         
166.1.1.21.1.1       ___1qrqA      alignment  kv beta2 protein fragment                                   
166.1.1.21.2.1       ____1frb      alignment  fr-1 protein                                                
166.1.1.22.1.1       ___1fbaA      alignment  Fructose-1,6-bisphosphate aldolase                          
166.1.1.23.1.1       ___1dosA      alignment  aldolase class ii                                           
166.1.1.24.1.1       ___7a3hA      alignment  endoglucanase fragment (cel5a, cellulase) biological_unit   
166.1.1.24.2.1       ____1bqcA     alignment  beta-mannanase                                              
166.1.1.24.3.1       ____1eceA     alignment  endocellulase e1 fragment (endo-1,4-beta-d-glucanase)       
166.1.1.24.4.1       ____1edg      alignment  endoglucanase a fragment (endo-(1,4)-beta-glucanase, celcca)
166.1.1.24.5.1       ____1ceo      alignment  cellulase celc (1,4-beta-d-glucan-glucanohydrolase, endo-1,4
166.1.1.24.6.1       ____1qnoA     alignment  endo-1,4-b-d-mannanase fragment                             
166.1.1.24.7.1       ____1cz1A     alignment  exo-b-(1,3)-glucanase                                       
166.1.1.24.8.1       ____1qvbA     alignment  beta-glycosidase                                            
166.1.1.24.8.2       _____1e70M    alignment  myrosinase (thioglucoside glucohydrolase)                   
166.1.1.24.9.1       ____1taxA     alignment  endo-1,4-beta-xylanase                                      
166.1.1.24.10.1      ____1bhgA     alignment  beta-glucuronidase (gus gene product) biological_unit       
166.1.1.24.11.1      ____1bglA     alignment  beta-galactosidase                                          
166.1.1.25.1.1       ___1aq0A      alignment  1,3-1,4-beta-glucanase (1,3-1,4-beta-d-glucan 4-glucanohydro
166.1.1.26.1.1       ___1byb       alignment  Beta-amylase reacted with 200 mm maltose and complexed with 
166.1.1.26.1.2       _____1b9zA    alignment  beta-amylase                                                
166.1.1.27.1.1       ___1j9yA      alignment  mannanase a (glycoside hydrolase family 26)                 
166.1.1.28.1.1       ___1d2kA      alignment  chitinase 1 fragment                                        
166.1.1.28.1.2       _____1ctn     alignment  Chitinase a (ph 5.5, 4 degrees c)                           
166.1.1.28.1.3       _____1e9lA    alignment  ym1 secretory protein                                       
166.1.1.28.1.4       _____1e15A    alignment  chitinase b fragment                                        
166.1.1.28.2.1       ____1nar      alignment  Narbonin                                                    
166.1.1.28.3.1       ____1cnv      alignment  concanavalin b                                              
166.1.1.28.4.1       ____1eokA     alignment  endo-beta-n-acetylglucosaminidase f3                        
166.1.1.28.5.1       ____2ebn      alignment  Endo-beta-n-acetylglucosaminidase f1 (endoglycosidase f1, en
166.1.1.29.1.1       ___1qba       alignment  chitobiase (beta-n-acetylhexosaminidase, n-acetyl-beta-d-glu
166.1.1.29.1.2       _____1hp4A    alignment  beta-n-acetylhexosaminidase                                 
166.1.1.30.1.1       ___4xis       alignment  Xylose isomerase complex with xylose and mnCl2              
166.1.1.30.1.2       _____1a0cA    alignment  xylose isomerase (glucose isomerase) biological_unit        
166.1.1.30.2.1       ____1de5A     alignment  l-rhamnose isomerase                                        
166.1.1.30.3.1       ____1qumA     alignment  endonuclease iv 5'-d(CpGpTpCpC)-3' 5'-d((3dr)pCpGpApCpGpA)-3
166.1.1.31.1.1       ___1fcqA      alignment  hyaluronoglucosaminidase (hyaluronidase, api m ii)          
166.1.1.32.1.1       ___1uok       alignment  oligo-1,6-glucosidase                                       
166.1.1.32.1.2       _____1bvzA    alignment  alpha-amylase ii fragment                                   
166.1.1.32.1.3       _____7taa     alignment  taka amylase                                                
166.1.1.32.2.1       ____1cxlA     alignment  cyclodextrin-glycosyltransferase (cgtase) Mutant biological_
166.1.1.32.3.1       ____1ehaA     alignment  glycosyltrehalose trehalohydrolase (trehalohydrolase, gthase
166.1.1.32.4.1       ____1jdc      alignment  1,4-alpha maltotetrahydrolase (maltotetraose-forming exo-amy
166.1.1.32.4.2       _____1bli     alignment  alpha-amylase (glucanotransferase, alpha-1,4-glucan-4-glucan
166.1.1.32.5.1       ____1smd      alignment  amylase                                                     
166.1.1.32.5.2       _____1bag     alignment  alpha-1,4-glucan-4-glucanohydrolase (alpha-amylase) Mutant  
166.1.1.32.6.1       ____1gjuA     alignment  maltodextrin glycosyltransferase                            
166.1.1.32.7.1       ____1bf2      alignment  isoamylase (glycogen 6-glucanohydrolase)                    
166.1.1.32.8.1       ____1cwyA     alignment  amylomaltase fragment                                       
166.1.1.33.1.1       ___1onrA      alignment  transaldolase b                                             
166.1.1.34.1.1       ___1dioA      alignment  diol dehydratase diol dehydratase diol dehydratase          
166.1.2.1.1.1        __1mucA       alignment  muconate lactonizing enzyme (cic, cis muconate cycloisomeras
166.1.2.1.1.2        _____1bqg     alignment  d-glucarate dehydratase biological_unit                     
166.1.2.1.1.3        _____2mnr     alignment  Mandelate racemase                                          
166.1.2.1.2.1        ____1fhuA     alignment  o-succinylbenzoate synthase                                 
166.1.2.1.3.1        ____4enl      alignment  Enolase (2-phospho-D-glycerate hydrolase) (holo)            
166.1.3.1.1.1        __1ct5A       alignment  yeast hypothetical protein, selenomet                       
166.1.3.1.2.1        ____1bd0A     alignment  alanine racemase biological_unit                            
166.1.3.1.3.1        ____7odcA     alignment  ornithine decarboxylase (odc, modc, modc') Mutant           
166.1.4.1.1.1        __1ex1A       alignment  beta-d-glucan exohydrolase isoenzyme exo1 (exo1, exoglucanas
166.1.5.1.1.1        __1tml        alignment  Endo-1,4-beta-d-glucanase                                   
166.1.5.1.2.1        ____1bvwA     alignment  cellobiohydrolase ii fragment (cellulase, cel6a) biological_
166.1.6.1.1.1        __1qpoA       alignment  quinolinate acid phosphoribosyl transferase (nicotinate-nucl
166.1.7.1.1.1        __1j79A       alignment  dihydroorotase (dhoase)                                     
166.1.7.1.2.1        ____1ubpC     alignment  urease (urea aminohydrolase) urease (urea aminohydrolase) ur
166.1.7.2.1.1        ___1pscA      alignment  phosphotriesterase                                          
166.1.7.3.1.1        ___1a4mA      alignment  adenosine deaminase (ada)                                   
166.1.8.1.1.1        __1jfxA       alignment  1,4-beta-n-acetylmuramidase m1 (beta-1,4-n,6-o-diacetylmuram
166.1.9.1.1.1        __2plc        alignment  phosphatidylinositol-specific phospholipase c (pi-plc) biolo
166.2.1.1.1.1        _1nfp         alignment  Luxf gene product (nonfluorescent flavoprotein) complexed wi
166.3.1.1.1.1        _1cm5A        alignment  pyruvate formate-lyase (pfl) Mutant                         
166.3.1.1.2.1        ____1b8bA     alignment  anaerobic ribonucleotide-triphosphate reductase large chain 
166.3.1.2.1.1        ___1rlr       alignment  ribonucleotide reductase protein r1 (ribonucleoside diphosph
167.1.1.1.1.1        1nzyA         alignment  4-chlorobenzoyl coenzyme a dehalogenase (dehalogenase)      
167.1.1.1.2.1        ____1dciA     alignment  dienoyl-coa isomerase (delta3,5,Delta2,4-dienoyl-coenzyme a 
167.1.1.1.3.1        ____1ef8A     alignment  methylmalonyl coa decarboxylase                             
167.1.1.1.4.1        ____1hnoA     alignment  d3,D2-enoyl coa isomerase eci1                              
167.1.1.2.1.1        ___1tyfA      alignment  clp peptidase (clpp)                                        
167.1.1.3.1.1        ___1fc6A      alignment  photosystem ii d1 protease fragment (d1 c-terminal processin
167.1.2.1.1.1        __1auz        alignment  spoiiaa                                                     
168.1.1.1.1.1        1uteA         alignment  ii purple acid phosphatase (uteroferrin, trap, pap, tartrate
168.1.1.1.2.1        ____4kbpA     alignment  purple acid phosphatase                                     
168.1.1.2.1.1        ___1ii7A      alignment  mre11 nuclease                                              
168.1.1.3.1.1        ___1ush       alignment  5'-nucleotidase (udp-sugar hydrolase) biological_unit       
168.1.2.1.1.1        __1g5bA       alignment  serineTHREONINE PROTEIN PHOSPHATASE                         
168.1.2.1.2.1        ____1auiA     alignment  serineTHREONINE PHOSPHATASE 2B (calcineurin)                
168.2.1.1.1.1        _1bix         alignment  ap endonuclease 1 biological_unit                           
168.2.1.1.1.1        ______1ako    alignment  exonuclease iii biological_unit                             
168.2.1.1.2.1        ____3dni      alignment  Deoxyribonuclease i (dnase i)                               
168.2.1.2.1.1        ___1i9yA      alignment  phosphatidylinositol phosphate phosphatase fragment (synapto
168.3.1.1.1.1        _1fit         alignment  fragile histidine protein (fhit, fragile histidine triad pro
168.3.1.2.1.1        ___1kpf       alignment  protein kinase c interacting protein (pkci-1, protein kinase
168.3.2.1.1.1        __1guqA       alignment  galactose-1-phosphate uridylyltransferase Mutant            
168.3.3.1.1.1        __1f89A       alignment  hypothetical 32.5 kda protein ylr351c (ylr351c, l9638.5)    
168.3.3.1.1.2        _____1emsA    alignment  nit-fragile histidine triad fusion protein (nitfhit)        
168.3.3.1.2.1        ____1erzA     alignment  n-carbamyl-d-amino acid amidohydrolase                      
169.1.1.1.1.1        2shpA         alignment  shp-2 (syp, shptp-2) Mutant                                 
169.1.1.1.1.2        _____1larA    alignment  lar fragment Mutant                                         
169.1.1.1.1.2        ______1pty    alignment  protein tyrosine phosphatase 1b (ptp1b) Mutant              
169.1.1.1.2.1        ____1ytw      alignment  yersinia protein tyrosine phosphatase fragment (yop51, yop2b
169.1.1.1.3.1        ____1g4uS     alignment  protein tyrosine phosphatase sptp fragment ras-related c3 bo
169.1.1.2.1.1        ___1fpzA      alignment  cyclin-dependent kinase inhibitor 3 Mutant                  
169.1.1.2.2.1        ____1d5rA     alignment  phosphoinositide phosphotase pten fragment Mutant           
169.1.1.3.1.1        ___1vhrA      alignment  human vh1-related dual-specificity phosphatase vhr (vhr)    
169.1.1.4.1.1        ___1i9sA      alignment  mrna capping enzyme fragment (mce1)                         
169.1.2.1.1.1        __1cbf        alignment  cobalt-precorrin-4 transmethylase (precorrin-4 methylase, cb
170.1.1.1.1.1        1bg2          alignment  kinesin fragment                                            
170.1.2.1.1.1        __1lvk        alignment  myosin fragment Mutant                                      
170.2.1.1.1.1        _1whtB        alignment  Serine carboxypeptidase ii complexed with l-benzylsuccinate 
171.1.1.1.1.1        1lba          alignment  Lysozyme mutant with ala 6 replaced by lys and residues 2 - 
172.1.1.1.1.1        3dfr          alignment  Dihydrofolate reductase complex with nadph and methotrexate 
172.1.1.1.2.1        ____1vdrA     alignment  dihydrofolate reductase (dhfr)                              
172.1.1.1.3.1        ____1d1gA     alignment  dihydrofolate reductase                                     
172.1.1.1.4.1        ____1aoeA     alignment  dihydrofolate reductase (dhfr) biological_unit              
172.2.1.1.1.1        _1ble         alignment  fructose permease (fructose transporter, iib subunit)       
173.1.1.1.1.1        1ejjA         alignment  phosphoglycerate mutase                                     
173.1.1.1.2.1        ____1b8jA     alignment  alkaline phosphatase biological_unit                        
173.1.1.1.3.1        ____1auk      alignment  arylsulfatase a (cerebroside-3-sulfate-sulfatase)           
174.1.1.1.1.1        1dklA         alignment  phytase (ph 2.5 acid phosphatase)                           
174.1.1.1.2.1        ____1cviA     alignment  prostatic acid phosphatase                                  
174.1.1.1.3.1        ____1qfxA     alignment  ph 2.5 acid phosphatase                                     
174.1.1.1.3.2        _____1ihp     alignment  phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase)  
174.1.1.2.1.1        ___1qhfA      alignment  phosphoglycerate mutase                                     
174.1.1.2.2.1        ____1bif      alignment  6-phosphofructo-2-kinase fructose-2,6-bisphosphatase Mutant 
175.1.1.1.1.1        1fiuA         alignment  type ii restriction enzyme ngomi (ngomiv restriction endonuc
175.1.1.2.1.1        ___1cfr       alignment  restriction endonuclease fragment (cfr10i)                  
175.1.1.3.1.1        ___1dc1A      alignment  bsobi restriction endonuclease (type ii restriction enzyme, 
175.1.2.1.1.1        __1d02A       alignment  type ii restriction enzyme muni (endonuclease muni) Mutant D
175.1.3.1.1.1        __1ckqA       alignment  endonuclease biological_unit DNA (5'-d(TpCpGpCpGpApApTpTpCpG
175.2.1.1.1.1        _1d2iA        alignment  DNA (5'- d(TpApTpTpApTpApGpApTpCpTpApTpApA)-3') restriction 
175.2.1.2.1.1        ___1bam       alignment  Restriction endonuclease bamhi                              
175.3.1.1.1.1        _1vsrA        alignment  vsr endonuclease fragment (patch repair protein,DNA mismatch
175.3.2.1.1.1        __1f1zA       alignment  tnsa endonuclease (transposase)                             
175.3.3.1.1.1        __1gefA       alignment  holliday junction resolvase                                 
175.3.4.1.1.1        __1a79A       alignment  trna endonuclease                                           
175.4.1.1.1.1        _1avqA        alignment  lambda exonuclease (red alpha) Mutant biological_unit       
176.1.1.1.1.1        1ev7B         alignment  type iie restriction endonuclease naei                      
176.1.2.1.1.1        __1dmuA       alignment  bgli restriction endonuclease DNA (5'- d(ApTpCpGpCpCpTpApApT
176.1.3.1.1.1        __1rvaA       alignment  Eco rv endonuclease complexed with substrate DNA            
176.2.1.1.1.1        _1azo         alignment  muth (DNA mismatch repair protein muth)                     
176.2.2.1.1.1        __3pviA       alignment  pvuii endonuclease Mutant DNA (5'-d(TpGpApCpCpApGpCpTpGpGpTp
177.1.1.1.1.1        1eikA         alignment  RNA polymerase subunit rpb5                                 
177.1.2.1.1.1        __1dzfA       alignment  DNA-directed RNA polymerases i, ii, and iii 27 kd polypeptid
178.1.1.1.1.1        1oasA         alignment  o-acetylserine sulfhydrylase (cystein synthase)             
178.1.1.1.1.1        ______1tdj    alignment  biosynthetic threonine deaminase (threonine dehydratase) bio
178.1.1.1.2.1        ____2tysB     alignment  tryptophan synthase Mutant biological_unit                  
178.1.1.1.3.1        ____1f2dA     alignment  1-aminocyclopropane-1-carboxylate deaminase                 
178.1.1.1.4.1        ____1e5xA     alignment  threonine synthase                                          
179.1.1.1.1.1        1ihnA         alignment  hypothetical protein mth938                                 
180.1.1.1.1.1        1dd8A         alignment  beta-ketoacyl [acyl carrier protein] synthase i             
180.1.1.1.2.1        ____1afwA     alignment  3-ketoacetyl-coa thiolase biological_unit                   
180.1.1.1.3.1        ____1hn9A     alignment  beta-ketoacyl-acyl carrier protein synthase iii (3-oxoacyl-[
180.1.1.1.3.2        _____1bi5A    alignment  chalcone synthase (chs) biological_unit                     
181.1.1.1.1.1        1dmgA         alignment  ribosomal protein l4                                        
181.1.1.2.1.1        ___1ffkC      alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
182.1.1.1.1.1        1hfc          alignment  Fibroblast collagenase                                      
182.1.1.1.2.1        ____1ck7A     alignment  gelatinase a fragment (mmp-2,72kd type iv collagenase) Mutan
182.1.1.2.1.1        ___1sat       alignment  Molecule (serralysin, major metallo protease from serratia m
182.1.1.3.1.1        ___1kuh       alignment  zinc protease (neutral protease)                            
182.1.1.4.1.1        ___1iae       alignment  Astacin with zinc replaced by nickel(ii)                    
182.1.1.5.1.1        ___1bkcA      alignment  tumor necrosis factor-alpha-converting enzyme (tace) Mutant 
182.1.1.5.2.1        ____1atlA     alignment  atrolysin c (hemorrhagic toxin c, form d)                   
182.1.2.1.1.1        __1lml        alignment  leishmanolysin (gp63 protein, psp)                          
182.2.1.1.1.1        _1dmtA        alignment  neutral endopeptidase fragment (neprilysin, nep, enkephalina
182.2.2.1.1.1        __1ge5A       alignment  peptidyl-lys metalloendopeptidase                           
183.1.1.1.1.1        1f82A         alignment  botulinum neurotoxin type b fragment                        
184.1.1.1.1.1        1hs6A         alignment  leukotriene a-4 hydrolase                                   
184.1.1.2.1.1        ___1hyt       alignment  Thermolysin complexed with benzylsuccinic acid (2(s)-benzyl-
184.2.1.1.1.1        _1g7dA        alignment  endoplasmic reticulum protein erp29 fragment                
185.1.1.1.1.1        1huxA         alignment  activator of (r)-2-hydroxyglutaryl-coa dehydratase          
185.1.1.1.2.1        ____1glcG     alignment  Glycerol kinase complexed with the (escherichia coli) glucos
185.1.1.2.1.1        ___1yagA      alignment  actin gelsolin fragment (actin-depolymerizing factor (adf)) 
185.1.1.2.2.1        ____1e4fT     alignment  cell division protein ftsa                                  
185.1.1.3.1.1        ___2yhx       alignment  Yeast hexokinase b complex with ortho-toluoylglucosamine    
185.1.1.3.1.2        _____1qhaA    alignment  hexokinase                                                  
185.1.1.4.1.1        ___1g99A      alignment  acetate kinase                                              
185.1.2.1.1.1        __1jceA       alignment  rod shape-determining protein mreb                          
185.1.2.1.2.1        ____1ba1      alignment  heat-shock cognate 70kd protein fragment Mutant             
185.1.3.1.1.1        __1hjrA       alignment  Holliday junction resolvase (ruvc)                          
185.2.1.1.1.1        _1ffkK        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
185.2.1.2.1.1        ___1fjfK      alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
185.3.1.1.1.1        _1cxqA        alignment  avian sarcoma virus integrase fragment Mutant               
185.3.1.2.1.1        ___1b9dA      alignment  integrase fragment Mutant                                   
185.3.1.3.1.1        ___1bco       alignment  bacteriophage mu transposase (mua domain ii)                
185.3.2.1.1.1        __1b7eA       alignment  transposase inhibitor protein from tn5                      
185.3.3.1.1.1        __2rn2        alignment  Ribonuclease h                                              
