>cd00399 {|0(0)|} RNAP_largest_subunit_N MSPEEIRKWSVAKVIKPetidnrtlkaergg------------------kydprlgsidrcekCgTCgtg-lndCPGHFG HIELAKPVFHVGFIKKVPSFLG---------------------------------------------------------- --------------------------------------------------PEWMILTCLPVPPPCLRPSV---------- -----------------------------------------IIEERWRl-lQEHVDTYLDngiagqpqt-qksgrplrSL AQRLKGKEGRFRGNLmGKRVDFSGRSVISPDPNLRLDQVGVPKSIALTL------------------------------- ----------------------------------------------DGDPVLFNRQPslHKLSIMAHRVRVLPg-STFRL NPLVCSPYNADFDGDEMNLHVPQSEEARAEARELMLVPNNILSPQNGEPLIGLSQDTLLGAYLLTL-------------- -------------------------------GKQIVSAALP--------------------------------------- ------------------GGLLHTVTRElgpEKAAKLLSNLQRVGFVFLTTsgfsvgigdviddgviPEEKTELIEEAKK KVDEVEEAFQAGlltaqegmtle-------------eslednildfLNEARDKAGSAASVnldl-------vskfNSIYV MAMSGAKGSFINIRQMSACVGQQSVEGKriprgfsdrtlp-------------hfskddyspeakGFIRNSFLEGLTPLE YFFHAMGGREGLVDTAVKtaeSGYLQRRLVKALEDLVVHYD >cd01435 {|4(0)|} RNAP_I_RPA1_N YSAEEIRKLSVKEITNPvtfdslghpvpggl-------------------ydpalgpldkddiCsTCgln-ylnCPGHFG HIELPLPVYNPLFFDLLYKLLRgscfychrfriskwevklfv-------------------------------------- ------------------------------aklklldkgllveaaeldfgYDMFFLDVLLVPPNRFRPPSflgdkvfenp qnvllskilkdnqqirdllasmrqaesqskldlisgktnseKLINAWLq-lQSAVNELFDstkapks-----gkksppGI KQLLEKKEGLFRMNMmGKRVNYAARSVISPDPFIETNEIGIPLVFAKKLtfpepvtpfnveelrqavingpdvypganai ededgrlillsalseerrkalaklllllssaklllngpkkvyrhllDGDVVLLNRQPtlHKPSIMAHKVRVLPgeKTLRL HYANCKSYNADFDGDEMNLHFPQSELARAEAYYIASTDNQYLVPTDGKPLRGLIQDHVVSGVLLTSrdtfftreeyqqlv yaalrplftsdkdgrikllppailkpkplwtGKQVISTILKnlipgnapllnlsgkkktkkkvgggkwgggseesqviir ngelltgvldksqfgasaYGLVHAVYELyggETAGKLLSALGRLFTAYLQMrgftcgiedllltpkaDEKRRKILRKAKK LGLEAAAEFLGL----------------------------------KLNKVTSSIIKACLpkgll-----kpfpeNNLQL MVQSGAKGSMVNASQISCLLGQQELEGRrvplmvsgktlp-------------sfppydtspragGFITDRFLTGIRPQE YFFHCMAGREGLIDTAVKtsrSGYLQRCLIKHLEGLKVNYD >cd01609 {|10(1)|} RNAP_beta'_N ASPEQIRSWSHGEVTKPetinyrtlkpekdglfcerifgptkdyecacgkykrirykgiicdrCgVEvtr-skvRRERMG HIELAAPVAHIWFFKGLPSRIGllldlspkdlervi-------------------------------------------- -------------------------------------yfvvesfrksgnrPEWMILTVLPVIPPDLRPMVqldggrfats dlndlyrrv--------------inrnnrlkkllelgapeiIVRNEKRm-lQEAVDALIDngrrgkpvt-gannrplkSL