#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:P39140 uniprotkb:P39140 intact:EBI-9538573|ensemblbacteria:CAB15979 intact:EBI-9538573|ensemblbacteria:CAB15979 psi-mi:deor_bacsu(display_long)|uniprotkb:deoR(gene name)|psi-mi:deoR(display_short)|uniprotkb:yxxC(gene name synonym)|uniprotkb:BSU39430(locus name) psi-mi:deor_bacsu(display_long)|uniprotkb:deoR(gene name)|psi-mi:deoR(display_short)|uniprotkb:yxxC(gene name synonym)|uniprotkb:BSU39430(locus name) psi-mi:"MI:0114"(x-ray crystallography) Skerlová et al. (2014) pubmed:24863636|imex:IM-22630 taxid:224308(bacsu)|taxid:224308(Bacillus subtilis) taxid:224308(bacsu)|taxid:224308(Bacillus subtilis) psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0471"(MINT) intact:EBI-9538571|imex:IM-22630-1 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:4OQP|rcsb pdb:4OQQ|refseq:NP_391822.1|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR007324(Putative sugar-binding region)|refseq:WP_003227124.1|interpro:IPR037171|ensemblbacteria:BSU_39430(gene)|ensemblbacteria:CAB15979(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0030246"(carbohydrate binding)|go:"GO:0042802"(identical protein binding) rcsb pdb:4OQP|rcsb pdb:4OQQ|refseq:NP_391822.1|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR007324(Putative sugar-binding region)|refseq:WP_003227124.1|interpro:IPR037171|ensemblbacteria:BSU_39430(gene)|ensemblbacteria:CAB15979(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0030246"(carbohydrate binding)|go:"GO:0042802"(identical protein binding) rcsb pdb:4OQQ|rcsb pdb:4OQP - - figure legend:t1 f1 f2d f3 f8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2014/05/21 2014/10/16 rogid:V//1h2WwJkseEC3DYiuLpmSmZS8224308 rogid:V//1h2WwJkseEC3DYiuLpmSmZS8224308 intact-crc:C1D5E50B6C97439F|rigid:U6y8TrO+fEPghRgs0SUFYXcF2Vw false binding-associated region:56-313 binding-associated region:56-313 2 0 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P39140 uniprotkb:P39140 intact:EBI-9538573|ensemblbacteria:CAB15979 intact:EBI-9538573|ensemblbacteria:CAB15979 psi-mi:deor_bacsu(display_long)|uniprotkb:deoR(gene name)|psi-mi:deoR(display_short)|uniprotkb:yxxC(gene name synonym)|uniprotkb:BSU39430(locus name) psi-mi:deor_bacsu(display_long)|uniprotkb:deoR(gene name)|psi-mi:deoR(display_short)|uniprotkb:yxxC(gene name synonym)|uniprotkb:BSU39430(locus name) psi-mi:"MI:0071"(molecular sieving) Skerlová et al. (2014) pubmed:24863636|imex:IM-22630 taxid:224308(bacsu)|taxid:224308(Bacillus subtilis) taxid:224308(bacsu)|taxid:224308(Bacillus subtilis) psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0471"(MINT) intact:EBI-9538603|imex:IM-22630-2 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:4OQP|rcsb pdb:4OQQ|refseq:NP_391822.1|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR007324(Putative sugar-binding region)|refseq:WP_003227124.1|interpro:IPR037171|ensemblbacteria:BSU_39430(gene)|ensemblbacteria:CAB15979(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0030246"(carbohydrate binding)|go:"GO:0042802"(identical protein binding) rcsb pdb:4OQP|rcsb pdb:4OQQ|refseq:NP_391822.1|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR007324(Putative sugar-binding region)|refseq:WP_003227124.1|interpro:IPR037171|ensemblbacteria:BSU_39430(gene)|ensemblbacteria:CAB15979(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0030246"(carbohydrate binding)|go:"GO:0042802"(identical protein binding) - - - figure legend:f7|comment:"We analysed the oligomeric state of both C-DeoR and full-length DeoR in solution by analytical size-exclusion chromatography. The apparent molecular weight of C-DeR as well as that of the full-length DeoR protein was estimated in the presence or absence of the effector molecule dR5P. These experiments revealed that C-DeoR forms dimers in solution which persist in the presence of dR5P. Full-length DeoR forms tetramers in solution and this oligomeric assembly is also observed in the presence of dR5P (Figure 7)."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2014/05/21 2014/10/16 rogid:V//1h2WwJkseEC3DYiuLpmSmZS8224308 rogid:V//1h2WwJkseEC3DYiuLpmSmZS8224308 intact-crc:AC1E55C5697A4CD3|rigid:U6y8TrO+fEPghRgs0SUFYXcF2Vw false binding-associated region:56-313 binding-associated region:56-313 2 0 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P39140 uniprotkb:P39140 intact:EBI-9538573|ensemblbacteria:CAB15979 intact:EBI-9538573|ensemblbacteria:CAB15979 psi-mi:deor_bacsu(display_long)|uniprotkb:deoR(gene name)|psi-mi:deoR(display_short)|uniprotkb:yxxC(gene name synonym)|uniprotkb:BSU39430(locus name) psi-mi:deor_bacsu(display_long)|uniprotkb:deoR(gene name)|psi-mi:deoR(display_short)|uniprotkb:yxxC(gene name synonym)|uniprotkb:BSU39430(locus name) psi-mi:"MI:0071"(molecular sieving) Skerlová et al. (2014) pubmed:24863636|imex:IM-22630 taxid:224308(bacsu)|taxid:224308(Bacillus subtilis) taxid:224308(bacsu)|taxid:224308(Bacillus subtilis) psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0471"(MINT) intact:EBI-9538610|imex:IM-22630-3 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:4OQP|rcsb pdb:4OQQ|refseq:NP_391822.1|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR007324(Putative sugar-binding region)|refseq:WP_003227124.1|interpro:IPR037171|ensemblbacteria:BSU_39430(gene)|ensemblbacteria:CAB15979(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0030246"(carbohydrate binding)|go:"GO:0042802"(identical protein binding) rcsb pdb:4OQP|rcsb pdb:4OQQ|refseq:NP_391822.1|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR007324(Putative sugar-binding region)|refseq:WP_003227124.1|interpro:IPR037171|ensemblbacteria:BSU_39430(gene)|ensemblbacteria:CAB15979(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0030246"(carbohydrate binding)|go:"GO:0042802"(identical protein binding) - - - figure legend:f7|comment:"We analysed the oligomeric state of both C-DeoR and full-length DeoR in solution by analytical size-exclusion chromatography. The apparent molecular weight of C-DeR as well as that of the full-length DeoR protein was estimated in the presence or absence of the effector molecule dR5P. These experiments revealed that C-DeoR forms dimers in solution which persist in the presence of dR5P. Full-length DeoR forms tetramers in solution and this oligomeric assembly is also observed in the presence of dR5P (Figure 7)."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2014/05/21 2014/10/16 rogid:V//1h2WwJkseEC3DYiuLpmSmZS8224308 rogid:V//1h2WwJkseEC3DYiuLpmSmZS8224308 intact-crc:BAC56F0291655675|rigid:U6y8TrO+fEPghRgs0SUFYXcF2Vw false - - 4 0 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)