185.3.4.1.1.1        __1ekeA       alignment  ribonuclease hii                                            
186.1.1.1.1.1        1ck9A         alignment  60s ribosomal protein l30 (rl30_yeast) biological_unit      
186.1.1.2.1.1        ___1ffkE      alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
186.1.2.1.1.1        __1dt9A       alignment  eukaryotic peptide chain release factor subunit 1 (erf1)    
187.1.1.1.1.1        1qu9A         alignment  yjgf protein                                                
187.1.2.1.1.1        __2chsA       alignment  Chorismate mutase                                           
187.1.3.1.1.1        __1cliA       alignment  phosphoribosyl-aminoimidazole synthetase                    
187.2.1.1.1.1        _1ctt         alignment  Cytidine deaminase (cda) complexed with 3,4-dihydrozebularin
188.1.1.1.1.1        1hf2A         alignment  septum site-determining protein minc (minc)                 
189.1.1.1.1.1        1sbp          alignment  Sulfate-binding protein                                     
189.1.1.1.2.1        ____1mrp      alignment  ferric iron binding protein (fbp, hita, hfbp, major iron reg
189.1.1.1.3.1        ____1pot      alignment  spermidinePUTRESCINE-BINDING PROTEIN (potd)                 
189.1.1.1.4.1        ____4mbp      alignment  maltodextrin binding protein                                
189.1.1.1.4.2        _____1eu8A    alignment  trehaloseMALTOSE BINDING PROTEIN                            
189.1.1.1.5.1        ____2thiA     alignment  thiaminase i                                                
189.1.1.2.1.1        ___1wod       alignment  moda fragment                                               
189.1.1.2.2.1        ____1atg      alignment  periplasmic molybdate-binding protein (moda)                
189.1.1.2.3.1        ____1ixh      alignment  phosphate-binding protein biological_unit                   
189.1.1.3.1.1        ___1i69A      alignment  hydrogen peroxide-inducible genes activator fragment (oxyr) 
189.1.1.3.2.1        ____1al3      alignment  cys regulon transcriptional activator cysb fragment         
189.1.1.4.1.1        ___1ii5A      alignment  hypothetical protein slr1257 fragment                       
189.1.1.4.2.1        ____1lst      alignment  Lysine-, arginine-, ornithine-binding protein (lao) complexe
189.1.1.4.3.1        ____1gr2A     alignment  glutamate receptor 2 fragment (glur-b, glur-2)              
189.1.1.5.1.1        ___1pda       alignment  Porphobilinogen deaminase                                   
189.1.1.6.1.1        ___1nnt       alignment  Ovotransferrin (monoferric n-terminal half-molecule)        
189.1.1.6.2.1        ____1cb6A     alignment  lactoferrin biological_unit                                 
189.1.2.1.1.1        __1jevA       alignment  oligo-peptide binding protein (oppa) peptide lys trp lys    
189.1.2.1.2.1        ____1dpe      alignment  dipeptide-binding protein (dipeptide permease)              
189.2.1.1.1.1        _1imbA        alignment  Inositol monophosphatase complexed with gadolinium and l-myo
189.2.1.1.2.1        ____1dk4A     alignment  inositol monophosphatase                                    
189.2.1.1.3.1        ____1qgxA     alignment  3',5'-adenosine bisphosphatase (pap phosphatase)            
189.2.1.1.4.1        ____1jp4A     alignment  3'(2'),5'-bisphosphate nucleotidase (pipase                 
189.2.1.1.5.1        ____1inp      alignment  Inositol polyphosphate 1-phosphatase (1-ptase) (inositol-1,4
189.2.1.1.6.1        ____1frpA     alignment  Fructose-1,6-bisphosphatase (d-fructose-1,6-bisphosphate 1-p
190.1.1.1.1.1        1c24A         alignment  methionine aminopeptidase Mutant                            
190.1.1.1.2.1        ____1bn5      alignment  methionine aminopeptidase biological_unit                   
190.1.1.1.3.1        ____1chmA     alignment  Creatine amidinohydrolase                                   
190.1.1.1.3.2        _____1az9     alignment  aminopeptidase p (ampp) biological_unit                     
191.1.1.1.1.1        2pil          alignment  type 4 pilin (fimbriae) biological_unit                     
191.1.1.2.1.1        ___1dzoA      alignment  type iv pilin fragment Mutant                               
191.1.2.1.1.1        __1hpwA       alignment  fimbrial protein fragment (pilin)                           
192.1.1.1.1.1        1ffkG         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
193.1.1.1.1.1        1fm2B         alignment  glutaryl 7-aminocephalosporanic acid acylase fragment (cepha
193.1.1.1.2.1        ____1ajqB     alignment  penicillin amidohydrolase (penicillin acylase) biological_un
193.1.1.2.1.1        ___3pvaA      alignment  penicillin v acylase (penicillin v amidase)                 
193.1.1.3.1.1        ___1pmaP      alignment  proteasome (prosome, multicatalytic protease, mcp, macropain
193.1.1.3.2.1        ____1pmaA     alignment  proteasome (prosome, multicatalytic protease, mcp, macropain
193.1.1.3.3.1        ____1nedA     alignment  hslv                                                        
193.2.1.1.1.1        _1apyB        alignment  aspartylglucosaminidase (aga, glycosylasparaginase)         
193.3.1.1.1.1        _1gdoA        alignment  glucosamine 6-phosphate synthase fragment (l-glutamine:d-fru
193.3.1.1.2.1        ____1ecfB     alignment  glutamine phosphoribosylpyrophosphate amidotransferase      
193.3.1.1.3.1        ____1ct9A     alignment  asparagine synthetase b Mutant                              
193.3.2.1.1.1        __1a6q        alignment  phosphatase 2c                                              
194.1.1.1.1.1        1dhn          alignment  7,8-dihydroneopterin aldolase (dhna)                        
194.1.1.2.1.1        ___1b9lA      alignment  epimerase                                                   
194.1.1.3.1.1        ___1a8rA      alignment  gtp cyclohydrolase i Mutant biological_unit                 
194.1.2.1.1.1        __1b66A       alignment  6-pyruvoyl tetrahydropterin synthase                        
194.1.3.1.1.1        __1uox        alignment  urate oxidase (uricase) biological_unit                     
195.1.1.1.1.1        1apyA         alignment  aspartylglucosaminidase (aga, glycosylasparaginase)         
196.1.1.1.1.1        1cbn          alignment  Crambin                                                     
197.1.1.1.1.1        1pauB         alignment  apopain (caspase-3, cpp32, yama) ace-asp-glu-val-asp-cho    
198.1.1.1.1.1        1rmg          alignment  rhamnogalacturonase a (rgase a)                             
198.1.1.1.1.2        _____1bhe     alignment  polygalacturonase (peha) biological_unit                    
198.1.1.1.1.3        _____1czfA    alignment  polygalacturonase ii (pg-ii, pectinase, endopolygalacturonas
198.1.1.1.2.1        ____1dbgA     alignment  chondroitinase b                                            
198.1.1.1.3.1        ____1tyv      alignment  tailspike protein fragment (tailspike endorhamnosidase)     
198.1.1.1.4.1        ____1qcxA     alignment  pectin lyase b                                              
198.1.1.1.4.2        _____1pcl     alignment  Pectate lyase e (pele)                                      
198.1.1.1.5.1        ____1air      alignment  pectate lyase c (pelc)                                      
198.1.1.2.1.1        ___1qjvA      alignment  pectin methylesterase fragment (pectinesterase)             
198.1.1.2.2.1        ____1dabA     alignment  p.69 pertactin                                              
198.1.1.3.1.1        ___1ee6A      alignment  pectate lyase                                               
198.1.2.1.1.1        __1qreA       alignment  carbonic anhydrase                                          
198.1.2.2.1.1        ___1lxa       alignment  udp n-acetylglucosamine o-acyltransferase (lpxa) Mutant     
198.1.2.3.1.1        ___3tdt       alignment  tetrahydrodipicolinate n-succinyltransferase (dapd) biologic
198.1.2.4.1.1        ___2xat       alignment  xenobiotic acetyltransferase biological_unit                
198.2.1.1.1.1        _1a4yA        alignment  ribonuclease inhibitor angiogenin                           
198.2.1.1.2.1        ____1yrgA     alignment  gtpase-activating protein rna1_schpo (rna1p) rangap; gtpase-
198.2.1.1.3.1        ____1fqvA     alignment  skp2 fragment (cyclin aCDK2-ASSOCIATED PROTEIN P45) skp1 (cy
198.2.1.2.1.1        ___1jl5A      alignment  outer protein yopm                                          
198.2.1.2.2.1        ____1d0bA     alignment  internalin b fragment                                       
198.2.1.3.1.1        ___1a9nA      alignment  u2 RNA hairpin iv fragment u2 a' fragment Mutant u2 b'' frag
198.2.1.3.2.1        ____1dceA     alignment  rab geranylgeranyltransferase alpha subunit rab geranylgeran
198.2.1.4.1.1        ___1fo1A      alignment  nuclear RNA export factor 1 fragment (tap (nfx1))           
198.2.2.1.1.1        __1ds9A       alignment  outer arm dynein fragment                                   
198.2.3.1.1.1        __1igrA       alignment  insulin-like growth factor receptor 1 fragment              
198.3.1.1.1.1        _1ezgA        alignment  thermal hysteresis protein isoform yl-1                     
199.1.1.1.1.1        1ewwA         alignment  antifreeze protein                                          
200.1.1.1.1.1        1qoxN         alignment  beta-glucosidase                                            
201.1.1.1.1.1        1prtF         alignment  Pertussis toxin                                             
201.1.1.2.1.1        ___1bcpD      alignment  pertussis toxin                                             
201.1.1.3.1.1        ___1bcpB      alignment  pertussis toxin                                             
201.1.1.4.1.1        ___3chbD      alignment  cholera toxin fragment Mutant biological_unit               
201.1.1.5.1.1        ___1tiiD      alignment  heat labile enterotoxin type iib (lt-iib)                   
201.1.2.1.1.1        __2bosA       alignment  shiga-like toxin iie b subunit fragment (verocytotoxin) Muta
201.1.3.1.1.1        __1quqA       alignment  replication protein a 32 kd subunit fragment replication pro
201.1.3.2.1.1        ___1quqB      alignment  replication protein a 32 kd subunit fragment replication pro
201.1.3.3.1.1        ___1otcA      alignment  telomere-binding protein alpha subunit (alpha subunit) biolo
201.1.3.4.1.1        ___1jmcA      alignment  replication protein a fragment (humrpa70kd, hrpa1) single st
201.1.4.1.1.1        __3ullA       alignment  DNA binding protein                                         
201.1.5.1.1.1        __1jc7A       alignment  agrin fragment                                              
201.1.5.2.1.1        ___1br9       alignment  metalloproteinase-2 inhibitor (timp-2, tissue inhibitor of m
201.1.6.1.1.1        __1krs        alignment  lysyl-trna synthetase (product of lyss gene)                
201.2.1.1.1.1        _1h9jA        alignment  molybdenum-binding-protein (modg)                           
201.2.1.1.2.1        ____1b9mA     alignment  mode                                                        
201.2.1.2.1.1        ___1fr3A      alignment  molybdateTUNGSTATE BINDING PROTEIN (mop)                    
201.2.2.1.1.1        __3seb        alignment  staphylococcal enterotoxin b (seb)                          
201.2.2.1.2.1        ____1an8      alignment  streptococcal pyrogenic exotoxin c (spe-c) biological_unit  
201.2.2.1.3.1        ____1aw7A     alignment  toxic shock syndrome toxin-1 (tsst-1) Mutant biological_unit
201.3.1.1.1.1        _1ewiA        alignment  replication protein a fragment (rpa70)                      
201.4.1.1.1.1        _1je5A        alignment  helix-destabilizing protein (gp2.5, single-stranded DNA-bind
201.5.1.1.1.1        _1mjc         alignment  Major cold shock protein 7.4 (cspa (cs 7.4)) of (escherichia
201.5.2.1.1.1        __1bkb        alignment  translation initiation factor 5a Mutant                     
201.5.3.1.1.1        __1hh2P       alignment  n utilization substance protein a (nusa)                    
201.5.4.1.1.1        __1sro        alignment  pnpase fragment (polyribonucleotide nucleotidyltransferase, 
201.5.5.1.1.1        __1jt8A       alignment  probable translation initiation factor 1a (eif-1a)          
201.6.1.1.1.1        _1fjfQ        alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
201.6.2.1.1.1        __1fjfL       alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
201.6.3.1.1.1        __1gd7A       alignment  csaa protein                                                
201.6.3.2.1.1        ___1eujA      alignment  endothelial monocyte activating polypeptide 2 (emap 2)      
201.7.1.1.1.1        _1d7qA        alignment  n-terminal histidine tag translation initiation factor 1a   
201.7.2.1.1.1        __1ah9        alignment  initiation factor 1 (if1)                                   
202.1.1.1.1.1        1snc          alignment  Staphylococcal nuclease complex with a calcium ion and 3-pri
203.1.1.1.1.1        1fviA         alignment  chlorella virus DNA ligase-adenylate Mutant                 
203.1.1.1.2.1        ____1a0i      alignment  DNA ligase Mutant                                           
203.1.1.2.1.1        ___1ckmA      alignment  mrna capping enzyme (RNA guanylyltransferase)               
203.1.1.3.1.1        ___1dgsA      alignment  DNA ligase                                                  
203.1.1.3.2.1        ____1b04A     alignment  DNA ligase fragment Mutant                                  
203.2.1.1.1.1        _1rboC        alignment  ribulose bisphosphate carboxylaseOXYGENASE (rubisco) biologi
204.1.1.1.1.1        1otcB         alignment  telomere-binding protein alpha subunit (alpha subunit) biolo
205.1.1.1.1.1        1pfsA         alignment  pf3 single-stranded DNA binding protein (pf3 ssdbp) Mutant  
205.1.2.1.1.1        __1gvp        alignment  gene v protein biological_unit                              
205.2.1.1.1.1        _1gpc         alignment  core gp32 (gp32Iii)                                         
206.1.1.1.1.1        1c0aA         alignment  aspartyl trna synthetase (aspartate-trna ligase, asprs) aspa
206.1.1.1.1.1        ______1b8aA   alignment  aspartyl-trna synthetase (aspartyl trna ligase)             
206.1.1.1.2.1        ____1lylA     alignment  lysyl-trna synthetase (lysu) lysine                         
206.1.1.1.3.1        ____12asA     alignment  asparagine synthetase (l-aspartate:ammonia ligase (amp-formi
206.1.1.2.1.1        ___1pysB      alignment  phenylalanyl-trna synthetase biological_unit                
206.1.1.2.2.1        ____1pysA     alignment  phenylalanyl-trna synthetase biological_unit                
206.1.1.3.1.1        ___1g5hA      alignment  mitochondrial DNA polymerase accessory subunit              
206.1.1.3.1.1        ______1atiA   alignment  glycyl-trna synthetase (glycine-trna ligase)                
206.1.1.3.2.1        ____1qf6A     alignment  threonyl-trna synthetase (thrrs) threonine trna (trna (thr))
206.1.1.3.3.1        ____1hc7A     alignment  prolyl-trna synthetase (prolyl-trna ligase)                 
206.1.1.3.4.1        ____1sesA     alignment  Seryl-trna synthetase (serine-trna ligase) complexed with se
206.1.1.3.5.1        ____1adjA     alignment  histidyl-trna synthetase biological_unit histidine          
207.1.1.1.1.1        1ex2A         alignment  protein maf                                                 
207.1.1.2.1.1        ___1b78A      alignment  pyrophosphatase                                             
207.1.2.1.1.1        __1dioB       alignment  diol dehydratase diol dehydratase diol dehydratase          
208.1.1.1.1.1        2prd          alignment  pyrophosphate phosphohydrolase                              
208.1.1.1.2.1        ____1wgjA     alignment  inorganic pyrophosphatase (ppase) biological_unit           
209.1.1.1.1.1        1jeiA         alignment  emerin fragment                                             
209.2.1.1.1.1        _1h9fA        alignment  thymopoietin fragment (lamina-associated polypeptide 2)     
210.1.1.1.1.1        1en7A         alignment  recombination endonuclease vii (protein gp49)               
210.1.2.1.1.1        __1a62        alignment  rho fragment                                                
211.1.1.1.1.1        1iioA         alignment  conserved hypothetical protein mth865                       
212.1.1.1.1.1        1afp          alignment  Antifungal protein from aspergillus giganteus (agafp) (NMR, 
213.1.1.1.1.1        1dz1A         alignment  modifier 1 protein fragment (m31, hp1 beta, momod1, heteroch
213.1.2.1.1.1        __1e0bA       alignment  swi6 protein fragment                                       
213.1.3.1.1.1        __1ap0        alignment  modifier protein 1 fragment (momod1, heterochromatin protein
213.2.1.1.1.1        _1g6zA        alignment  clr4 protein fragment                                       
213.3.1.1.1.1        _1azpA        alignment  sac7d (7 kd hyperthermophile DNA-binding protein) DNA       
213.4.1.1.1.1        _1b3aA        alignment  rantes                                                      
213.4.1.1.1.1        ______1dokA   alignment  monocyte chemoattractant protein 1 (mcp-1, mcaf) Mutant     
213.4.1.1.1.1        ______1tvxA   alignment  neutrophil activating peptide 2 variant (nap-2) Mutant      
213.4.2.1.1.1        __1a15A       alignment  stromal derived factor-1alpha (sdf-1) Mutant                
214.1.1.1.1.1        3ezmA         alignment  cyanovirin-n                                                
215.1.1.1.1.1        1g5vA         alignment  survival motor neuron protein 1 fragment                    
215.1.2.1.1.1        __1vie        alignment  dihydrofolate reductase (r67 dhfr)                          
215.1.3.1.1.1        __1pse        alignment  Photosystem i accessory protein e (psae) (subunit e) (wild t
215.1.4.1.1.1        __1dj7B       alignment  ferredoxin thioredoxin reductase ferredoxin thioredoxin redu
215.1.5.1.1.1        __2ahjB       alignment  nitrile hydratase (nhase) biological_unit                   
215.1.6.1.1.1        __1ffkN       alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
215.2.1.1.1.1        _1ffkQ        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
215.3.1.1.1.1        _1rl2A        alignment  ribosomal protein l2 Mutant biological_unit                 
215.4.1.1.1.1        _3vub         alignment  ccdb biological_unit                                        
215.5.1.1.1.1        _1bbzA        alignment  abl tyrosine kinase fragment peptide p41                    
215.5.1.1.1.1        ______1ckaA   alignment  C-crk (n-terminal sh3 domain) (c-crksh3-n) complexed with c3
215.5.1.2.1.1        ___1gcpA      alignment  vav proto-oncogene fragment                                 
215.5.2.1.1.1        __1bb9        alignment  amphiphysin 2 fragment                                      
215.5.3.1.1.1        __1i1jA       alignment  melanoma derived growth regulatory protein (melanoma inhibit
215.5.4.1.1.1        __1tud        alignment  alpha-spectrin fragment Mutant                              
215.6.1.1.1.1        _1tuc         alignment  alpha-spectrin fragment Mutant                              
215.7.1.1.1.1        _1ihvA        alignment  hiv-1 integrase                                             
216.1.1.1.1.1        1lckA         alignment  p56==lck== tyrosine kinase Mutant tail phosphopeptide tegq(p
216.1.1.1.2.1        ____1a81A     alignment  syk kinase fragment t-cell surface glycoprotein cd3 epsilon 