SDMLKGKQGRFRQNLlGKRVDYSGRSVIVVGPELKLHQCGLPKEMALELfkpfvirelierglapniks----------- --------------------------akkmierkdpevwdileeviKGHPVLLNRAPtlHRLGIQAFEPVLIEg-KAIQL HPLVCTAFNADFDGDQMAVHVPLSLEAQAEARVLMLSSNNILSPASGKPIVTPSQDMVLGLYYLTKerkgdkgegi---- ----------------------iettvgrviFNEILPEGLPfinktl--------------------------------- -------------kkkvlKKLINECYDRyglEETAELLDDIKELGFKYATRsgisis----iddivvPPEKKEIIKEAEE KVKEIEKQYEKGllteeer--------------------ynkvieiWTEVTEKVADAMMKnldk--------dpfNPIYM MADSGARGSKSQIRQLAGMRGLMAKPSGki---------------------------------ieLPIKSNFREGLTVLE YFISTHGARKGLADTALKtadSGYLTRRLVDVAQDVIVTEE >cd02582 {|11(29)|} RNAP_archeal_A' LSPEEIRKMSVVEIITPdtydedgypieggl-------------------mdprlgviepglrCkTCgnt-ageCPGHFG HIELARPVIHVGFAKHIYDLLRatcrscgrillpeeeiekylerirrlkekwpelvkrviekvkkkakkrkvcphcgapq ykiklekpttfyeekeegevkltpseirerlekipdedlellgidpktarPEWMVLTVLPVPPVTVRPSItletgersed dlthklvdi--------------irinqrlkenieagapqlIIEDLWDl-lQYHVTTYFDneipgipparhrsgrplkTL AQRLKGKEGRFRGNLsGKRVNFSARTVISPDPNLSINEVGVPEDIAKELtvpervtewniekmrklvlngpdkwpganyv i-------------rpdgrrirlryvnreelaerlepgwiverhliDGDIVLFNRQPslHRMSIMAHRVRVLPg-KTFRL NLAVCPPYNADFDGDEMNLHVPQSEEARAEARELMLVQEHILSPRYGGPIIGGIQDYISGAYLLTRkttlftkeealqll saag---------ydgllpepailepkplwtGKQLFSLFLPkdlnfegkakvcsgcseckdedcpnd------gyvvikn gkllegvidkkaigaeqpGSLLHRIAKEygnEVARRFLDSVTRLAIRFIELrgftigiddedipeeaRKEIEEIIKEAEK KVYELIEQYKNGeleplpgrtle-------------etlemkimqvLGKARDEAGKVASKyld----------pfNNAVI MARTGARGSMLNLTQMAACLGQQSVRGErinrgyrnrtlp-------------hfkpgdlgpearGFVRSSFRDGLSPTE FFFHAMGGREGLVDTAVRtsqSGYMQRRLINALQDLYVEYD >cd02583 {|0(4)|} RNAP_III_RPC1_N LSPEDIIRLSEVEVTNRnlydietrkplpyg------------------vldprlgtsdkdgiCeTCgln-ladCVGHFG YIKLELPVFHIGYFKAIINILQcicktcsrvllpeeekrkflkrlrrpnldnlqkkalkkkilekckk------------ -----vrkcphcgllkkaqedlnplkvlnlfknippedvelllmnplagrPENLILTRIPVPPLCIRPSVvmdeksgtne ddltvklse-------------iiflndvikkhlekgaktqKIMEDWDf-lQLQCALYINselpglpls-mqpkkpirGF CQRLKGKQGRFRGNLsGKRVDFSGRTVISPDPNLRIDQVGVPEHVAKILtypervtrynieklrklvlngpdvhpganfv ik------------rdggkkkflkygnrrkiarelkigdiverhleDGDIVLFNRQPslHRLSIMAHRAKVMPw-RTFRF NECVCTPYNADFDGDEMNLHVPQTEEARAEALELMGVKNNLVTPRNGEPLIAATQDFLTASYLLTSkdvffdraqfcqlc