#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:O75563	uniprotkb:Q9Y2R2	intact:EBI-2483161|ensembl:ENSP00000005587|uniprotkb:Q53GP6|uniprotkb:Q75MK6|uniprotkb:Q75MZ4|uniprotkb:Q9UBZ3|uniprotkb:Q9UED8|uniprotkb:A4D173	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	psi-mi:skap2_human(display_long)|uniprotkb:SKAP2(gene name)|psi-mi:SKAP2(display_short)|uniprotkb:PRAP(gene name synonym)|uniprotkb:RA70(gene name synonym)|uniprotkb:SAPS(gene name synonym)|uniprotkb:SCAP2(gene name synonym)|uniprotkb:SKAP55R(gene name synonym)|uniprotkb:Src family-associated phosphoprotein 2(gene name synonym)|uniprotkb:Src kinase-associated phosphoprotein 55-related protein(gene name synonym)|uniprotkb:SKAP55 homolog(gene name synonym)|uniprotkb:Src-associated adapter protein with PH and SH3 domains(gene name synonym)|uniprotkb:Pyk2/RAFTK-associated protein(gene name synonym)|uniprotkb:Retinoic acid-induced protein 70(gene name synonym)	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:"MI:0114"(x-ray crystallography)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0407"(direct interaction)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9828809|wwpdb:3OMH|imex:IM-23168-1	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensembl:ENSG00000005020(gene)|ensembl:ENST00000345317(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0008285"(negative regulation of cell population proliferation)|go:"GO:0042113"(B cell activation)|go:"GO:0065003"(protein-containing complex assembly)|interpro:IPR001452(Src homology-3)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR036028|interpro:IPR037781|rcsb pdb:3OMH|reactome:R-HSA-391160|refseq:NP_001290397.1|refseq:NP_003921.2|refseq:XP_016868260.1	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	-	-	-	figure legend:Table 2|3d-resolution:2.90A|3d-r-factors:working 16.4%, free 22.3%|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/12	rogid:/DicuSIa8/M32bXSYfuzrx8gHK89606	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	intact-crc:5FD6A54137E077AB|rigid:hiKHG/gFBbNhXpqXzqa3lntK7W8	false	sufficient binding region:71-79|O4'-phospho-L-tyrosine:75-75	his tag:n-n|sufficient binding region:1-294(IPR000242)	4	4	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:Q9Y2R2	uniprotkb:O75563	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	intact:EBI-2483161|ensembl:ENSP00000005587|uniprotkb:Q53GP6|uniprotkb:Q75MK6|uniprotkb:Q75MZ4|uniprotkb:Q9UBZ3|uniprotkb:Q9UED8|uniprotkb:A4D173	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:skap2_human(display_long)|uniprotkb:SKAP2(gene name)|psi-mi:SKAP2(display_short)|uniprotkb:PRAP(gene name synonym)|uniprotkb:RA70(gene name synonym)|uniprotkb:SAPS(gene name synonym)|uniprotkb:SCAP2(gene name synonym)|uniprotkb:SKAP55R(gene name synonym)|uniprotkb:Src family-associated phosphoprotein 2(gene name synonym)|uniprotkb:Src kinase-associated phosphoprotein 55-related protein(gene name synonym)|uniprotkb:SKAP55 homolog(gene name synonym)|uniprotkb:Src-associated adapter protein with PH and SH3 domains(gene name synonym)|uniprotkb:Pyk2/RAFTK-associated protein(gene name synonym)|uniprotkb:Retinoic acid-induced protein 70(gene name synonym)	psi-mi:"MI:0434"(phosphatase assay)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0203"(dephosphorylation reaction)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9828938|imex:IM-23168-2	-	-	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	ensembl:ENSG00000005020(gene)|ensembl:ENST00000345317(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0008285"(negative regulation of cell population proliferation)|go:"GO:0042113"(B cell activation)|go:"GO:0065003"(protein-containing complex assembly)|interpro:IPR001452(Src homology-3)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR036028|interpro:IPR037781|rcsb pdb:3OMH|reactome:R-HSA-391160|refseq:NP_001290397.1|refseq:NP_003921.2|refseq:XP_016868260.1	go:"GO:0006470"(protein dephosphorylation)|go:"GO:0004721"(phosphoprotein phosphatase activity)	-	-	figure legend:Table 1|causality statement:Q9Y2R2 is required for dephosphorylation of O75563|kinetic_conditions:Temp = 25C, pH = 7|kinetics:kcat/Km = 40 +/- 0.3 x 10E-5 M-1 s-1|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/12	