216.1.1.2.1.1        ___1d4tA      alignment  t cell signal transduction molecule sap fragment signaling l
216.1.1.3.1.1        ___1griA      alignment  growth factor bound protein 2                               
216.1.1.4.1.1        ___1qadA      alignment  pi3-kinase p85 alpha subunit fragment                       
216.1.1.5.1.1        ___2cblA      alignment  proto-oncogene cbl fragment zap-70 fragment                 
216.2.1.1.1.1        _1i74A        alignment  probable manganese-dependent inorganic pyrophosphatase (pyro
217.1.1.1.1.1        1i8fA         alignment  putative snrnp sm-like protein                              
217.1.1.2.1.1        ___1d3bA      alignment  small nuclear ribonucleoprotein sm d3 fragment (d3 core snrn
217.1.1.3.1.1        ___1d3bB      alignment  small nuclear ribonucleoprotein sm d3 fragment (d3 core snrn
217.1.1.4.1.1        ___1b34B      alignment  small nuclear ribonucleoprotein sm d1 small nuclear ribonucl
217.2.1.1.1.1        _1ytfC        alignment  yeast tata-box binding protein fragment (ytbp) yeast transcr
217.2.2.1.1.1        __1ytfD       alignment  yeast tata-box binding protein fragment (ytbp) yeast transcr
218.1.1.1.1.1        6prcH         alignment  photosynthetic reaction center                              
218.2.1.1.1.1        _1whi         alignment  ribosomal protein l14                                       
219.1.1.1.1.1        1iknD         alignment  nf-kappa-b p65 subunit fragment (p65) nf-kappa-b p50d subuni
219.1.1.2.1.1        ___1bd8       alignment  p19ink4d cdk46 INHIBITOR                                    
219.1.1.3.1.1        ___1sw6A      alignment  regulatory protein swi6 fragment                            
219.1.1.4.1.1        ___1dcqA      alignment  pyk2-associated protein beta fragment                       
219.1.1.5.1.1        ___1ycsB      alignment  p53 fragment 53bp2 fragment (p53bp2)                        
219.1.1.6.1.1        ___2myo       alignment  myotrophin                                                  
220.1.1.1.1.1        1b12A         alignment  signal peptidase i fragment (spase i, leader peptidase i)   
220.1.2.1.1.1        __1umuA       alignment  umud' fragment Mutant                                       
221.1.1.1.1.1        1aojA         alignment  eps8 fragment (src homology domain) biological_unit         
222.1.1.1.1.1        1cdkA         alignment  camp-dependent protein kinase (protein kinase a) protein kin
222.1.1.1.2.1        ____1ia8A     alignment  chk1 checkpoint kinase fragment                             
222.1.1.1.3.1        ____1hcl      alignment  human cyclin-dependent kinase 2 (cdk2)                      
222.1.1.1.4.1        ____1a6o      alignment  protein kinase ck2ALPHA-SUBUNIT                             
222.1.1.1.5.1        ____1tkiA     alignment  titin fragment                                              
222.1.1.1.6.1        ____1csn      alignment  casein kinase-1                                             
222.1.1.1.7.1        ____1fgkA     alignment  fgf receptor 1 fragment (fgfr1k, fibroblast growth factor re
222.1.1.1.8.1        ____1fmk      alignment  tyrosine-protein kinase src fragment (c-src, p60-src)       
222.1.1.1.9.1        ____1b6cB     alignment  fk506-binding protein (fkbp12) tgf-b superfamily receptor ty
222.1.2.1.1.1        __1j7iA       alignment  aminoglycoside 3'-phosphotransferase (aph(3')iii)           
222.1.3.1.1.1        __1cjaA       alignment  actin-fragmin kinase fragment                               
222.1.4.1.1.1        __1ia9A       alignment  transient receptor potential-related protein fragment (trp-r
222.1.5.1.1.1        __1bo1A       alignment  phosphatidylinositol phosphate kinase iibeta (pipk)         
222.2.1.1.1.1        _1a48         alignment  phosphoribosylaminoimidazole-succinocarboxamide synthase (sa
223.1.1.1.1.1        1ijaA         alignment  sortase fragment                                            
224.1.1.1.1.1        1ee8A         alignment  mutm (fpg) protein                                          
225.1.1.1.1.1        1cz4A         alignment  vcp-like atpase fragment                                    
225.1.1.1.2.1        ____1e32A     alignment  p97 fragment                                                
225.1.1.2.1.1        ___1cr5A      alignment  sec18p (residues 22 - 210) fragment                         
225.1.1.2.2.1        ____1qcsA     alignment  n-ethylmaleimide sensitive factor (nsf-n) fragment          
225.1.2.1.1.1        __2napA       alignment  periplasmic nitrate reductase biological_unit               
225.1.2.1.2.1        ____1g8jA     alignment  arsenite oxidase fragment arsenite oxidase fragment         
225.1.2.1.3.1        ____1dmr      alignment  dmso reductase biological_unit                              
225.1.3.1.1.1        __1aw8B       alignment  l-aspartate-alpha-decarboxylase biological_unit             
225.1.4.1.1.1        __1bw4        alignment  Barwin, basic barley seed protein (NMR, 20 structures)      
225.2.1.1.1.1        _2eng         alignment  endoglucanase v                                             
226.1.1.1.1.1        1d1nA         alignment  initiation factor 2 fragment                                
226.2.1.1.1.1        _1ffkB        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
227.1.1.1.1.1        2er7E         alignment  Endothia aspartic proteinase (endothiapepsin) complex with h
227.1.1.1.1.2        _____2rmpA    alignment  mucoropepsin (mucor rennin, rhiomucor miehei aspartic protei
227.1.1.1.1.3        _____1eagA    alignment  aspartic proteinase (sap2 gene product) (sap2, candidapepsin
227.1.1.1.1.3        ______1smrA   alignment  Renin complex with the inhibitor ch-66                      
227.1.1.1.1.4        _____1fknA    alignment  memapsin 2 fragment (beta-secretase) peptide inhibitor om99-
227.1.2.1.1.1        __1fmb        alignment  eiav protease Mutant                                        
227.1.2.2.1.1        ___2rspB      alignment  Rous sarcoma virus protease (RSV PR)                        
227.1.2.3.1.1        ___1hvc       alignment  Hiv-1 protease (tethered dimer linked by gly-gly-ser-ser-gly
227.1.3.1.1.1        __1lywA       alignment  cathepsin d                                                 
227.2.1.1.1.1        _1b5fB        alignment  cardosin a cardosin a                                       
228.1.1.1.1.1        5ptp          alignment  beta trypsin                                                
228.1.1.1.1.1        ______1a7s    alignment  heparin binding protein (cap37, azurocidin) biological_unit 
228.1.1.1.2.1        ____1dleA     alignment  complement factor b fragment                                
228.1.1.1.3.1        ____1agjA     alignment  epidermolytic toxin a                                       
228.1.1.1.4.1        ____1arb      alignment  Achromobacter protease i                                    
228.1.1.2.1.1        ___1havA      alignment  hepatitis a virus 3c proteinase (picornain 3c) Mutant       
228.1.1.2.2.1        ____1cqqA     alignment  type 2 rhinovirus 3c protease                               
228.1.1.3.1.1        ___1qq4A      alignment  alpha-lytic protease fragment Mutant                        
228.1.1.4.1.1        ___2hrvA      alignment  2a cysteine proteinase (picornavirus endopeptidase 2a)      
228.1.1.5.1.1        ___1jxpA      alignment  ns3 serine protease (hydrolase) ns4a (structural protein ns4
228.1.1.5.2.1        ____1befA     alignment  dengue virus ns3 serine protease fragment (ns3-pro)         
228.1.1.6.1.1        ___1svpA      alignment  sindbis virus capsid protein fragment (sindbis virus coat pr
228.1.2.1.1.1        __2pkaA       alignment  Kallikrein a                                                
228.1.2.2.1.1        ___1ucyH      alignment  thrombin fibrinopeptide a-alpha fragment                    
228.2.1.1.1.1        _1ucyE        alignment  thrombin fibrinopeptide a-alpha fragment                    
228.3.1.1.1.1        _1axj         alignment  fmn-binding protein biological_unit                         
228.3.1.2.1.1        ___1ci0A      alignment  pnp oxidase biological_unit                                 
228.3.2.1.1.1        __1i0rA       alignment  conserved hypothetical protein (ferric reductase)           
228.3.2.1.2.1        ____1ejeA     alignment  fmn-binding protein                                         
229.1.1.1.1.1        1h5pA         alignment  nuclear autoantigen sp100-b fragment (sand domain, kdwk doma
230.1.1.1.1.1        4sgbI         alignment  Serine proteinase b complex with the potato inhibitor PCI-1 
231.1.1.1.1.1        8fabA         alignment  Fab fragment from human immunoglobulin igg1 (lambda, hil)   
231.1.1.1.2.1        ____1bec      alignment  14.3.D t cell antigen receptor Mutant                       
231.1.1.1.3.1        ____1mfa      alignment  Fv fragment (murine se155-4) complex with the trisaccharide 
231.1.1.1.4.1        ____1gc1H     alignment  envelope protein gp120 fragment Mutant cd4 fragment Mutant a
231.1.1.1.5.1        ____1hxmD     alignment  gamma-delta t-cell receptor (t-cell receptor delta chain) ga
231.1.1.1.6.1        ____1hxmA     alignment  gamma-delta t-cell receptor (t-cell receptor delta chain) ga
231.1.1.1.6.1        ______1tvdA   alignment  t cell receptor fragment (es204 v delta) biological_unit    
231.1.1.1.6.1        ______1tcrA   alignment  alpha, beta t-cell receptor (vb8.2db2jb2.4cb2\ va3ja58ca);  
231.1.1.2.1.1        ___1cd8       alignment  Cd8 (t cell c0-receptor, n-terminal 114 residues)           
231.1.1.3.1.1        ___32c2A      alignment  igg1 antibody 32c2 fragment igg1 antibody 32c2 fragment     
231.1.1.4.1.1        ___1f3rB      alignment  acetylcholine receptor alpha fragment Mutant fv antibody fra
231.1.1.5.1.1        ___1neu       alignment  myelin p0 protein fragment                                  
231.1.1.5.1.1        ______1f5wA   alignment  coxsackie virus and adenovirus receptor fragment            
231.1.1.6.1.1        ___1cdy       alignment  t-cell surface glycoprotein cd4 fragment Mutant             
231.1.1.7.1.1        ___1qfoA      alignment  sialoadhesin fragment                                       
231.1.1.8.1.1        ___1f97A      alignment  junction adhesion molecule                                  
231.1.1.9.1.1        ___1kb5B      alignment  kb5-c20 t-cell antigen receptor fragment (tcr vaplha vbeta d
231.1.1.10.1.1       ___1qa9A      alignment  human cd2 protein fragment Mutant biological_unit human cd58
231.1.1.11.1.1       ___1cczA      alignment  cd58 fragment                                               
231.1.1.12.1.1       ___1i85A      alignment  t lymphocyte activation antigen cd86 fragment (b7-2) cytotox
231.1.1.13.1.1       ___1dr9A      alignment  t lymphocyte activation antigen fragment (b7-1 (cd80))      
231.1.1.14.1.1       ___1ah1       alignment  ctla-4 fragment (cd152) biological_unit                     
231.1.1.15.1.1       ___1cs6A      alignment  axonin-1 fragment                                           
231.1.1.15.2.1       ____1bihA     alignment  hemolin                                                     
231.1.1.16.1.1       ___1tlk       alignment  Telokin                                                     
231.1.1.17.1.1       ___1cvsC      alignment  fibroblast growth factor 2 Mutant fibroblast growth factor r
231.1.1.18.1.1       ___2ncm       alignment  neural cell adhesion molecule fragment (ncam domain 1)      
231.1.1.19.1.1       ___1tit       alignment  titin, i27 (connectin i27, titin ig repeat 27)              
231.1.1.20.1.1       ___3ncmA      alignment  neural cell adhesion molecule, large isoform fragment (ncam 
231.1.1.21.1.1       ___1wit       alignment  twitchin 18th igsf module                                   
231.1.1.22.1.1       ___1zxq       alignment  intercellular adhesion molecule-2 fragment (icam-2)         
231.1.1.23.1.1       ___1vcaA      alignment  human vascular cell adhesion molecule-1 (vcam-d1,2)         
231.1.1.24.1.1       ___1bqsA      alignment  mucosal addressin cell adhesion molecule-1 fragment (madcam-
231.1.1.25.1.1       ___1cid       alignment  Cd4 (domains 3 and 4)                                       
231.1.1.26.1.1       ___1itbB      alignment  interleukin-1 beta biological_unit type 1 interleukin-1 rece
231.1.1.27.1.1       ___1fltX      alignment  vascular endothelial growth factor fragment (vegf, vpf) biol
231.1.2.1.1.1        __2fcbA       alignment  fc gamma riib fragment (cd32)                               
231.1.2.2.1.1        ___1nkr       alignment  p58-cl42 kir fragment (killer cell inhibitory receptor) biol
231.1.3.1.1.1        __1iakB       alignment  mhc class ii i-ak hen eggwhite lysozyme peptide             
231.1.3.1.1.1        ______1iakA   alignment  mhc class ii i-ak hen eggwhite lysozyme peptide             
231.1.3.1.1.1        ______1agdB   alignment  b*0801 fragment (b8) beta-2 microglobulin fragment (b2m) hiv
231.1.3.2.1.1        ___1cd1A      alignment  cd1 fragment (mcd1d.1) biological_unit                      
231.1.3.2.2.1        ____1agdA     alignment  b*0801 fragment (b8) beta-2 microglobulin fragment (b2m) hiv
231.1.3.3.1.1        ___1igtB      alignment  igg2a intact antibody - mab231                              
231.1.3.3.2.1        ____1f6aB     alignment  high affinity immunoglobulin epsilon receptor alpha-subunit 
231.1.3.3.3.1        ____1cqkA     alignment  ch3 domain of mak33 antibody fragment Mutant biological_unit
231.1.3.4.1.1        ___1hdmB      alignment  class ii histocompatibility antigen, m alpha chain fragment 
231.1.3.5.1.1        ___1g84A      alignment  immunoglobulin e fragment Mutant                            
231.1.4.1.1.1        __1wwcA       alignment  nt-3 growth factor receptor trkc fragment Mutant            
231.1.5.1.1.1        __1im3D       alignment  hla class i histocompatibility antigen, a-2 alpha chain frag
231.1.6.1.1.1        __1eerB       alignment  erythropoietin Mutant erythropoietin receptor fragment (epob
231.1.6.2.1.1        ___1axiB      alignment  growth hormone (hgh) Mutant growth hormone receptor fragment
231.1.6.3.1.1        ___1bquA      alignment  gp130 fragment                                              
231.1.6.4.1.1        ___1iarB      alignment  interleukin-4 interleukin-4 receptor alpha chain fragment Mu
231.1.6.5.1.1        ___1j7vR      alignment  interleukin-10 (il-10) cytokine synthesis inhibitory factor;
231.1.6.5.1.1        ______1boy    alignment  human tissue factor fragment (tf)                           
231.1.6.6.1.1        ___1jrhI      alignment  antibody a6 fragment interferon-gamma receptor alpha chain f
231.1.6.7.1.1        ___1c8pA      alignment  cytokine receptor common beta chain fragment                
231.1.6.8.1.1        ___1fnhA      alignment  fibronectin fragment                                        
231.1.6.8.2.1        ____1fnf      alignment  fibronectin                                                 
231.1.6.8.3.1        ____1qr4B     alignment  tenascin fragment                                           
231.1.6.9.1.1        ___1ten       alignment  Tenascin (third fibronectin type iii repeat)                
231.1.6.10.1.1       ___1qg3A      alignment  integrin beta-4 subunit fragment                            
231.1.6.11.1.1       ___1cfb       alignment  Drosophila neuroglian (chymotryptic fragment containing the 
231.1.6.12.1.1       ___2fnbA      alignment  fibronectin fragment                                        
231.1.6.13.1.1       ___1f42A      alignment  interleukin-12 beta chain fragment                          
231.1.6.14.1.1       ___1bpv       alignment  titin fragment (a71, connectin) Mutant                      
231.1.7.1.1.1        __1do6A       alignment  superoxide reductase (sor)                                  
231.1.8.1.1.1        __1cto        alignment  granulocyte colony-stimulating factor receptor fragment Muta
231.1.9.1.1.1        __1svb        alignment  tick-borne encephalitis virus glycoprotein                  
231.1.10.1.1.1       __1f00I       alignment  intimin fragment                                            
231.1.10.1.2.1       ____1cwvA     alignment  invasin fragment                                            
231.1.10.2.1.1       ___1qfhA      alignment  gelation factor fragment (actin binding protein 120) biologi
231.1.11.1.1.1       __1b4rA       alignment  pkd1_human fragment                                         
231.1.12.1.1.1       __2mcm        alignment  Macromomycin                                                
231.1.13.1.1.1       __1dfx        alignment  desulfoferrodoxin biological_unit                           
231.1.14.1.1.1       __1qpxA       alignment  papd chaperone Mutant                                       
231.1.14.2.1.1       ___1mspA      alignment  major sperm protein (msp)                                   
231.1.15.1.1.1       __1edhA       alignment  e-cadherin (epithelial cadherin domains 1 and 2, ecad12) Mut
231.2.1.1.1.1        _1who         alignment  allergen phl p 2 (phl p ii)                                 
231.3.1.1.1.1        _1a3qA        alignment  nuclear factor-kappa-b p52 fragment mhc h-2 DNA biological_u
231.3.1.1.2.1        ____1a02N     alignment  nfat fragment (nf-at) biological_unit c-fos Mutant c-jun Mut
231.3.2.1.1.1        __1tupA       alignment  tumor suppressor p53 DNA (5'-d(tpTpTpCpC[TpApGpApCpTpTpGp* c
231.3.3.1.1.1        __1xbrA       alignment  t protein fragment DNA                                      
231.3.4.1.1.1        __1cmoA       alignment  polyomavirus enhancer binding protein 2 fragment (acute myel
231.4.1.1.1.1        _1qouA        alignment  cen                                                         
231.4.1.1.2.1        ____1a44      alignment  phosphatidylethanolamine-binding protein (pebp, pbp)        
231.4.1.2.1.1        ___1fjjA      alignment  hypothetical 17.1 kda protein in modc-bioa intergenic region
231.5.1.1.1.1        _1bw8A        alignment  mu2 adaptin subunit fragment (ap50) internalization signal f
231.5.1.2.1.1        ___1ayoA      alignment  alpha-2-macroglobulin fragment                              
231.5.1.3.1.1        ___1amx       alignment  collagen adhesin fragment (cbd19) biological_unit           
231.5.1.4.1.1        ___1aohA      alignment  cellulosome-integrating protein cipa fragment               
231.5.2.1.1.1        __1hcz        alignment  cytochrome f                                                
231.5.3.1.1.1        __1nbcA       alignment  cellulosomal scaffolding protein a fragment (scafoldin subun
231.5.4.1.1.1        __1xbd        alignment  xylanase d fragment (xbd1, endo-1,4-beta-xylanase d)        
231.5.4.2.1.1        ___1exg       alignment  Exo-1,4-beta-d-glycanase (cellulase, xylanase) (binding doma
231.5.5.1.1.1        __1f13A       alignment  cellular coagulation factor xiii zymogen fragment (cfxiii) b
231.5.6.1.1.1        __1cf1A       alignment  arrestin (retinal s-antigen, 48 kd protein)                 
231.5.7.1.1.1        __1qtsA       alignment  ap-2 clathrin adaptor alpha subunit (alpha- adaptin c) fragm
231.5.7.2.1.1        ___1e42A      alignment  beta2-adaptin (plasma membrane adaptor ha2AP2 ADAPTIN BETA S
231.5.8.1.1.1        __7ahlA       alignment  alpha-hemolysin (alphatoxin) biological_unit                
231.5.8.1.2.1        ____1pvl      alignment  leucocidin (lukf-pv) biological_unit                        
231.6.1.1.1.1        _1rhoA        alignment  rho gdp-dissociation inhibitor 1 (rho guanine nucleotide dis