symldg------eikidlpppailkpvelwtGKQIFSLLLRpnkkspvlvnleakeksytkkspdmcp---ndgyvvirn sellcgrldkstlgsgskNSLFYVLLRDygpEAAAAAMNRLAKLSSRWLSNrgfsigiddvtpskelLKKKEELVDNGYA KCDEYIKQYKKGklelqpgctae-------------qtleakisgeLSKIREDAGKACLKelh----------ksNSPLI MALCGSKGSNINISQMIACVGQQIISGKripngfedrtlp-------------hfprnsktpaakGFVANSFYSGLTPTE FFFHTMSGREGLVDTAVKtaeTGYMQRRLMKALEDLSVQYD >cd02733 {|7(0)|} RNAP_II_RPB1_N LSPDEIRAMSVAEIEHPetyengggpklggl-------------------ndprmgtidrnsrCqTCggd-mkeCPGHFG HIELAKPVFHIGFLTKILKILRcvckrelsaervleifkr---------------------------------------- ---------------------------------isdedcrilgfdpkfsrPDWMILTVLPVPPPAVRPSVvmdgsarsed dlthkladi--------------ikannqlkrqeqngapahIIEEDEQl-lQFHVATYMDneipglpqatqksgrplkSI RQRLKGKEGRIRGNLmGKRVDFSARTVITPDPNLELDQVGVPRSIAMNLtfpeivtpfnidrlqelvrngpneypgakyi i--------------rddgeridlrylkkasdlhlqygyiverhlqDGDVVLFNRQPslHKMSMMGHRVKVLPy-STFRL NLSVTTPYNADFDGDEMNLHVPQSLETRAELKELMMVPRQIVSPQSNKPVMGIVQDTLLGVRKLTKrdtflekdqvmnll mwlpd--------wdgkipqpailkpkplwtGKQIFSLIIPkinnlirssshhdgdkkwispgdt----------kviie ngellsgilckktvgassGGLIHVIWLEygpEAARDFIGNIQRVVNNWLLHngfsigigdtiadketMKKIQETIKKAKR DVIKLIEKAQNGelepqpgktlr-------------esfenkvnriLNKARDKAGKSAQKsls----------edNNFKA MVTAGSKGSFINISQIIACVGQQNVEGKripfgfrrrtlp-------------hfikddygpesrGFVENSYLRGLTPQE FFFHAMGGREGLIDTAVKtaeTGYIQRRLVKAMEDVMVKYD >cd10506 {|0(4)|} RNAP_IV_RPD1_N STEIDIEKISVSEIKAPnqvtnprl------------------------------glpnesgqCtTCgakdnkkCEGHFG VIKLPVTIYHPYFISEVAQILNkicpgcksikqkkkkppretlppdywdfipkdgqq----------------------- ---------------eescvtknlpilslaqvkkilkeidpkliakglprQEGLFLKCLPVPPNCHRVTEfthgfs---- ------------------------------------tgsrlIFDERTRaykKLVDFIGTAn----------------eSA ASKKSGLKWMKDLLL-GKRSGHSFRSVVVGDPYLELNEIGIPCEIAERLtvservsswnrerlqeycdltlllkgvi--- ------------------gvrrngrlvgvrshntlqigdvihrplvDGDVVLVNRPPsiHQHSLIALSVKVLPtnSVVSI NPLCCSPFRGDFDGDCLHGYIPQSLQARAELEELVALPKQLISSQSGQNLLSLTQDSLLAAHLMTErgvfldkaqmqqlq mlcps-------qlpppaiiksppsngplwtGKQLFQMLLPtdldysfpsnlvfisd----------------------- --gelisssggsswlrdsEGNLFSILVKhgpGKALDFLDSAQGLLCEWLSMrgfsvsls-dlylssdSYSRQKMIEEISL GLREAEIACNIKqllvdsrkdflsgsgeendvssdverviyerqksAALSQASVSAFKQVfrdiqnlvykyaskdNSLLA MIKAGSKGSLLKLVQQSGCLGLQLSLVKlsyriprqlscaawnsqksprviekdgsectesyipyGVVESSFLDGLNPLE CFVHSITSRDSSFSSNADl--PGTLFRKLMFFMRDIYVAYD