231.6.2.1.1.1        __1a9v        alignment  mite allergen der p 2 Mutant                                
231.6.3.1.1.1        __1g13A       alignment  ganglioside m2 activator protein fragment                   
231.7.1.1.1.1        _1rlw         alignment  phospholipase a2 fragment (calb domain) Mutant biological_un
231.7.1.2.1.1        ___1djxB      alignment  phosphoinositide-specific phospholipase c, isozyme delta1 (p
231.7.1.3.1.1        ___1rsy       alignment  Synaptotagmin i (first c2 domain) (calb)                    
231.7.1.4.1.1        ___1e8xA      alignment  phosphatidylinositol 3-kinase catalytic subunit fragment (pt
231.7.1.5.1.1        ___1bdyA      alignment  protein kinase c fragment (pkc) Mutant                      
231.8.1.1.1.1        _1yaiA        alignment  copper, zinc superoxide dismutase (cu, zn superoxide dismuta
231.8.1.1.2.1        ____1mfmA     alignment  copper,Zinc superoxide dismutase (q133m2sod) Mutant biologic
231.8.1.2.1.1        ___1qupA      alignment  superoxide dismutase 1 copper chaperone                     
231.9.1.1.1.1        _1i82A        alignment  endo-1,4-beta-xylanase a fragment (xylanase a)              
231.9.2.1.1.1        __1d7bA       alignment  cellobiose dehydrogenase fragment (cellobiose oxidase)      
231.10.1.1.1.1       _1d0aB        alignment  tumor necrosis factor receptor associated protein 2 fragment
232.1.1.1.1.1        1hoe          alignment  Alpha-Amylase inhibitor hoe-467A                            
232.2.1.1.1.1        _1d2oA        alignment  collagen adhesin fragment (cna)                             
233.1.1.1.1.1        2cuaA         alignment  cua fragment                                                
233.1.1.2.1.1        ___1ibzA      alignment  nitrosocyanin                                               
233.1.1.3.1.1        ___1cyx       alignment  cyoa fragment Mutant biological_unit                        
233.1.1.4.1.1        ___2occB      alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
233.1.1.5.1.1        ___1qhqA      alignment  auracyanin                                                  
233.1.1.5.2.1        ____1nwpA     alignment  azurin                                                      
233.1.1.6.1.1        ___1rcy       alignment  rusticyanin biological_unit                                 
233.1.2.1.1.1        __1nif        alignment  nitrite reductase                                           
233.1.2.1.2.1        ____1kcw      alignment  ceruloplasmin biological_unit                               
233.1.2.1.3.1        ____1aozA     alignment  Ascorbate oxidase                                           
233.1.2.1.3.2        _____1a65A    alignment  laccase biological_unit                                     
233.1.3.1.1.1        __1bqk        alignment  pseudoazurin                                                
233.1.3.2.1.1        ___1plc       alignment  Plastocyanin (cu2+, ph 6.0)                                 
233.1.3.3.1.1        ___1aac       alignment  amicyanin                                                   
233.1.4.1.1.1        __2cbp        alignment  cucumber basic protein                                      
234.1.1.1.1.1        1ehxA         alignment  scaffoldin protein fragment (cipc)                          
234.2.1.1.1.1        _1c3gA        alignment  heat shock protein 40 fragment                              
235.1.1.1.1.1        1j8rA         alignment  pyelonephritic adhesin fragment (papg adhesin)              
236.1.1.1.1.1        1vcbC         alignment  elongin b fragment elongin c fragment vhl fragment          
236.1.2.1.1.1        __1kum        alignment  glucoamylase fragment (1,4-alpha-d-glucan glucohydrolase)   
236.1.3.1.1.1        __1etb1       alignment  Transthyretin (prealbumin) mutant with ala 109 replaced by t
236.1.4.1.1.1        __1pfo        alignment  perfringolysin o (pfo)                                      
236.2.1.1.1.1        _1iazA        alignment  equinatoxin ii (eqtii, tenebrosin c)                        
236.2.2.1.1.1        __1thv        alignment  Thaumatin isoform a (orthorhombic crystal form)             
236.3.1.1.1.1        _3pchM        alignment  protocatechuate 3,4-dioxygenase biological_unit             
236.3.1.1.2.1        ____3pchA     alignment  protocatechuate 3,4-dioxygenase biological_unit             
236.3.1.2.1.1        ___1dmhA      alignment  catechol 1,2-dioxygenase (1,2-ctd)                          
237.1.1.1.1.1        1js8A         alignment  hemocyanin fragment (hemocyanin g-type)                     
237.1.1.1.2.1        ____1bt3A     alignment  catechol oxidase (o-diphenol oxidase) biological_unit       
237.1.2.1.1.1        __1lla        alignment  Hemocyanin (subunit type ii)                                
238.1.1.1.1.1        1cyo          alignment  Cytochrome b5 (oxidized)                                    
238.1.1.2.1.1        ___1soxA      alignment  sulfite oxidase biological_unit                             
239.1.1.1.1.1        1cdcA         alignment  cd2 (lfa-2)                                                 
240.1.1.1.1.1        3ssi          alignment  streptomyces subtilisin inhibitor (ssi)                     
241.1.1.1.1.1        1lktA         alignment  tailspike protein fragment (late protein gp9, tail protein, 
242.1.1.1.1.1        1i7oA         alignment  4-hydroxyphenylacetate degradation bifunctional isomeraseDEC
243.1.1.1.1.1        1aerA         alignment  exotoxin a fragment                                         
243.1.1.2.1.1        ___1ddt       alignment  Diphtheria toxin (dimeric)                                  
243.1.2.1.1.1        __1a26        alignment  poly (adp-ribose) polymerase fragment (parp-cf, poly(adp-rib
243.2.1.1.1.1        _1lt3A        alignment  heat-labile enterotoxin fragment (lt-i) Mutant biological_un
243.2.1.2.1.1        ___1bcpA      alignment  pertussis toxin                                             
244.1.1.1.1.1        1qs1A         alignment  adp-ribosyltransferase fragment Mutant                      
244.1.1.1.2.1        ____1g24A     alignment  exoenzyme c3 (mono-adp-ribosyltransferase c3)               
245.1.1.1.1.1        1g6gA         alignment  protein kinase rad53 fragment ser-leu-glu-val-tpo-glu-ala-as
245.1.1.2.1.1        ___1qu5A      alignment  protein kinase spk1 fragment                                
245.1.2.1.1.1        __1ygs        alignment  smad4 fragment (dpc4, hmad4, madr4)                         
246.1.1.1.1.1        1aol          alignment  gp70 fragment (su)                                          
247.1.1.1.1.1        1ihmA         alignment  capsid protein                                              
247.1.1.2.1.1        ___1b35C      alignment  cricket paralysis virus, vp1 (crpv) biological_unit cricket 
247.1.1.3.1.1        ___1b35B      alignment  cricket paralysis virus, vp1 (crpv) biological_unit cricket 
247.1.1.4.1.1        ___1qqp2      alignment  genome polyprotein (fmdv) genome polyprotein (fmdv) genome p
247.1.1.4.2.1        ____1aym2     alignment  human rhinovirus 16 coat protein (hrv16) Mutant biological_u
247.1.1.5.1.1        ___1qqp3      alignment  genome polyprotein (fmdv) genome polyprotein (fmdv) genome p
247.1.1.5.2.1        ____1aym3     alignment  human rhinovirus 16 coat protein (hrv16) Mutant biological_u
247.1.1.6.1.1        ___1b35A      alignment  cricket paralysis virus, vp1 (crpv) biological_unit cricket 
247.1.1.7.1.1        ___1bmv2      alignment  Bean pod mottle virus (middle component)                    
247.1.1.7.2.1        ____1a6cA     alignment  tobacco ringspot virus capsid protein (trsv) biological_unit
247.1.1.8.1.1        ___1smvA      alignment  sesbania mosaic virus coat protein                          
247.1.1.8.2.1        ____1f2nA     alignment  capsid protein                                              
247.1.1.8.3.1        ____2tbvA     alignment  Tomato bushy stunt virus                                    
247.1.1.9.1.1        ___1auyA      alignment  turnip yellow mosaic virus (tymv) biological_unit           
247.1.1.10.1.1       ___2mev1      alignment  Mengo encephalomyocarditis virus coat protein               
247.1.1.11.1.1       ___1qqp1      alignment  genome polyprotein (fmdv) genome polyprotein (fmdv) genome p
247.1.1.12.1.1       ___1pov1      alignment  poliovirus native empty capsid (type 1)                     
247.1.1.12.2.1       ____1aym1     alignment  human rhinovirus 16 coat protein (hrv16) Mutant biological_u
247.1.2.1.1.1        __1bmv1       alignment  Bean pod mottle virus (middle component)                    
247.1.3.1.1.1        __1f15B       alignment  coat protein                                                
247.1.3.2.1.1        ___1cwpA      alignment  cowpea chlorotic mottle virus (ccmv) RNA (5'-(apUpApU)-3') R
247.1.4.1.1.1        __2stv        alignment  Satellite tobacco necrosis virus                            
247.1.5.1.1.1        __1stmA       alignment  satellite panicum mosaic virus (spmv)                       
247.1.5.2.1.1        ___1a34A      alignment  satellite tobacco mosaic virus (stmv) RNA                   
247.1.6.1.1.1        __2cas        alignment  Canine parvovirus empty capsid (strain d) viral protein 2   
247.1.6.2.1.1        ___1dnv       alignment  galleria mellonella densovirus capsid protein biological_uni
247.1.7.1.1.1        __2bbvA       alignment  Black beetle virus capsid protein (bbv) complexed with duple
247.2.1.1.1.1        _1i5pA        alignment  pesticidial crystal protein cry2aa                          
247.2.1.1.2.1        ____1ciy      alignment  cryia(a)                                                    
247.2.1.2.1.1        ___1nukA      alignment  tyrosine-protein kinase receptor eph fragment (nuk) biologic
247.2.2.1.1.1        __1ulo        alignment  endoglucanase c fragment (cenc, endo-1,4-beta-glucanase c)  
247.2.2.2.1.1        ___1dyoA      alignment  endo-1,4-beta-xylanase y fragment (cbm 22, x6b domain)      
247.2.3.1.1.1        __1jhjA       alignment  apc10 Mutant                                                
247.2.3.1.2.1        ____1gof      alignment  Galactose oxidase (ph 4.5)                                  
247.2.3.2.1.1        ___1cztA      alignment  coagulation factor v fragment (activated protein c cofactor)
247.2.3.3.1.1        ___1xnaA      alignment  DNA-repair protein xrcc1 fragment (xrcc1-ntd) Mutant        
247.3.1.1.1.1        _2tnfA        alignment  tumor necrosis factor alpha fragment (tnf-alpha, cachectin) 
247.3.1.1.1.1        ______1aly    alignment  cd40 ligand fragment                                        
247.3.1.1.2.1        ____1d4vB     alignment  tnf-related apoptosis inducing ligand fragment (trail) death
247.3.1.2.1.1        ___1c28A      alignment  30 kd adipocyte complement-related protein precursor (acrp30
247.3.2.1.1.1        __2bpa1       alignment  Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four
247.3.3.1.1.1        __1sfp        alignment  asfp (acidic seminal protein)                               
247.3.4.1.1.1        __2bpa2       alignment  Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four
247.4.1.1.1.1        _1phm         alignment  peptidylglycine alpha-hydroxylating monooxygenase (peptidylg
247.4.2.1.1.1        __1pgs        alignment  Peptide-n(4)-(n-acetyl-beta-d-glucosaminyl) asparagine amida
247.4.3.1.1.1        __1cjdA       alignment  major capsid protein (p3) biological_unit                   
247.5.1.1.1.1        _1dhx         alignment  adenovirus type 2 hexon (adenovirus type 2 polypeptide ii)  
247.6.1.1.1.1        _1ahsA        alignment  african horse sickness virus (serotype 4) vp7 fragment      
247.6.1.1.2.1        ____1bvp1     alignment  Bluetongue virus 10 (usa) vp7 (btv-10 (usa) vp7)            
247.6.2.1.1.1        __1qhdA       alignment  viral capsid vp6                                            
247.7.1.1.1.1        _1qexA        alignment  bacteriophage t4 gene product 9 (gp9) biological_unit       
247.8.1.1.1.1        _1vpsA        alignment  polyomavirus vp1 pentamer biological_unit                   
247.8.1.2.1.1        ___1dzlA      alignment  late major capsid protein l1 Mutant                         
248.1.1.1.1.1        1pdkB         alignment  chaperone protein papd biological_unit protein papk biologic
248.2.1.1.1.1        _1acc         alignment  anthrax protective antigen (pa)                             
248.3.1.1.1.1        _1f35A        alignment  olfactory marker protein Mutant                             
249.1.1.1.1.1        1hgeA         alignment  Hemagglutinin (bromelain digested) mutant with gly 135 repla
249.1.1.2.1.1        ___1flcA      alignment  haemagglutinin-esterase-fusion glycoprotein fragment haemagg
250.1.1.1.1.1        1jhnA         alignment  calnexin fragment                                           
250.1.1.2.1.1        ___1dypA      alignment  kappa-carrageenase fragment Mutant                          
250.1.1.3.1.1        ___1led       alignment  Lectin (fourth isolated from (griffonia simplicifolia)) comp
250.1.1.4.1.1        ___1celA      alignment  1,4-beta-d-glucan cellobiohydrolase i (cellulase)           
250.1.2.1.1.1        __1dykA       alignment  laminin alpha 2 chain fragment Mutant                       
250.1.2.1.2.1        ____1c4rA     alignment  neurexin-i beta fragment                                    
250.1.2.1.3.1        ____1d2sA     alignment  sex hormone-binding globulin fragment (shbg)                
250.1.2.2.1.1        ___1sacA      alignment  Serum amyloid p component (sap)                             
250.1.3.1.1.1        __1lcl        alignment  lysophospholipase (charcot-leyden crystal protein)          
250.1.3.1.1.1        ______1a3k    alignment  galectin-3 fragment                                         
250.1.3.1.1.1        ______1c1lA   alignment  congerin i fragment                                         
250.1.4.1.1.1        __2nlrA       alignment  endoglucanase fragment (celb)                               
250.1.4.1.2.1        ____1axkA     alignment  gluxyn-1 fragment                                           
250.2.1.1.1.1        _1nls         alignment  concanavalin a biological_unit                              
251.1.1.1.1.1        1fxzA         alignment  glycinin g1                                                 
251.1.1.1.2.1        ____1caxB     alignment  Canavalin (jack bean 7s vicilin)                            
251.1.1.1.2.1        ______1dgwA   alignment  canavalin fragment canavalin fragment canavalin fragment    
251.1.1.2.1.1        ___1fi2A      alignment  oxalate oxidase (germin)                                    
251.1.1.3.1.1        ___1pmi       alignment  phosphomannose isomerase (pmi)                              
251.1.2.1.1.1        __1dzrA       alignment  dtdp-4-dehydrorhamnose 3,5-epimerase (dtdp-4-keto-6-deoxyglu
251.1.3.1.1.1        __1ey2A       alignment  homogentisate 1,2-dioxygenase                               
251.1.4.1.1.1        __2arcA       alignment  arabinose operon regulatory protein fragment (arac) biologic
251.2.1.1.1.1        _1bk0         alignment  isopenicillin n synthase biological_unit                    
251.2.1.1.2.1        ____1dcs      alignment  deacetoxycephalosporin c synthase (ring expanding enzyme, ri
251.2.2.1.1.1        __1e5rA       alignment  proline oxidase                                             
251.2.3.1.1.1        __1jr7A       alignment  hypothetical 37.4 kda protein in iley-gabd intergenic region
251.2.3.1.2.1        ____1drtA     alignment  clavaminate synthase 1 fragment (clavaminic acid synthase 1,
252.1.1.1.1.1        1cx4A         alignment  camp-dependent protein kinase regulatory subunit type ii bet
252.1.1.1.2.1        ____1rgs      alignment  camp dependent protein kinase fragment (ri(alpha)) Mutant   
253.1.1.1.1.1        1amm          alignment  gamma b-crystallin (gamma ii-crystallin)                    
253.1.1.1.2.1        ____2bb2      alignment  Beta-b2-crystallin                                          
253.1.1.2.1.1        ___1prs       alignment  Development-specific protein s (spore coat protein s) (NMR, 
253.1.1.3.1.1        ___1ag4       alignment  spherulin 3a (s3a)                                          
253.1.2.1.1.1        __1c01A       alignment  antimicrobial peptide 1                                     
253.1.3.1.1.1        __1g6eA       alignment  antifungal protein fragment                                 
253.1.4.1.1.1        __1f53A       alignment  yeast killer toxin-like protein                             
253.1.5.1.1.1        __1wkt        alignment  yeast killer toxin                                          
253.2.1.1.1.1        _1wapA        alignment  Trp RNA-binding attenuation protein complexed with l-tryptop
253.3.1.1.1.1        _1bhu         alignment  metalloproteinase inhibitor (smpi) biological_unit          
254.1.1.1.1.1        1dupA         alignment  deoxyuridine 5'-triphosphate nucleotidohydrolase (d-utpase) 
254.1.1.2.1.1        ___1dun       alignment  deoxyuridine 5'-triphosphate nucleoditohydrolase (dutpase, d
254.1.2.1.1.1        __1tul        alignment  tlp20                                                       
255.1.1.1.1.1        1sluA         alignment  ecotin (trypsin inhibitor) Mutant anionic trypsin Mutant    
256.1.1.1.1.1        1qhvA         alignment  adenovirus fibre fragment                                   
257.1.1.1.1.1        1p35A         alignment  p35                                                         
258.1.1.1.1.1        1iyu          alignment  dihydrolipoamide acetyltransferase component of pyruvate deh
258.1.1.2.1.1        ___1ghj       alignment  e2, the dihydrolipoamide succinyltransferase component of 2-
258.1.1.3.1.1        ___1bdo       alignment  acetyl-coa carboxylase fragment (functional fragment of biot
258.1.2.1.1.1        __1htp        alignment  H-protein complexed with lipoic acid charged in methylamine 
258.1.3.1.1.1        __1fyc        alignment  dihydrolipoamide acetyltransferase (e2p) fragment           
258.2.1.1.1.1        _1gpr         alignment  Glucose permease (domain iia)                               
259.1.1.1.1.1        1ejfA         alignment  progesterone receptor p23 fragment                          
259.1.1.2.1.1        ___1shsA      alignment  small heat shock protein biological_unit                    
259.2.1.1.1.1        _1ffkP        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
260.1.1.1.1.1        1i9bA         alignment  acetylcholine binding protein (achbp) Mutant                
261.1.1.1.1.1        1dtvA         alignment  carboxypeptidase inhibitor (lci)                            
261.2.1.1.1.1        _1a1x         alignment  hmtcp-1                                                     
262.1.1.1.1.1        1h8uA         alignment  eosinophil granule major basic protein 1 (mbp)              
262.1.1.1.1.1        ______1qddA   alignment  lithostathine (pancreatic stone protein, psp) Mutant        
262.1.1.2.1.1        ___1esl       alignment  E-selectin (lectin and egf domains, residues 1 - 157) (forme
262.1.1.3.1.1        ___1rtm1      alignment  Mannose-binding protein a (clostripain fragment) (cl-mbp-a) 
262.1.1.3.1.1        ______1htn    alignment  tetranectin fragment                                        
262.1.1.3.1.1        ______1byfA   alignment  polyandrocarpa lectin (tc14)                                
262.1.1.4.1.1        ___1qo3C      alignment  mhc class i h-2dd heavy chain fragment (h-2 class i histocom
262.1.1.5.1.1        ___1fm5A      alignment  early activation antigen cd69 fragment (early t-cell activat
262.1.1.6.1.1        ___1b6e       alignment  cd94 fragment                                               
262.1.1.7.1.1        ___1eggA      alignment  macrophage mannose receptor fragment                        
262.1.1.8.1.1        ___1ixxB      alignment  coagulation factors ixX-BINDING PROTEIN fragment (ixX-BP)   
262.1.1.9.1.1        ___2afpA      alignment  sea raven type ii antifreeze protein                        
262.2.1.1.1.1        _1preA        alignment  proaerolysin                                                
262.3.1.1.1.1        _1koe         alignment  endostatin fragment                                         
262.4.1.1.1.1        _1tsg         alignment  tsg-6 fragment (proteoglycan tandem repeat, ptr)            
263.1.1.1.1.1        2sli          alignment  intramolecular trans-sialidase fragment                     
263.1.1.1.1.2        _____1eut     alignment  sialidase (neuraminidase)                                   
263.1.1.1.1.3        _____3sil     alignment  sialidase Mutant                                            
263.1.1.1.1.4        _____1kit     alignment  sialidase (neuraminidase)                                   
263.1.1.1.2.1        ____1e8tA     alignment  hemagglutinin-neuraminidase fragment (hn)                   
263.1.1.1.3.1        ____2qwc      alignment  neuraminidase fragment (sialidase) Mutant biological_unit   
263.1.1.2.1.1        ___1qlgA      alignment  3-phytase (phytase, phytate 3-phosphatase, myo-inositol-hexa
263.1.1.2.2.1        ____1e1aA     alignment  diisopropylfluorophosphatase (dfpase)                       
263.1.1.2.3.1        ____1c9uA     alignment  soluble quinoprotein glucose dehydrogenase                  
263.1.1.2.4.1        ____1ijqA     alignment  low-density lipoprotein receptor fragment (ldl receptor)    
263.1.1.2.5.1        ____1crzA     alignment  tolb protein                                                
263.1.1.3.1.1        ___1tbgA      alignment  transducin fragment (guanine nucleotide-binding protein g) t
263.1.1.3.1.2        _____1erjA    alignment  transcriptional repressor tup1 fragment                     
263.1.1.3.2.1        ____1jv2A     alignment  integrin, alpha v fragment (vitronectin receptor, alpha poly
263.1.1.3.3.1        ____1qniA     alignment  nitrous-oxide reductase                                     
263.1.1.4.1.1        ___1bpoA      alignment  clathrin fragment                                           
263.1.1.5.1.1        ___2bbkH      alignment  Methylamine dehydrogenase (madh)                            
263.1.1.5.2.1        ____1qksA     alignment  cytochrome cd1 nitrite reductase biological_unit            
263.1.1.6.1.1        ___4aahA      alignment  methanol dehydrogenase (medh)                               
263.1.2.1.1.1        __1jtdB       alignment  tem-1 beta-lactamase beta-lactamase inhibitor protein ii    
263.1.2.1.2.1        ____1a12A     alignment  regulator of chromosome condensation 1 fragment (rcc1) biolo
263.1.3.1.1.1        __1hxn        alignment  hemopexin (hpx)                                             
263.1.3.1.2.1        ____1gen      alignment  gelatinase a fragment (mmp-2, 72kd type iv collagenase)     
263.1.3.1.3.1        ____1qhuA     alignment  hemopexin fragment                                          
263.1.4.1.1.1        __1tl2A       alignment  tachylectin-2 (l10)                                         
263.2.1.1.1.1        _1b2pA        alignment  lectin biological_unit                                      
264.1.1.1.1.1        1eqkA         alignment  oryzacystatin-i                                             
264.1.1.2.1.1        ___1cewI      alignment  Cystatin                                                    
264.1.1.3.1.1        ___1stfI      alignment  Papain (cys 25 carboxymethylated) complexed with the inhibit
264.1.1.4.1.1        ___1molA      alignment  Monellin (single-chain, fused)                              
264.1.2.1.1.1        __1ksiB       alignment  copper amine oxidase biological_unit                        
264.1.2.1.1.2        _____1a2vA    alignment  methylamine oxidase biological_unit                         
264.1.2.1.1.3        _____1oacA    alignment  copper amine oxidase                                        
264.2.1.1.1.1        _1jn5A        alignment  p15 (ntf2-related export protein 1) tap fragment (tip associ
264.2.1.1.1.1        ______1ounA   alignment  nuclear transport factor 2 (pp15, b2)                       
264.2.1.2.1.1        ___1opy       alignment  delta5-3-ketosteroid iosmerase (ksi, 3-ketosteroid isomerase
264.2.1.3.1.1        ___1jn5B      alignment  p15 (ntf2-related export protein 1) tap fragment (tip associ
264.2.1.4.1.1        ___3stdA      alignment  scytalone dehydratase                                       
264.2.1.5.1.1        ___1ndoB      alignment  napthalene 1,2-dioxygenase biological_unit                  
264.2.2.1.1.1        __1bp1        alignment  bactericidalPERMEABILITY-INCREASING PROTEIN (bpi) Mutant bio
265.1.1.1.1.1        1pcfA         alignment  transcriptional coactivator pc4 fragment (p15)              
266.1.1.1.1.1        1g96A         alignment  cystatin c (gamma-trace, post-gamma-globulin)               
267.1.1.1.1.1        1qqgA         alignment  insulin receptor substrate 1 fragment (irs-1)               
267.1.1.2.1.1        ___1faoA      alignment  dual adaptor of phosphotyrosine and 3- phosphoinositides fra
267.1.1.3.1.1        ___1btn       alignment  beta-spectrin fragment                                      
267.1.1.4.1.1        ___1dynA      alignment  Dynamin (pleckstrin homology domain) (dynph)                
267.1.1.5.1.1        ___1btkA      alignment  bruton's tyrosine kinase fragment (bruton's agammaglobulinem
267.1.1.6.1.1        ___1pls       alignment  Pleckstrin (n-terminal pleckstrin homology domain) mutant wi
267.1.1.7.1.1        ___1mai       alignment  phospholipase c delta-1 fragment                            
267.1.1.8.1.1        ___1rrpB      alignment  ran nuclear pore complex protein nup358                     
267.1.1.9.1.1        ___1evhA      alignment  mena evh1 domain fragment (wh1 domain) peptide acta fragment
267.1.1.10.1.1       ___1bak       alignment  g-protein coupled receptor kinase 2 fragment (grk-2, beta-ad
267.1.2.1.1.1        __1awe        alignment  sos1 fragment                                               
267.1.3.1.1.1        __1fhoA       alignment  unc-89 fragment                                             
267.1.4.1.1.1        __2nmbA       alignment  numb protein fragment gppy peptide                          
267.1.4.2.1.1        ___1x11A      alignment  x11 fragment 13-mer peptide                                 
267.1.4.3.1.1        ___1shcA      alignment  shc fragment trka receptor phosphopeptide                   
268.1.1.1.1.1        2omf          alignment  matrix porin outer membrane protein f (matrix porin, ompf po
268.1.1.1.2.1        ____1e54A     alignment  outer membrane porin protein 32 (omp32) omp32               
268.1.1.1.3.1        ____3prn      alignment  porin Mutant biological_unit                                
268.1.1.1.4.1        ____2por      alignment  Porin (crystal form b)                                      
268.1.1.2.1.1        ___2mprA      alignment  maltoporin fragment (lam-b, mal-l) biological_unit          
268.1.1.2.1.2        _____1a0tP    alignment  sucrose-specific porin biological_unit                      
268.1.1.3.1.1        ___1fepA      alignment  ferric enterobactin receptor (fepa)                         
268.1.1.3.2.1        ____1by5A     alignment  ferric hydroxamate uptake protein (fhua) ferrichrome        
268.1.2.1.1.1        __1qd5A       alignment  outer membrane phospholipase a Mutant                       
268.1.3.1.1.1        __1qj8A       alignment  outer membrane protein x                                    
268.1.3.2.1.1        ___1bxwA      alignment  outer membrane protein a fragment Mutant                    
268.1.3.3.1.1        ___1i78A      alignment  protease vii (ompt, omptin, outer membrane protein 3b) Mutan
268.1.4.1.1.1        __1swuA       alignment  streptavidin Mutant                                         
268.1.5.1.1.1        __4bcl        alignment  bacteriochlorophyll a protein biological_unit               
268.2.1.1.1.1        _1dwnA        alignment  phage coat protein                                          
268.2.1.2.1.1        ___1qbeA      alignment  bacteriophage q beta capsid                                 
268.2.1.3.1.1        ___1msc       alignment  Bacteriophage ms2 unassembled coat protein dimer (translatio
268.3.1.1.1.1        _1ugiA        alignment  uracil-DNA glycosylase inhibitor (ugi) biological_unit      
268.3.2.1.1.1        __1ospO       alignment  fab 184.1 outer surface protein a (ospa) Mutant             
268.4.1.1.1.1        _1jtgB        alignment  beta-lactamase tem Mutant beta-lactamase inhibitory protein 
269.1.1.1.1.1        1h91A         alignment  crustacyanin a1 subunit (apo a1)                            
269.1.1.1.2.1        ____1bbpA     alignment  Bilin binding protein (BBP)                                 
269.1.1.1.3.1        ____1aqb      alignment  retinol-binding protein (rbp)                               
269.1.1.2.1.1        ___1np1A      alignment  nitrophorin 1 (np1) biological_unit                         
269.1.1.3.1.1        ___1bj7       alignment  d 2 (dander major allergen bda20, dermal allergen bda20) bio
269.1.1.3.2.1        ____1mup      alignment  Major urinary protein complex with 2-(sec-butyl) thiazoline 
269.1.1.3.3.1        ____1bebA     alignment  beta-lactoglobulin biological_unit                          
269.1.1.3.4.1        ____1epaA     alignment  Epididymal retinoic acid-binding protein (androgen dependent
269.1.1.4.1.1        ___1qftA      alignment  female-specific histamine binding protein 2 female-specific 
269.1.1.5.1.1        ___1nglA      alignment  ngal fragment (hngal, hnl) biological_unit                  
269.1.1.6.1.1        ___1obpA      alignment  odorant-binding protein (obp)                               
269.1.2.1.1.1        __1hmt        alignment  Fatty acid binding protein (human muscle, m-fabp) complexed 
269.1.3.1.1.1        __1avgI       alignment  thrombin triabin                                            
269.2.1.1.1.1        _1smpI        alignment  serratia metallo proteinase erwinia chrysanthemi inhibitor  
270.1.1.1.1.1        1bvqA         alignment  4-hydroxybenzoyl coa thioesterase                           
270.1.1.2.1.1        ___1c8uA      alignment  acyl-coa thioesterase ii                                    
270.1.1.3.1.1        ___1mkaA      alignment  beta-hydroxydecanoyl thiol ester dehydrase (beta-hydroxydeca
271.1.1.1.1.1        1ffkU         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
272.1.1.1.1.1        1bv1          alignment  bet v 1 (major pollen allergen bet v 1-a)                   
272.1.1.2.1.1        ___1em2A      alignment  mln64 protein fragment Mutant                               
272.1.1.3.1.1        ___1fvzA      alignment  phosphatidylinositol transfer protein (pitp)                
272.1.2.1.1.1        __3pmgA       alignment  alpha-d-glucose-1,6-bisphosphate (phosphoglucomutase)       
272.2.1.1.1.1        _1jenA        alignment  s-adenosylmethionine decarboxylase (beta chain) (adometdc, s
272.3.1.1.1.1        _1d8iA        alignment  mrna triphosphatase cet1                                    
272.4.1.1.1.1        _1eaf         alignment  Dihydrolipoyl transacetylase (catalytic domain (residues 382
272.4.1.1.2.1        ____3cla      alignment  Type III chloramphenicol acetyltransferase (CAT=III=) comple
273.1.1.1.1.1        1fmaE         alignment  molybdopterin convertin factor, subunit 1 molybdopterin conv
273.2.1.1.1.1        _2fua         alignment  l-fuculose-1-phosphate aldolase                             
274.1.1.1.1.1        1ew4A         alignment  cyay protein                                                
274.1.1.2.1.1        ___1dlxA      alignment  frataxin fragment                                           
274.2.1.1.1.1        _2aop         alignment  sulfite reductase hemoprotein (sirhp) biological_unit       
275.1.1.1.1.1        1u9aA         alignment  ubc9 (ubiquitin-conjugating enzyme)                         
275.1.1.2.1.1        ___1jatB      alignment  ubiquitin-conjugating enzyme e2-17.5 kda ubiquitin-conjugati
276.1.1.1.1.1        1d0qA         alignment  DNA primase fragment                                        
277.1.1.1.1.1        2polA         alignment  Pol iii (beta subunit)                                      
277.1.1.1.2.1        ____1plq      alignment  Proliferating cell nuclear antigen (pcna) (synchrotron x-ray
277.1.1.2.1.1        ___1dmlA      alignment  DNA polymerase processivity factor fragment (DNA-binding pro
277.1.1.3.1.1        ___1b77A      alignment  sliding clamp (gp45)                                        
278.1.1.1.1.1        1qaeA         alignment  extracellular endonuclease                                  
279.1.1.1.1.1        1g8jB         alignment  arsenite oxidase fragment arsenite oxidase fragment         
279.1.1.2.1.1        ___1fqtA      alignment  rieske-type ferredoxin of biphenyl dioxygenase (biphenyl dio
279.1.1.3.1.1        ___1rie       alignment  rieske iron-sulfur protein fragment (ubiquinol-cytochrome c 
279.1.1.4.1.1        ___1rfs       alignment  rieske protein fragment (rieske iron-sulfur protein, risp)  
279.1.2.1.1.1        __1ndoA       alignment  napthalene 1,2-dioxygenase biological_unit                  
280.1.1.1.1.1        1sek          alignment  serpin k biological_unit                                    
280.1.1.1.1.2        _____1ovaA    alignment  Ovalbumin (egg albumin)                                     
280.1.1.1.2.1        ____1c8oA     alignment  ice inhibitor fragment (cytokine response modifier protein) 
281.1.1.1.1.1        1eypA         alignment  chalcone-flavonone isomerase 1 (chalcone isomerase 1)       
281.2.1.1.1.1        _1e44B        alignment  colicin e3 fragment immunity protein                        
282.1.1.1.1.1        1b2vA         alignment  heme-binding protein a (hasa) biological_unit               
283.1.1.1.1.1        1dujA         alignment  spindle assembly checkpoint protein fragment                
284.1.1.1.1.1        1qhlA         alignment  cell division protein mukb fragment                         
284.1.1.2.1.1        ___1f2tA      alignment  rad50 abc-atpase fragment rad50 abc-atpase fragment         
285.1.1.1.1.1        1f32A         alignment  major pepsin inhibitor pi-3                                 
286.1.1.1.1.1        1hzgA         alignment  cytotoxic necrotizing factor 1 fragment (cnf1) Mutant       
287.1.1.1.1.1        1auuA         alignment  sacy fragment                                               
288.1.1.1.1.1        1rgeA         alignment  ribonuclease                                                
288.1.1.2.1.1        ___1b20A      alignment  barnase Mutant                                              
288.1.2.1.1.1        __9rnt        alignment  Ribonuclease t=1= complex with ca==2+==                     
288.1.2.2.1.1        ___1aqzA      alignment  restrictocin                                                
289.1.1.1.1.1        1f3uA         alignment  transcription initiation factor iif, beta subunit fragment (
289.1.2.1.1.1        __1f3uB       alignment  transcription initiation factor iif, beta subunit fragment (
290.1.1.1.1.1        1yua          alignment  topoisomerase i fragment                                    
291.1.1.1.1.1        1qyp          alignment  RNA polymerase ii fragment                                  
291.1.2.1.1.1        __1tfi        alignment  Transcriptional elongation factor sii (tfiis, nucleic-acid b
291.2.1.1.1.1        _1ffkZ        alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
292.1.1.1.1.1        1pft          alignment  tfiib fragment (pftfiibn)                                   
292.2.1.1.1.1        _1dl6A        alignment  transcription factor ii b (tfiib) fragment                  
293.1.1.1.1.1        1e25A         alignment  extended-spectrum beta-lactamase per-1 Mutant               
293.1.1.1.2.1        ____1btl      alignment  Beta-lactamase tem1                                         
293.1.1.1.3.1        ____1skf      alignment  d-alanyl-d-alanine transpeptidase                           
293.1.1.1.4.1        ____1pmd      alignment  peptidoglycan synthesis multifunctional enzyme              
293.1.1.1.5.1        ____1fofA     alignment  beta lactamase oxa-10 (oxa-10)                              
293.1.1.2.1.1        ___3pte       alignment  D-alanyl-d-alanine carboxypeptidaseTRANSPEPTIDASE           
293.1.1.2.2.1        ____1ei5A     alignment  d-aminopeptidase (dap)                                      
293.1.1.2.3.1        ____1gceA     alignment  beta-lactamase (cephalosporinase)                           
293.2.1.1.1.1        _1pne         alignment  Profilin                                                    
293.2.1.1.2.1        ____3nul      alignment  profilin i                                                  
293.2.2.1.1.1        __1f5mB       alignment  gaf                                                         
293.2.3.1.1.1        __1eq6A       alignment  mog1p fragment                                              
293.3.1.1.1.1        _1h8mA        alignment  synaptobrevin homolog 1 fragment                            
293.3.1.2.1.1        ___1ifqA      alignment  vesicle trafficking protein sec22b fragment                 
294.1.1.1.1.1        1fx3B         alignment  protein-export protein secb (secb)                          
294.2.1.1.1.1        _1914         alignment  signal recognition particle 914 FUSION PROTEIN fragment (srp
295.1.1.1.1.1        3pyp          alignment  photoactive yellow protein (pyp)                            
295.1.1.2.1.1        ___1drmA      alignment  sensor protein fixl fragment                                
295.1.1.3.1.1        ___1bywA      alignment  human erg potassium channel fragment Mutant                 
295.2.1.1.1.1        _1jg5A        alignment  gtp cyclohydrolase i feedback regulatory protein            
296.1.1.1.1.1        1qu6A         alignment  protein kinase pkr fragment                                 
296.1.2.1.1.1        __1di2A       alignment  double stranded RNA binding protein a fragment (xlrbpa) Muta
296.1.3.1.1.1        __1imuA       alignment  hypothetical protein hi0257                                 
296.2.1.1.1.1        _1pkp         alignment  Ribosomal protein s5 (prokaryotic)                          
297.1.1.1.1.1        1h54B         alignment  maltose phosphorylase                                       
298.1.1.1.1.1        1ggxA         alignment  fluorescent protein fp583 (rfp)                             
298.1.1.1.2.1        ____1ema      alignment  green fluorescent protein Mutant                            
298.1.1.1.3.1        ____1h4uA     alignment  nidogen-1 fragment Mutant                                   
298.1.2.1.1.1        __1i7fA       alignment  heat shock protein 33 fragment Mutant                       
299.1.1.1.1.1        1a1d          alignment  RNA polymerase fragment                                     
299.2.1.1.1.1        _1fw9A        alignment  chorismate lyase fragment Mutant                            
300.1.1.1.1.1        1f7lA         alignment  holo-(acyl carrier protein) synthase Mutant                 
300.1.2.1.1.1        __1qr0A       alignment  4'-phosphopantetheinyl transferase sfp                      
301.1.1.1.1.1        1e6fA         alignment  mannose-6-phosphate receptor (mir-receptor) fragment        
301.1.1.2.1.1        ___1m6pA      alignment  cation-dependent mannose-6-phosphate receptor fragment (cdmp
301.2.1.1.1.1        _2cba         alignment  Carbonic anhydrase ii (50 mm tris, 3 m ammonium sulfate, ph 
302.1.1.1.1.1        1dfcA         alignment  fascin fragment (actin bundling protein)                    
302.1.1.1.2.1        ____1bfg      alignment  Basic fibroblast growth factor mutant with cys 69 replaced b
302.1.1.2.1.1        ___2ila       alignment  Interleukin-1Alpha (IL-1Alpha)                              
302.1.1.2.2.1        ____2i1b      alignment  Interleukin-1Beta (IL-1Beta)                                
302.1.1.3.1.1        ___1hce       alignment  Hisactophilin (NMR, minimized average structure)            
302.1.1.4.1.1        ___1dqgA      alignment  mannose receptor fragment                                   
302.1.1.4.2.1        ____1abrB     alignment  Abrin-a complexed with two sugar chains                     
302.1.1.5.1.1        ___1jlyA      alignment  agglutinin (amaranthin, aca)                                
302.1.1.6.1.1        ___1wba       alignment  winged bean albumin 1                                       
302.1.1.6.2.1        ____1avaC     alignment  barley alpha-amylase 2(cv menuet) (amy2) barley alpha-amylas
302.1.1.7.1.1        ___1a8d       alignment  tetanus neurotoxin fragment Mutant                          
302.1.1.8.1.1        ___1irp       alignment  Interleukin-1 receptor antagonist protein (NMR, 12 structure
303.1.1.1.1.1        1fn9A         alignment  outer-capsid protein sigma 3                                
304.1.1.1.1.1        1hufA         alignment  tyrosine phosphatase yoph fragment (virulence protein)      
305.1.1.1.1.1        1qp6A         alignment  alpha2d biological_unit                                     
305.2.1.1.1.1        _1dd3C        alignment  50s ribosomal protein l7L12 50s ribosomal protein l7L12     
306.1.1.1.1.1        1f93E         alignment  dimerization cofactor of hepatocyte nuclear factor 1-alpha (
306.2.1.1.1.1        _1b0nB        alignment  sinr protein sini protein                                   
307.1.1.1.1.1        1abz          alignment  alpha-t-alpha (ata)                                         
307.2.1.1.1.1        _1r2aA        alignment  camp-dependent protein kinase type ii regulatory subunit fra
308.1.1.1.1.1        1dp3A         alignment  tram protein fragment                                       
309.1.1.1.1.1        1dmlB         alignment  DNA polymerase processivity factor fragment (DNA-binding pro
310.1.1.1.1.1        1fvyA         alignment  parathyroid hormone fragment                                
311.1.1.1.1.1        2cpgA         alignment  transcriptional repressor copg fragment (repa protein)      
311.1.2.1.1.1        __1bazA       alignment  arc repressor (regulatory protein arc) Mutant biological_uni
311.2.1.1.1.1        _1cmbA        alignment  Met apo-repressor (metj)                                    
312.1.1.1.1.1        1huuA         alignment  protein hu (bsb, ns) biological_unit                        
313.1.1.1.1.1        1ajqA         alignment  penicillin amidohydrolase (penicillin acylase) biological_un
313.1.1.2.1.1        ___1fm2A      alignment  glutaryl 7-aminocephalosporanic acid acylase fragment (cepha
314.1.1.1.1.1        2lefA         alignment  lymphoid enhancer-binding factor fragment (lef-1 hmg) Mutant
314.1.2.1.1.1        __1cktA       alignment  high mobility group 1 protein fragment (hmg-1, amphoterin, h
314.1.3.1.1.1        __1hryA       alignment  human sry DNA                                               
315.1.1.1.1.1        1c1kA         alignment  bpt4 gene 59 helicase assembly protein                      
316.1.1.1.1.1        1ycqA         alignment  mdm2 (mdm2) p53 fragment                                    
317.1.1.1.1.1        1qc7A         alignment  flig fragment                                               
317.2.1.1.1.1        _1utg         alignment  Uteroglobin (oxidized)                                      
317.3.1.1.1.1        _1aca         alignment  Acyl-coenzyme a binding protein (acbp) complex with palmitoy
318.1.1.1.1.1        1be3F         alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
319.1.1.1.1.1        1fs1A         alignment  cyclin aCDK2-ASSOCIATED P19 fragment (skp2 f-box) cyclin aCD
320.1.1.1.1.1        1e79I         alignment  atp synthase alpha chain heart isoform (bovine mitochondrial
321.1.1.1.1.1        1cd31         alignment  scaffolding protein gpd capsid protein gpf spike protein gpg
322.1.1.1.1.1        1fjfR         alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
323.1.1.1.1.1        1h9eA         alignment  thymopoietin fragment (lamina-associated polypeptide 2)     
324.1.1.1.1.1        1f3mA         alignment  serineTHREONINE-PROTEIN KINASE PAK-ALPHA fragment serineTHRE
325.1.1.1.1.1        1bqt          alignment  insulin-like growth factor-i (somatomedin c)                
326.1.1.1.1.1        2gf1          alignment  Insulin-like growth factor (NMR, minimum average structure) 
327.1.1.1.1.1        1zeiA         alignment  insulin (b28asp-x-mcr) Mutant biological_unit               
327.2.1.1.1.1        _1bg8A        alignment  hdea (10k-s protein, hypothetical protein a)                
328.1.1.1.1.1        1ubi          alignment  Ubiquitin                                                   
328.1.1.2.1.1        ___1vcbA      alignment  elongin b fragment elongin c fragment vhl fragment          
328.1.1.3.1.1        ___1ef1A      alignment  moesin fragment moesin fragment                             
328.1.1.4.1.1        ___1h8cA      alignment  fas-associated factor 1 fragment (faf1)                     
328.1.1.5.1.1        ___1lfdA      alignment  ralgds fragment ras fragment Mutant                         
328.1.2.1.1.1        __1c1yB       alignment  ras-related protein rap-1a fragment proto-onkogene serineTHR
328.1.3.1.1.1        __1eo6A       alignment  golgi-associated atpase enhancer of 16 kd (gate-16)         
328.1.4.1.1.1        __1ip9A       alignment  bem1 protein fragment                                       
328.1.5.1.1.1        __1a5r        alignment  sumo-1 (pic1, gmp1, ubl1, sentrin)                          
328.1.6.1.1.1        __1fmaD       alignment  molybdopterin convertin factor, subunit 1 molybdopterin conv
328.1.7.1.1.1        __1f0zA       alignment  this protein                                                
328.2.1.1.1.1        _1qlaB        alignment  fumarate reductase flavoprotein subunit fumarate reductase i
328.2.2.1.1.1        __1fehA       alignment  periplasmic hydrogenase 1                                   
328.2.3.1.1.1        __1ayfA       alignment  adrenodoxin                                                 
328.2.3.2.1.1        ___1awd       alignment  ferredoxin                                                  
328.2.4.1.1.1        __1qj2A       alignment  carbon monoxide dehydrogenase carbon monoxide dehydrogenase 
328.3.1.1.1.1        _2ptl         alignment  Protein l (b1 domain) (NMR, 21 structures)                  
328.3.2.1.1.1        __2igd        alignment  protein g fragment                                          
328.4.1.1.1.1        _1c9fA        alignment  caspase-activated dnase fragment (dnase inhibited by DNA fra
328.5.1.1.1.1        _1jruA        alignment  p47 protein fragment (xy40 protein)                         
329.1.1.1.1.1        1d4bA         alignment  human cell death-inducing effector b fragment (cide b)      
330.1.1.1.1.1        1g0sA         alignment  hypothetical 23.7 kda protein in icc-tolc intergenic region 
330.1.1.2.1.1        ___1i9aA      alignment  isopentenyl-diphosphate delta-isomerase (dimethylallyl dipho
330.1.1.3.1.1        ___1f3yA      alignment  diadenosine 5',5'''-p1,P4-tetraphosphate hydrolase fragment 
330.1.2.1.1.1        __1tum        alignment  mutator mutt protein (muttqc, dgtp pyrophosphohydrolase, 7,8
330.2.1.1.1.1        _2sak         alignment  staphylokinase Mutant                                       
330.2.1.2.1.1        ___1bmlC      alignment  plasmin fragment Mutant streptokinase                       
331.1.1.1.1.1        1b79A         alignment  dnab helicase fragment                                      
331.2.1.1.1.1        _1b25A        alignment  formaldehyde ferredoxin oxidoreductase fragment             
332.1.1.1.1.1        1feuA         alignment  50s ribosomal protein l25 (ribosomal protein tl5) 19 nt frag
332.1.1.2.1.1        ___1dfuP      alignment  ribosomal protein l25 5s rrna fragment 5s rrna fragment     
333.1.1.1.1.1        1tif          alignment  translation initiation factor 3 (if3-n)                     
334.1.1.1.1.1        1jb0C         alignment  photosystem i p700 chlorophyll a apoprotein a1 (photosystem 
334.1.1.2.1.1        ___1xer       alignment  ferredoxin                                                  
334.1.2.1.1.1        __2fxb        alignment  Ferredoxin                                                  
334.1.2.2.1.1        ___1fxd       alignment  Ferredoxin ii                                               
334.1.3.1.1.1        __2fdn        alignment  ferredoxin                                                  
334.1.4.1.1.1        __1a6l        alignment  ferredoxin Mutant biological_unit                           
335.1.1.1.1.1        1ektA         alignment  transcription state regulatory protein abrb fragment        
336.1.1.1.1.1        1gyfA         alignment  cytoplasmic domain binding protein (cd2bp2) fragment        
337.1.1.1.1.1        1vcbB         alignment  elongin b fragment elongin c fragment vhl fragment          
337.1.1.2.1.1        ___1fqvD      alignment  skp2 fragment (cyclin aCDK2-ASSOCIATED PROTEIN P45) skp1 (cy
337.1.1.3.1.1        ___1buoA      alignment  promyelocytic leukemia zinc finger protein plzf fragment (po
337.1.2.1.1.1        __1t1dA       alignment  potassium channel kv1.1 fragment                            
338.1.1.1.1.1        1hucA         alignment  Cathepsin b                                                 
338.2.1.1.1.1        _1vib         alignment  neurotoxin b-iv                                             
339.1.1.1.1.1        1ehs          alignment  heat-stable enterotoxin b (stb)                             
340.1.1.1.1.1        1ppt          alignment  Avian pancreatic polypeptide                                
340.2.1.1.1.1        _1bba         alignment  Bovine pancreatic polypeptide (bpp) (NMR, mean structure)   
341.1.1.1.1.1        1aie          alignment  p53 fragment                                                
342.1.1.1.1.1        1qbfA         alignment  peptide yy fragment (pyy)                                   
343.1.1.1.1.1        1ery          alignment  pheromone er-11 (euplomone r11)                             
343.1.2.1.1.1        __2erl        alignment  mating pheromone er-1                                       
343.1.3.1.1.1        __1erd        alignment  Pheromone er-2 (NMR, 20 structures)                         
344.1.1.1.1.1        1edvA         alignment  rhodopsin fragment                                          
345.1.1.1.1.1        1iba          alignment  glucose permease fragment                                   
346.1.1.1.1.1        1r69          alignment  434 repressor (amino-terminal domain) (r1-69)               
346.1.1.2.1.1        ___1b0nA      alignment  sinr protein sini protein                                   
346.1.2.1.1.1        __1lmb3       alignment  Lambda repressorOPERATOR COMPLEX                            
346.1.3.1.1.1        __1dw9A       alignment  cyanate lyase (cyanate hydrolase, cyanase)                  
346.1.4.1.1.1        __1neq        alignment  DNA-binding protein ner                                     
347.1.1.1.1.1        1pru          alignment  purine repressor fragment                                   
347.2.1.1.1.1        _1uxc         alignment  fructose repressor fragment (frur (1-57)) Mutant            
348.1.1.1.1.1        1dm9A         alignment  hypothetical 15.5 kd protein in mrca-pcka intergenic region 
348.1.2.1.1.1        __1c05A       alignment  ribosomal protein s4 delta 41 fragment                      
349.1.1.1.1.1        1vpu          alignment  vpu protein fragment (vpu(39-81)) Mutant                    
350.1.1.1.1.1        1ebdC         alignment  dihydrolipoamide dehydrogenase (e3bd) dihydrolipoamide acety
350.2.1.1.1.1        _1bbl         alignment  Dihydrolipoamide succinyltransferase (e3-binding domain) cor
351.1.1.1.1.1        1vii          alignment  villin fragment (hp-36, r42-76)                             
352.1.1.1.1.1        1iieA         alignment  hla-dr antigens associated invariant chain fragment (hla cla
353.1.1.1.1.1        1ijxA         alignment  secreted frizzled-related sequence protein 3 fragment Mutant
354.1.1.1.1.1        1han          alignment  2,3-dihydroxybiphenyl 1,2-dioxygenase (biphenyl-2,3-diol 1,2
354.1.1.1.2.1        ____1mpyA     alignment  catechol 2,3-dioxygenase (metapyrocatechase, mpc) biological
354.1.1.1.3.1        ____1cjxA     alignment  4-hydroxyphenylpyruvate dioxygenase                         
354.1.1.2.1.1        ___1jc4A      alignment  methylmalonyl-coa epimerase                                 
354.1.2.1.1.1        __1ecsA       alignment  bleomycin resistance protein                                
354.1.2.1.1.1        ______1bylA   alignment  bleomycin resistance protein (sh-ble)                       
354.1.2.2.1.1        ___1qipA      alignment  lactoylglutathione lyase (glyoxalase i)                     
355.1.1.1.1.1        1e8pA         alignment  endoglucanase fragment (dockerin)                           
356.1.1.1.1.1        2jhbA         alignment  core binding factor beta (cbfb) biological_unit             
357.1.1.1.1.1        1g3p          alignment  minor coat protein fragment (g3p) biological_unit           
358.1.1.1.1.1        1vcc          alignment  DNA topoisomerase i fragment                                
359.1.1.1.1.1        1h70A         alignment  ng,Ng-dimethylarginine dimethylaminohydrolase Mutant        
359.1.1.1.2.1        ____1jdw      alignment  l-arginine:glycine amidinotransferase fragment (transamidina
359.1.1.2.1.1        ___1g61A      alignment  translation initiation factor 6 (eif-6)                     
360.1.1.1.1.1        2occF         alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
361.1.1.1.1.1        1div          alignment  ribosomal protein l9 biological_unit                        
362.1.1.1.1.1        1avyB         alignment  fibritin fragment (gpwac m) Mutant biological_unit          
363.1.1.1.1.1        1qhkA         alignment  ribonuclease hi fragment (rnase hi)                         
364.1.1.1.1.1        1ceuA         alignment  hiv-1 regulatory protein n-terminal domain vpr fragment     
365.1.1.1.1.1        1bzkA         alignment  band 3 anion transport protein fragment                     
366.1.1.1.1.1        1a6jA         alignment  nitrogen regulatory iia protein (iia-nitrogen, enzyme iia-nt
366.1.1.1.2.1        ____1a3aA     alignment  mannitol-specific eii fragment                              
366.1.1.2.1.1        ___1hynP      alignment  band 3 anion transport protein (anion exchange protein 1, ae
367.1.1.1.1.1        1mnmA         alignment  mcm1 transcriptional regulator fragment (pheromone receptor 
368.1.1.1.1.1        4pah          alignment  phenylalanine hydroxylase fragment                          
369.1.1.1.1.1        1mxb          alignment  s-adenosylmethionine synthetase (mat, atp:l-methionine s-ade
370.1.1.1.1.1        1qlmA         alignment  methenyltetrahydromethanopterin cyclohydrolase Mutant       
371.1.1.1.1.1        1ffkL         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
371.1.2.1.1.1        __1ffkJ       alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
372.1.1.1.1.1        2nllB         alignment  retinoic acid receptor fragment (rxr-alpha) thyroid hormone 
373.1.1.1.1.1        2ahjA         alignment  nitrile hydratase (nhase) biological_unit                   
374.1.1.1.1.1        1bouA         alignment  4,5-dioxygenase alpha chain (liga) biological_unit 4,5-dioxy
375.1.1.1.1.1        1bolA         alignment  ribonuclease rh                                             
375.1.1.1.2.1        ____1bk7A     alignment  ribonuclease mc1 (rnase mc1)                                
376.1.1.1.1.1        1bzbA         alignment  calcitonin                                                  
377.1.1.1.1.1        1bku          alignment  calcitonin                                                  
378.1.1.1.1.1        1bm8          alignment  transcription factor mbp1 fragment (mcb (mlui cell-cyle box)
379.1.1.1.1.1        1xpa          alignment  xpa fragment                                                
380.1.1.1.1.1        1vfyA         alignment  phosphatidylinositol-3-phosphate binding fyve domain of prot
380.1.2.1.1.1        __1zbdB       alignment  rab-3a fragment (ras-related protein rab3a) Mutant rabphilin
380.2.1.1.1.1        _1f62A        alignment  transcription factor wstf fragment                          
381.1.1.1.1.1        1b8tA         alignment  crp1 fragment                                               
381.1.2.1.1.1        __1iml        alignment  cysteine rich intestinal protein (crip)                     
381.1.3.1.1.1        __1g47A       alignment  pinch protein fragment (particularly interesting new cys-his
382.1.1.1.1.1        1gatA         alignment  Erythroid transcription factor gata-1 (zinc-containing DNA-b
383.1.1.1.1.1        1ptq          alignment  protein kinase c delta type                                 
383.1.2.1.1.1        __1far        alignment  raf-1 fragment                                              
384.1.1.1.1.1        1e53A         alignment  tfiih p44 subunit fragment (btf2 p44 subunit)               
385.1.1.1.1.1        1chc          alignment  Equine herpes virus-1 (c3hc4, or ring domain) (NMR, 1 struct
385.1.2.1.1.1        __1rmd        alignment  rag1 fragment (v(d)j recombination activating protein 1)    
385.2.1.1.1.1        _1g25A        alignment  cdk-activating kinase assembly factor mat1 fragment (ring fi
386.1.1.1.1.1        1e4uA         alignment  transcriptional repressor not4 fragment                     
387.1.1.1.1.1        1ffkR         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
387.2.1.1.1.1        _1g2rA        alignment  hypothetical cytosolic protein                              
388.1.1.1.1.1        1fjfN         alignment  16s ribosomal RNA fragment of messenger RNA 30s ribosomal pr
389.1.1.1.1.1        1fp0A         alignment  kap-1 corepressor fragment (transcription intermediary facto
390.1.1.1.1.1        1jjdA         alignment  metallothionein (smta)                                      
391.1.1.1.1.1        1tgsI         alignment  Trypsinogen complex with porcine pancreatic secretory trypsi
391.1.2.1.1.1        __2ovo        alignment  Ovomucoid third domain                                      
391.1.3.1.1.1        __1tbrR       alignment  thrombin rhodniin                                           
392.1.1.1.1.1        1bor          alignment  transcription factor pml fragment                           
393.1.1.1.1.1        1bbg          alignment  pollen allergen 5                                           
394.1.1.1.1.1        1pnbA         alignment  napin bnib                                                  
395.1.1.1.1.1        1hth          alignment  cyclic parathyroid hormone fragment Mutant                  
396.1.1.1.1.1        1fdm          alignment  fd major coat protein (fd coat protein)                     
397.1.1.1.1.1        1gw4          alignment  apoa-i fragment (apolipoprotein a-i)                        
398.1.1.1.1.1        1hfeS         alignment  fe-only hydrogenase (smaller subunit) fe-only hydrogenase (l
399.1.1.1.1.1        1ron          alignment  neuropeptide y (npy)                                        
400.1.1.1.1.1        1f8pA         alignment  neuropeptide y (pnpy)                                       
401.1.1.1.1.1        1fvnA         alignment  neuropeptide y Mutant                                       
402.1.1.1.1.1        1pyiA         alignment  Pyrimidine pathway regulator 1 (ppr1) (residues 29 - 123) co
403.1.1.1.1.1        2leu          alignment  leucocin a                                                  
404.1.1.1.1.1        1ffkW         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
405.1.1.1.1.1        1ffkY         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
406.1.1.1.1.1        1qf8A         alignment  casein kinase ii fragment                                   
407.1.1.1.1.1        1g9lA         alignment  polyadenylate-binding protein 1 fragment (poly(a) binding pr
408.1.1.1.1.1        1ffkV         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
409.1.1.1.1.1        1diiC         alignment  p-cresol methylhydroxylase fragment (pcmh) p-cresol methylhy
409.1.2.1.1.1        __451c        alignment  Cytochrome c=551= (reduced)                                 
409.1.3.1.1.1        __1cc5        alignment  Cytochrome c=5= (oxidized)                                  
409.1.4.1.1.1        __1c52        alignment  cytochrome-c552                                             
409.1.5.1.1.1        __1ctj        alignment  cytochrome c6                                               
409.1.5.2.1.1        ___1e29A      alignment  cytochrome c549                                             
409.1.6.1.1.1        __2mtaC       alignment  Methylamine dehydrogenase complex with amicyanin and cytochr
409.1.7.1.1.1        __1ycc        alignment  Cytochrome c (isozyme 1) (reduced)                          
409.1.8.1.1.1        __1etpA       alignment  cytochrome c4                                               
409.1.8.1.2.1        ____1fcdC     alignment  Flavocytochrome c sulfide dehydrogenase (fcsd)              
409.1.8.2.1.1        ___1c53       alignment  Cytochrome c553                                             
409.2.1.1.1.1        _1dw0A        alignment  cytochrome c                                                
409.3.1.1.1.1        _1be3D        alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
410.1.1.1.1.1        1eb7A         alignment  cytochrome c551 peroxidase (cytochrome c peroxidase, ccp, di
411.1.1.1.1.1        1fct          alignment  Ferredoxin chloroplastic transit peptide sequence from the g
412.1.1.1.1.1        1pnbB         alignment  napin bnib                                                  
413.1.1.1.1.1        1pinA         alignment  peptidyl-prolyl cis-trans isomerase (pin1) ala-pro dipeptide
413.1.2.1.1.1        __1eq3A       alignment  peptidyl-prolyl cisTRANS ISOMERASE (PPIASE) fragment        
413.2.1.1.1.1        _1fkj         alignment  fk506 binding protein (fkbp12)                              
413.2.1.2.1.1        ___1fd9A      alignment  macrophage infectivity potentiator protein (mip, peptidyl-pr
414.1.1.1.1.1        3eipA         alignment  colicin e3 immunity protein                                 
415.1.1.1.1.1        1cby          alignment  delta-endotoxin cytb                                        
416.1.1.1.1.1        5hpgA         alignment  plasminogen fragment                                        
416.1.1.1.2.1        ____1bhtA     alignment  hepatocyte growth factor fragment (nk1)                     
416.1.1.2.1.1        ___1a0hA      alignment  meizothrombin fragment (desf1) d-phe-pro-arg (ppack)        
416.2.1.1.1.1        _1i8nA        alignment  anti-platelet protein                                       
417.1.1.1.1.1        1jotA         alignment  agglutinin                                                  
417.1.1.2.1.1        ___1vmoA      alignment  Vitelline membrane outer layer protein i                    
418.1.1.1.1.1        1e0lA         alignment  formin binding protein fragment                             
418.2.1.1.1.1        _1i5hW        alignment  ubiquitin ligase nedd4 fragment (rnedd4) amiloride-sensitive
418.3.1.1.1.1        _1i6cA        alignment  peptidyl-prolyl cis-trans isomerase nima- interacting 1 frag
419.1.1.1.1.1        1qk9A         alignment  methyl-cpg-binding protein 2 fragment (mbd)                 
419.2.1.1.1.1        _1d9nA        alignment  methyl-cpg-binding protein mbd1 fragment                    
420.1.1.1.1.1        1f94A         alignment  bucandin                                                    
420.1.1.1.1.1        ______1tgxA   alignment  Toxin gamma (cardiotoxin)                                   
420.1.2.1.1.1        __3ebx        alignment  Erabutoxin b                                                
420.1.3.1.1.1        __1cds        alignment  Cd59 complexed with glcnac-beta-1,4-(fuc-alpha-1,6)- glcnac-
420.1.4.1.1.1        __1bteA       alignment  activin receptor type ii fragment                           
420.1.5.1.1.1        __1es7B       alignment  bone morphogenetic protein-2 (bmp-2) bone morphogenetic prot
420.2.1.1.1.1        _1txb         alignment  toxin b (long neurotoxin)                                   
421.1.1.1.1.1        1idiA         alignment  alpha-bungarotoxin (long neurotoxin 1)                      
422.1.1.1.1.1        1pyaB         alignment  Pyruvoyl-dependent histidine decarboxylase (l-histidine carb
423.1.1.1.1.1        2cpl          alignment  Cyclophilin a                                               
423.2.1.1.1.1        _1es6A        alignment  matrix protein vp40 Mutant                                  
424.1.1.1.1.1        1fsiA         alignment  cyclic phosphodiesterase                                    
425.1.1.1.1.1        1at3A         alignment  herpes simplex virus type ii protease biological_unit       
425.1.1.1.2.1        ____1lay      alignment  cytomegalovirus protease (assemblin) Mutant                 
426.1.1.1.1.1        1cq3A         alignment  viral chemokine inhibitor fragment                          
427.1.1.1.1.1        1tocR         alignment  thrombin ornithodorin                                       
427.1.2.1.1.1        __1bpi        alignment  Bovine pancreatic trypsin inhibitor (bpti) (crystal form ii)
427.2.1.1.1.1        _1kigI        alignment  factor xa anticoagulant peptide (rtap)                      
428.1.1.1.1.1        1adn          alignment  N-ada 10 (DNA methylphosphotriester repair domain, residues 
429.1.1.1.1.1        1qauA         alignment  neuronal nitric oxide synthase (residues 1-130)             
429.1.1.2.1.1        ___1pdr       alignment  human discs large protein fragment (hdlg, dhr3 domain)      
429.1.1.3.1.1        ___1kwaA      alignment  hcaskLIN-2 PROTEIN fragment (hcask, glgf repeat, dhr) biolog
429.1.2.1.1.1        __1i16        alignment  interleukin 16 (lcf)                                        
430.1.1.1.1.1        1ubpB         alignment  urease (urea aminohydrolase) urease (urea aminohydrolase) ur
430.2.1.1.1.1        _1c5eA        alignment  head decoration protein (gpd, major capsid protein d)       
431.1.1.1.1.1        1g31A         alignment  gp31 biological_unit                                        
431.1.2.1.1.1        __1lepA       alignment  chaperonin-10 (ml10)                                        
432.1.1.1.1.1        1e01A         alignment  membrane-bound lytic murein transglycosylase d (mltd, murein
433.1.1.1.1.1        1jenB         alignment  s-adenosylmethionine decarboxylase (beta chain) (adometdc, s
434.1.1.1.1.1        1qklA         alignment  DNA-directed RNA polymerase ii 14.4 kd polypeptide (rpb6)   
435.1.1.1.1.1        1f6vA         alignment  DNA transposition protein fragment (mu b transposition prote
436.1.1.1.1.1        1egpA         alignment  eglin-c                                                     
436.2.1.1.1.1        _1hymA        alignment  hydrolyzed cucurbita maxima trypsin inhibitor v (cmti-v)    
436.3.1.1.1.1        _2sniI        alignment  Subtilisin novo complex with chymotrypsin inhibitor 2 (CI-2)
437.1.1.1.1.1        1nseA         alignment  nitric oxide synthase fragment                              
438.1.1.1.1.1        1emwA         alignment  s16 ribosomal protein                                       
439.1.1.1.1.1        3fib          alignment  fibrinogen gamma chain residues fragment                    
440.1.1.1.1.1        1bnkA         alignment  3-methyladenine DNA glycosylase (aag, anpg, mpg) DNA (5'- d(
441.1.1.1.1.1        1bwzA         alignment  diaminopimelate epimerase (dap epimerase)                   
442.1.1.1.1.1        1g57A         alignment  3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase
442.1.2.1.1.1        __1hruA       alignment  yrdc gene product (20.8 kda protein in aroe-smg intergenic r
443.1.1.1.1.1        2bbkL         alignment  Methylamine dehydrogenase (madh)                            
444.1.1.1.1.1        1mknA         alignment  midkine fragment                                            
445.1.1.1.1.1        1dfeA         alignment  l36 ribosomal protein                                       
446.1.1.1.1.1        1fwqA         alignment  guanine nucleotide exchange factor                          
447.1.1.1.1.1        2gliA         alignment  zinc finger protein gli1 (five-finger gli) DNA              
447.1.1.2.1.1        ___1aayA      alignment  zif268 zinc finger peptide fragment (ngfi-a, krox-24, egr1) 
447.1.2.1.1.1        __1tf6A       alignment  tfiiia fragment 5s ribosomal RNA gene fragment              
447.1.3.1.1.1        __2drpA       alignment  Tramtrack protein (two zinc-finger peptide) complexed with D
447.1.4.1.1.1        __1bbo        alignment  Human enhancer-binding protein mbp-1 mutant with cys 11 repl
447.2.1.1.1.1        _1zfd         alignment  swi5 fragment                                               
447.3.1.1.1.1        _1bhi         alignment  cre-bp1 fragment (atf-2) biological_unit                    
448.1.1.1.1.1        1yuiA         alignment  gaga-factor fragment deoxyribonucleic acid                  
449.1.1.1.1.1        2adr          alignment  adr1 fragment Mutant biological_unit                        
450.1.1.1.1.1        2gcc          alignment  aterf1 fragment                                             
450.2.1.1.1.1        _2bb8         alignment  integrase fragment                                          
450.3.1.1.1.1        _1ncs         alignment  transcriptional factor swi5 fragment (peptide m30f)         
451.1.1.1.1.1        1ba6          alignment  amyloid beta-peptide fragment Mutant                        
452.1.1.1.1.1        1aml          alignment  amyloid a4                                                  
453.1.1.1.1.1        1f5yA         alignment  low-density lipoprotein receptor fragment (ldl receptor)    
453.1.2.1.1.1        __1ajj        alignment  low-density lipoprotein receptor fragment (lr5)             
454.1.1.1.1.1        1a73A         alignment  intron 3 (i-ppo) encoded endonuclease (intron-encoded endonu
454.2.1.1.1.1        _1mhdA        alignment  smad3 fragment (smad n-domain) DNA                          
455.1.1.1.1.1        1bxiB         alignment  colicin e9 immunity protein colicin e9 fragment             
456.1.1.1.1.1        1tabI         alignment  Trypsin complex with bowman-Birk inhibitor (AB-I)           
457.1.1.1.1.1        1kptA         alignment  kp4 toxin (p4 toxin, kp4 killer toxin)                      
458.1.1.1.1.1        1kveB         alignment  smk toxin fragment                                          
459.1.1.1.1.1        1aiw          alignment  endoglucanase z fragment (cbdegz) Mutant biological_unit    
459.2.1.1.1.1        _1ed7A        alignment  chitinase a1 fragment ((chbd-chia1))                        
460.1.1.1.1.1        1qi7A         alignment  n-glycosidase                                               
460.1.1.1.2.1        ____1mrj      alignment  Alpha-trichosanthin complexed with adenine                  
460.1.1.1.3.1        ____1dm0A     alignment  shiga toxin a subunit shiga toxin b subunit                 
461.1.1.1.1.1        7rsa          alignment  Ribonuclease a (phosphate-free)                             
461.1.1.2.1.1        ___1onc       alignment  P-30 protein                                                
462.1.1.1.1.1        1bs4A         alignment  peptide deformylase (pdf) biological_unit                   
463.1.1.1.1.1        1hcgB         alignment  Blood coagulation factor xa                                 
463.2.1.1.1.1        _1apq         alignment  complement protease c1r fragment                            
463.3.1.1.1.1        _1emn         alignment  fibrillin fragment                                          
463.3.2.1.1.1        __1dx5I       alignment  thrombin light chain (coagulation factor ii) thrombin heavy 
463.4.1.1.1.1        _1i0uA        alignment  low density lipoprotein receptor fragment (ldl receptor)    
464.1.1.1.1.1        1fsb          alignment  p-selectin fragment                                         
464.2.1.1.1.1        _1edmB        alignment  factor ix fragment                                          
464.3.1.1.1.1        _1xdtR        alignment  diphtheria toxin (dt) biological_unit heparin-binding epider
464.4.1.1.1.1        _1egf         alignment  Epidermal growth factor (egf) (NMR, 16 structures)          
464.5.1.1.1.1        _3tgf         alignment  Transforming growth factor-alpha (NMR, 4 structures)        
465.1.1.1.1.1        1b9wA         alignment  merozoite surface protein 1 fragment (msp1-19, msa1-19) hexa
466.1.1.1.1.1        1ryc          alignment  cytochrome c peroxidase Mutant                              
466.1.1.1.2.1        ____1arv      alignment  peroxidase                                                  
466.1.1.1.3.1        ____1bgp      alignment  barley grain peroxidase                                     
467.1.1.1.1.1        1mhlC         alignment  myeloperoxidase                                             
467.1.1.1.2.1        ____1cqeA     alignment  prostaglandin h2 synthase-1 (cyclooxygenase 1, cox-1, prosta
468.1.1.1.1.1        1fbr          alignment  fibronectin                                                 
468.1.2.1.1.1        __1e8bA       alignment  fibronectin fragment                                        
468.1.3.1.1.1        __1qgbA       alignment  fibronectin fragment                                        
468.1.4.1.1.1        __1tpg        alignment  t-plasminogen activator f1-g Mutant                         
469.1.1.1.1.1        1pdc          alignment  Seminal fluid protein pdc-109 (domain b) (NMR, best structur
470.1.1.1.1.1        1ghqB         alignment  complement c3 fragment Mutant cr2CD121c3dEPSTEIN-BARR VIRUS 
470.1.1.2.1.1        ___1cklB      alignment  cd46 fragment (membrane cofactor protein (mcp))             
470.1.1.3.1.1        ___1e5gA      alignment  complement control protein fragment (vcp, sp35)             
470.1.1.4.1.1        ___1qubA      alignment  human beta2-glycoprotein i fragment                         
470.1.2.1.1.1        __1hfh        alignment  Factor h, 15th and 16th c-module pair (NMR, minimized averag
471.1.1.1.1.1        1klo          alignment  laminin fragment                                            
472.1.1.1.1.1        1extA         alignment  tumor necrosis factor receptor fragment                     
472.1.2.1.1.1        __1d4vA       alignment  tnf-related apoptosis inducing ligand fragment (trail) death
473.1.1.1.1.1        1hx2A         alignment  bsti (bombina skin trypsin inhibitor)                       
473.2.1.1.1.1        _1eaiC        alignment  elastase biological_unit chymotrypsinELASTASE ISOINHIBITOR 1
474.1.1.1.1.1        1bxm          alignment  beta-cryptogein (beta-elicitin of phytophthora cryptogea) Mu
475.1.1.1.1.1        1fwoA         alignment  oryzain beta chain fragment Mutant                          
475.2.1.1.1.1        _1g26A        alignment  granulin a fragment (hga) Mutant                            
476.1.1.1.1.1        1zaq          alignment  thrombomodulin (tm4)                                        
477.1.1.1.1.1        1vpfA         alignment  vascular endothelial growth factor fragment (vegf, vascular 
477.1.1.2.1.1        ___1pdgA      alignment  Platelet-derived growth factor bb                           
477.1.2.1.1.1        __1hcnB       alignment  Human chorionic gonadotropin                                
477.1.3.1.1.1        __1hcnA       alignment  Human chorionic gonadotropin                                
477.1.4.1.1.1        __1agqA       alignment  glial cell-derived neurotrophic factor (gdnf) biological_uni
477.1.5.1.1.1        __2tgi        alignment  Transforming growth factor-beta two (tgf-b2)                
477.2.1.1.1.1        _1bndA        alignment  brain derived neurotrophic factor (bdnf) neurotrophin 3 (nt3
477.2.2.1.1.1        __1aocA       alignment  coagulogen                                                  
477.2.3.1.1.1        __1jpyB       alignment  interleukin 17f fragment (il-17f)                           
478.1.1.1.1.1        1pmc          alignment  proteinase inhibitor pmp-c (lmci ii)                        
479.1.1.1.1.1        1mypB         alignment  Myeloperoxidase                                             
480.1.1.1.1.1        1d2vA         alignment  myeloperoxidase fragment myeloperoxidase fragment           
481.1.1.1.1.1        1skz          alignment  antistasin (factor xa inhibitor) Mutant                     
481.2.1.1.1.1        _1ejaB        alignment  trypsin bdellastasin                                        
481.3.1.1.1.1        _1bx7         alignment  hirustasin biological_unit                                  
482.1.1.1.1.1        2vgh          alignment  vascular endothelial growth factor-165 fragment (vegf-165)  
483.1.1.1.1.1        1i25A         alignment  huwentoxin-ii (hwtx-ii)                                     
484.1.1.1.1.1        1jbiA         alignment  cochlin fragment (coch-5b2)                                 
485.1.1.1.1.1        1tbgE         alignment  transducin fragment (guanine nucleotide-binding protein g) t
486.1.1.1.1.1        1qndA         alignment  nonspecific lipid-transfer protein (scp-2, nsl-tp, sterol ca
487.1.1.1.1.1        1qkfA         alignment  30s ribosomal protein s19                                   
488.1.1.1.1.1        1fjrA         alignment  methuselah ectodomain fragment                              
489.1.1.1.1.1        1i5jA         alignment  apolipoprotein cii (apoc-ii)                                
490.1.1.1.1.1        1hph          alignment  Human parathyroid hormone fragment 1 - 37 (hpth(1-37)) (NMR,
491.1.1.1.1.1        1bwx          alignment  parathyroid hormone fragment                                
492.1.1.1.1.1        1ce3A         alignment  api fragment                                                
493.1.1.1.1.1        1ef1C         alignment  moesin fragment moesin fragment                             
494.1.1.1.1.1        1eciA         alignment  ectatomin                                                   
495.1.1.1.1.1        1bvb          alignment  cytochrome c-554 biological_unit                            
496.1.1.1.1.1        1ponB         alignment  troponin c fragment                                         
496.2.1.1.1.1        _1ponA        alignment  troponin c fragment                                         
497.1.1.1.1.1        1ctdA         alignment  Troponin c site iii - site iii homodimer (NMR, 7 structures)
498.1.1.1.1.1        3caoA         alignment  cytochrome c3                                               
498.1.2.1.1.1        __19hcA       alignment  nine-haem cytochrome c                                      
498.1.3.1.1.1        __3cyr        alignment  cytochrome c3                                               
498.1.4.1.1.1        __1new        alignment  cytochrome c551.5 (cytochrome c7, triheme cytochrome)       
499.1.1.1.1.1        6prcC         alignment  photosynthetic reaction center                              
500.1.1.1.1.1        1awj          alignment  itk fragment (il-2-inducible t-cell kinase) biological_unit 
501.1.1.1.1.1        1i7xB         alignment  beta-catenin fragment epithelial-cadherin fragment (e-cadher
502.1.1.1.1.1        1d66A         alignment  Gal4 (residues 1 - 65) complex with 19mer DNA               
502.1.2.1.1.1        __1zmeC       alignment  DNA proline utilization transcription activator fragment (pu
502.2.1.1.1.1        _2alcA        alignment  ethanol regulon transcriptional activator fragment          
503.1.1.1.1.1        1hwtC         alignment  cyc7 DNA fragment (uas cyc7) biological_unit heme activator 
504.1.1.1.1.1        2occG         alignment  cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductas
505.1.1.1.1.1        1bzg          alignment  parathyroid hormone-related protein fragment                
506.1.1.1.1.1        1gh9A         alignment  8.3 kda protein (gene mth1184)                              
507.1.1.1.1.1        1rb9          alignment  rubredoxin                                                  
508.1.1.1.1.1        1dxgA         alignment  desulforedoxin biological_unit                              
509.1.1.1.1.1        1msi          alignment  type iii antifreeze protein isoform hplc 12 (type iii antifr
510.1.1.1.1.1        1vtx          alignment  delta-atracotoxin-hv1 (versutoxin)                          
510.2.1.1.1.1        _1hykA        alignment  agouti related protein fragment                             
510.3.1.1.1.1        _1boeA        alignment  insulin-like growth factor-binding protein-5 (igfbp-5) fragm
510.4.1.1.1.1        _1eit         alignment  mu-agatoxin-i (mu-aga-i)                                    
510.5.1.1.1.1        _1dl0A        alignment  j-atracotoxin-hv1c                                          
510.6.1.1.1.1        _1c4eA        alignment  gurmarin                                                    
510.7.1.1.1.1        _1agg         alignment  omega-agatoxin-ivb (omega-aga-ivb)                          
510.8.1.1.1.1        _1imt         alignment  intestinal toxin 1 (mit1)                                   
510.8.2.1.1.1        __1lpbA       alignment  Lipase complexed with colipase and inhibited by undecane pho
510.9.1.1.1.1        _2cbh         alignment  C-terminal domain of cellobiohydrolase i (CT-CBH i) (NMR,41 
511.1.1.1.1.1        1ag7          alignment  conotoxin gs                                                
512.1.1.1.1.1        1qk7A         alignment  selenocosmia huwena lectin-i                                
512.2.1.1.1.1        _1qk6A        alignment  huwentoxin-i                                                
512.3.1.1.1.1        _1d1hA        alignment  hanatoxin type 1                                            
512.4.1.1.1.1        _4cpaI        alignment  Carboxypeptidase a=alpha= (cox) complex with potato carboxyp
513.1.1.1.1.1        1qfdA         alignment  alpha-amylase inhibitor                                     
514.1.1.1.1.1        1g1pA         alignment  conotoxin evia                                              
515.1.1.1.1.1        1c6wA         alignment  maurocalcin (mca)                                           
516.1.1.1.1.1        1axh          alignment  atracotoxin-hvi (actx-hvi)                                  
517.1.1.1.1.1        1hy9A         alignment  cocaine and amphetamine regulated transcript protein fragmen
518.1.1.1.1.1        1dkcA         alignment  antifungal peptide (pafp-s)                                 
519.1.1.1.1.1        1gpt          alignment  Gamma-1-h thionin (NMR, 8 structures)                       
519.1.2.1.1.1        __1ayj        alignment  antifungal protein 1 (rs-afp1)                              
519.1.3.1.1.1        __1brz        alignment  brazzein biological_unit                                    
519.1.4.1.1.1        __1aho        alignment  toxin ii                                                    
519.2.1.1.1.1        _1sco         alignment  scorpion toxin osk1 (lenatoxin)                             
519.3.1.1.1.1        _1fjnA        alignment  defensin mgd-1                                              
519.4.1.1.1.1        _2pta         alignment  pandinus toxin k-alpha fragment (pitx-ka, a-ktx5.1) biologic
519.5.1.1.1.1        _1cmr         alignment  charybdotoxin, alpha chimera Mutant                         
520.1.1.1.1.1        1ica          alignment  Insect defensin a (NMR, 10 structures)                      
521.1.1.1.1.1        1pnh          alignment  Scorpion toxin (po5-nh2) analog with high affinity for apami
522.1.1.1.1.1        1sis          alignment  Scorpion insectotoxin i5a (NMR, 10 structures)              
523.1.1.1.1.1        1by2          alignment  mac-2 binding protein fragment (tumor-associated antigen 90k
524.1.1.1.1.1        1fleI         alignment  elastase elafin (skin-derived antileukoproteinase (skalp))  
525.1.1.1.1.1        1ha9A         alignment  trypsin inhibitor ii (mcoti-ii)                             
526.1.1.1.1.1        1azh          alignment  cellobiohydrolase i fragment (cbd) Mutant                   
527.1.1.1.1.1        1ewsA         alignment  rk-1 defensin (alpha-defisin)                               
528.1.1.1.1.1        1adx          alignment  thrombomodulin fragment (tmegf5)                            
529.1.1.1.1.1        1hev          alignment  Hevein (NMR, 6 structures)                                  
529.1.2.1.1.1        __9wgaA       alignment  Wheat germ agglutinin (isolectin 2)                         
530.1.1.1.1.1        1e4sA         alignment  beta-defensin 1 fragment (hbd-1)                            
530.1.2.1.1.1        __1fd3A       alignment  beta-defensin 2 (hbd-2, skin-antimicrobial peptide 1)       
530.2.1.1.1.1        _1bnb         alignment  bovine neutrophil beta-defensin 12                          
530.3.1.1.1.1        _1b8wA        alignment  defensin-like peptide 1                                     
531.1.1.1.1.1        1sh1          alignment  Neurotoxin i (sh i) (NMR, minimized average structure)      
531.2.1.1.1.1        _1ahl         alignment  anthopleurin-a (ap-a)                                       
531.3.1.1.1.1        _2bds         alignment  BDS-I (NMR, 42 simulated annealing structures)              
532.1.1.1.1.1        1dbuA         alignment  ybak (hi1434)                                               
533.1.1.1.1.1        1pi2          alignment  Bowman-Birk proteinase inhibitor PI-II                      
533.1.2.1.1.1        __1c2aA       alignment  bowman-birk trypsin inhibitor                               
533.2.1.1.1.1        _1bi6H        alignment  bromelain inhibitor vi                                      
534.1.1.1.1.1        1by6A         alignment  apolipoprotein c-ii fragment                                
535.1.1.1.1.1        1cfi          alignment  coagulation factor ix fragment                              
536.1.1.1.1.1        1icfI         alignment  cathepsin l cathepsin l invariant chain fragment (ii fragmen
537.1.1.1.1.1        1aty          alignment  F1fo atp synthase subunit c (residues 9 - 26, 52 - 79) mutan
538.1.1.1.1.1        2ltnB         alignment  Pea lectin                                                  
539.1.1.1.1.1        1daqA         alignment  endoglucanase ss fragment (cels)                            
540.1.1.1.1.1        1dqcA         alignment  tachycitin                                                  
541.1.1.1.1.1        1fh1A         alignment  nodulation protein f (nodf)                                 
542.1.1.1.1.1        1cd3B         alignment  scaffolding protein gpd capsid protein gpf spike protein gpg
543.1.1.1.1.1        1jqsB         alignment  50s ribosomal protein l11 elongation factor g fragment (ef-g
544.1.1.1.1.1        1ce4A         alignment  v3 loop of hiv-1 envelope protein biological_unit           
545.1.1.1.1.1        1jjsA         alignment  creb-binding protein                                        
546.1.1.1.1.1        1du2A         alignment  DNA polymerase iii fragment                                 
547.1.1.1.1.1        1mmsA         alignment  ribosomal protein l11 23s ribosomal RNA fragment Mutant     
548.1.1.1.1.1        1qloA         alignment  herpes simplex virus protein icp47 (immediate-early protein 
549.1.1.1.1.1        1gc1G         alignment  envelope protein gp120 fragment Mutant cd4 fragment Mutant a
550.1.1.1.1.1        1hnr          alignment  H-ns (DNA-binding domain) (NMR, minimized average structure)
551.1.1.1.1.1        1rip          alignment  Ribosomal protein s17 (NMR, 6 structures)                   
552.1.1.1.1.1        1e8rA         alignment  endo-1,4-beta-xylanase fragment                             
553.1.1.1.1.1        1tvs          alignment  Transactivator protein (tat) (tat eiavy) (NMR, 8 structures)
554.1.1.1.1.1        1npoA         alignment  neurophysin ii (bnpii) oxytocin (ot)                        
555.1.1.1.1.1        1htrP         alignment  Progastricsin (pepsinogen c)                                
556.1.1.1.1.1        1co4A         alignment  activator of metallothionein 1 fragment (amt1)              
557.1.1.1.1.1        1qgwA         alignment  cryptophytan phycoerythrin (alpha-1 chain) biological_unit c
558.1.1.1.1.1        1hhnA         alignment  calreticulin fragment                                       
559.1.1.1.1.1        1exkA         alignment  dnaj protein fragment                                       
560.1.1.1.1.1        1apj          alignment  fibrillin fragment                                          
561.1.1.1.1.1        1tac          alignment  tat protein (transactivating regulatory protein) Mutant     
562.1.1.1.1.1        1pyaA         alignment  Pyruvoyl-dependent histidine decarboxylase (l-histidine carb
563.1.1.1.1.1        7apiB         alignment  Modified alpha=1=-Antitrypsin (modified alpha=1=-Proteinase 
563.2.1.1.1.1        _1as4B        alignment  antichymotrypsin fragment (act) Mutant                      
563.3.1.1.1.1        _1hleB        alignment  Horse leukocyte elastase inhibitor (hlei)                   
564.1.1.1.1.1        1e0aB         alignment  g25k gtp-binding protein, placental isoform (gp), cdc42 homo
565.1.1.1.1.1        1ceeB         alignment  gtp-binding rho-like protein fragment (cell division cycle 4
566.1.1.1.1.1        1ckuA         alignment  hipip                                                       
566.1.1.2.1.1        ___1pih       alignment  High potential iron sulfur protein insertion mutant with ala
566.2.1.1.1.1        _1isuA        alignment  High-potential iron-sulfur protein (hipip)                  
567.1.1.1.1.1        1fv5A         alignment  first zinc finger of u-shaped fragment                      
567.2.1.1.1.1        _1fu9A        alignment  u-shaped transcriptional cofactor fragment                  
568.1.1.1.1.1        1puc          alignment  p13suc1 (p13) ec                                            
569.1.1.1.1.1        1ppbL         alignment  Alpha-thrombin complex with d-phe-pro-arg chloromethylketone
570.1.1.1.1.1        1mkcA         alignment  midkine fragment                                            
571.1.1.1.1.1        1jsuC         alignment  cyclin-dependent kinase-2 (cdk2) Mutant cyclin a fragment p2
572.1.1.1.1.1        1ffkX         alignment  23s rrna 5s rrna ribosomal protein l2 (50s ribosomal protein
573.1.1.1.1.1        1qqp4         alignment  genome polyprotein (fmdv) genome polyprotein (fmdv) genome p
574.1.1.1.1.1        1qjkA         alignment  metallothionein fragment                                    
575.1.1.1.1.1        1rypB         alignment  20s proteasome Mutant biological_unit                       
576.1.1.1.1.1        1ryp2         alignment  20s proteasome Mutant biological_unit                       
577.1.1.1.1.1        1ryp1         alignment  20s proteasome Mutant biological_unit                       
578.1.1.1.1.1        1qqvA         alignment  villin headpiece domain fragment                            
579.1.1.1.1.1        1roo          alignment  shk toxin (shktx)                                           
580.1.1.1.1.1        1bgk          alignment  bgk (potassium channel toxin bgk)                           
581.1.1.1.1.1        1cwxA         alignment  hepatitis c virus capsid protein fragment                   
582.1.1.1.1.1        1cfh          alignment  Coagulation factor ix (the gla and aromatic amino acid stack
583.1.1.1.1.1        1cf4B         alignment  cdc42 homolog Mutant activated p21cdc42hs kinase fragment   
584.1.1.1.1.1        1c2uA         alignment  synthetic peptide analogue of shk toxin Mutant              
585.1.1.1.1.1        1tbaA         alignment  transcription initiation factor iid 230k chain fragment (taf
586.1.1.1.1.1        1bl1          alignment  parathyroid hormone receptor fragment                       
587.1.1.1.1.1        1bh7          alignment  band 3 fragment                                             
588.1.1.1.1.1        1dqbA         alignment  thrombomodulin fragment                                     
589.1.1.1.1.1        1dmc          alignment  Cd-6 metallothionein-1 (cd-6 mt) (alpha domain) (NMR, minimi
590.1.1.1.1.1        1devB         alignment  mad (mothers against decapentaplegic, drosophila) homolog 2 
591.1.1.1.1.1        1d6gA         alignment  cholecystokinin type a receptor fragment (cck-a-receptor) ch
592.1.1.1.1.1        2bpa3         alignment  Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four
593.1.1.1.1.1        1tvt          alignment  Transactivator protein (tat, tat eiavy) (NMR, 6 structures) 
594.1.1.1.1.1        1tmf4         alignment  Theiler's murine encephalomyelitis virus coat protein (bean 
595.1.1.1.1.1        1tiv          alignment  hiv-1 transactivator protein (tat protein) Mutant           
596.1.1.1.1.1        1rypF         alignment  20s proteasome Mutant biological_unit                       
597.1.1.1.1.1        1rypE         alignment  20s proteasome Mutant biological_unit                       
598.1.1.1.1.1        1rypD         alignment  20s proteasome Mutant biological_unit                       
599.1.1.1.1.1        1rypC         alignment  20s proteasome Mutant biological_unit                       
600.1.1.1.1.1        1mfs          alignment  hiv-1 nucleocapsid protein fragment                         
601.1.1.1.1.1        1a1tA         alignment  nucleocapsid protein sl3 stem-loop RNA                      
602.1.1.1.1.1        1aaf          alignment  Hiv-1 nucleocapsid protein (mn isolate) (NMR, 20 structures)
603.1.1.1.1.1        4rhv4         alignment  Rhinovirus 14 (HRV14)                                       
604.1.1.1.1.1        4mt2          alignment  Metallothionein isoform ii                                  
605.1.1.1.1.1        3kinB         alignment  kinesin heavy chain fragment                                
606.1.1.1.1.1        2prgC         alignment  peroxisome proliferator activated receptor gamma fragment (e
607.1.1.1.1.1        2pde          alignment  Dihydrolipoamide acetyltransferase (e2p) subunit of the pyru
608.1.1.1.1.1        2mrb          alignment  Cd-7 metallothionein-2a (beta domain) (NMR)                 
609.1.1.1.1.1        2mev4         alignment  Mengo encephalomyocarditis virus coat protein               
610.1.1.1.1.1        1fvl          alignment  flavoridin                                                  
611.1.1.1.1.1        1kst          alignment  Kistrin (NMR, 8 structures)                                 
612.1.1.1.1.1        1be3I         alignment  cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductas
613.1.1.1.1.1        1dsvA         alignment  nucleic acid binding protein p14 fragment                   
614.1.1.1.1.1        1cl4A         alignment  gag polyprotein fragment Mutant biological_unit             
615.1.1.1.1.1        1b35D         alignment  cricket paralysis virus, vp1 (crpv) biological_unit cricket 
616.1.1.1.1.1        1bev4         alignment  bovine enterovirus coat proteins vp1 to vp4                 
617.1.1.1.1.1        1pvc4         alignment  poliovirus type 3, sabin strain                             
618.1.1.1.1.1        1mhu          alignment  Cd-7 metallothionein-2 (alpha domain) (NMR)                 
619.1.1.1.1.1        1dfsA         alignment  metallothionein-1 fragment                                  
620.1.1.1.1.1        1aoo          alignment  ag-metallothionein (ag-mt) biological_unit                  
621.1.1.1.1.1        1a6bB         alignment  DNA (5'-d(ApCpGpCpC)-3') zinc finger protein ncp10 fragment 
622.1.1.1.1.1        4htcI         alignment  Alpha-thrombin complex with recombinant hirudin (variant 2, 
623.1.1.1.1.1        1dec          alignment  Decorsin (NMR, 25 structures)                               
624.1.1.1.1.1        1e0fI         alignment  thrombin thrombin fragment (factor iia) haemadin fragment   
625.1.1.1.1.1        2pspA         alignment  porcine pancreatic spasmolytic polypeptide (psp)            
626.1.1.1.1.1        1edsA         alignment  rhodopsin fragment                                          
627.1.1.1.1.1        1edxA         alignment  rhodopsin fragment                                          
628.1.1.1.1.1        1eesB         alignment  gtp-binding protein fragment (cdc42hs) p21-activated kinase 
629.1.1.1.1.1        1fqjC         alignment  chimera of guanine nucleotide-binding protein g(t), alpha-1 
630.1.1.1.1.1        1fre          alignment  nuclear factor xnf7 fragment                                
631.1.1.1.1.1        1g3jB         alignment  beta-catenin armadillo repeat region tcf3-cbd (catenin bindi
632.1.1.1.1.1        1h7dA         alignment  aminolevulinic acid synthase 2, erythroid (amino levulinate 
633.1.1.1.1.1        1i7wB         alignment  beta-catenin fragment epithelial-cadherin fragment (e-cadher
634.1.1.1.1.1        1jfwA         alignment  tat protein (transactivating regulatory protein)            
635.1.1.1.1.1        1ktx          alignment  Kaliotoxin (ktx) (NMR, 11 structures)                       
636.1.1.1.1.1        1qa4A         alignment  hiv-1 nef anchor domain (2-57)                              
637.1.1.1.1.1        1qa5A         alignment  myristoylated hiv-1 nef anchor domain (myristate- gly2 to tr

Created Tue Oct 30 03:00:55 GMT 2001 for dali on jura