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	rogid:/DicuSIa8/M32bXSYfuzrx8gHK89606	intact-crc:6F944D9B1B279FB5|rigid:hiKHG/gFBbNhXpqXzqa3lntK7W8	false	his tag:n-n|sufficient binding region:1-294(IPR000242)	sufficient binding region:71-79|O4'-phospho-L-tyrosine:75-75	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P06239	uniprotkb:Q9Y2R2	intact:EBI-1348|uniprotkb:P07100|uniprotkb:Q12850|uniprotkb:Q13152|uniprotkb:Q5TDH8|uniprotkb:Q5TDH9|uniprotkb:Q96DW4|uniprotkb:Q9NYT8|ensembl:ENSP00000337825|ensembl:ENSP00000477713|uniprotkb:Q7RTZ3|uniprotkb:D3DPP8	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	psi-mi:lck_human(display_long)|uniprotkb:Protein YT16(gene name synonym)|uniprotkb:Proto-oncogene Lck(gene name synonym)|uniprotkb:T cell-specific protein-tyrosine kinase(gene name synonym)|uniprotkb:LCK(gene name)|psi-mi:LCK(display_short)|uniprotkb:Lymphocyte cell-specific protein-tyrosine kinase(gene name synonym)|uniprotkb:p56-LCK(gene name synonym)|uniprotkb:Leukocyte C-terminal Src kinase(gene name synonym)	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:"MI:0434"(phosphatase assay)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0203"(dephosphorylation reaction)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9830433|imex:IM-23168-5	-	-	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001036236.1|refseq:NP_005347.3|ensembl:ENSG00000182866(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0004714"(transmembrane receptor protein tyrosine kinase activity)|ensembl:ENST00000336890(transcript)|ensembl:ENST00000619559(transcript)|go:"GO:0000242"(pericentriolar material)|go:"GO:0001772"(immunological synapse)|go:"GO:0001784"(phosphotyrosine residue binding)|go:"GO:0043274"(phospholipase binding)|go:"GO:0043548"(phosphatidylinositol 3-kinase binding)|go:"GO:0045087"(innate immune response)|go:"GO:0045121"(membrane raft)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0004715"(non-membrane spanning protein tyrosine kinase activity)|go:"GO:0004722"(protein serine/threonine phosphatase activity)|go:"GO:0005102"(signaling receptor binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006468"(protein phosphorylation)|go:"GO:0006882"(cellular zinc ion homeostasis)|go:"GO:0006919"(activation of cysteine-type endopeptidase activity involved in apoptotic process)|go:"GO:0007169"(transmembrane receptor protein tyrosine kinase signaling pathway)|go:"GO:0008022"(protein C-terminus binding)|go:"GO:0016004"(phospholipase activator activity)|go:"GO:0018108"(peptidyl-tyrosine phosphorylation)|go:"GO:0019901"(protein kinase binding)|go:"GO:0019903"(protein phosphatase binding)|go:"GO:0030097"(hemopoiesis)|go:"GO:0030154"(cell differentiation)|go:"GO:0030168"(platelet activation)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031234"(extrinsic component of cytoplasmic side of plasma membrane)|go:"GO:0031295"(T cell costimulation)|go:"GO:0034116"(positive regulation of heterotypic cell-cell adhesion)|go:"GO:0035556"(intracellular signal transduction)|go:"GO:0042169"(SH2 domain binding)|go:"GO:0042493"|go:"GO:0042608"(T cell receptor binding)|go:"GO:0042609"(CD4 receptor binding)|go:"GO:0042610"(CD8 receptor binding)|go:"GO:0042802"(identical protein binding)|dip:DIP-553N|go:"GO:0050853"(B cell receptor signaling pathway)|go:"GO:0050862"(positive regulation of T cell receptor signaling pathway)|go:"GO:0050870"(positive regulation of T cell activation)|go:"GO:0050900"(leukocyte migration)|go:"GO:0051117"(ATPase binding)|go:"GO:0051209"(release of sequestered calcium ion into cytosol)|go:"GO:0051249"(regulation of lymphocyte activation)|go:"GO:0070062"(extracellular exosome)|go:"GO:1903039"(positive regulation of leukocyte cell-cell adhesion)|go:"GO:2001244"(positive regulation of intrinsic apoptotic signaling pathway)|interpro:IPR000719(Protein kinase, core)|interpro:IPR000980(SH2 motif)|interpro:IPR001245(Tyrosine protein kinase)|interpro:IPR001452(Src homology-3)|interpro:IPR008266(Tyrosine protein kinase, active site)|interpro:IPR011009(Protein kinase-like)|interpro:IPR017441(Protein kinase ATP binding, conserved site)|interpro:IPR020635|interpro:IPR035749|interpro:IPR035850|interpro:IPR036028|interpro:IPR036860|mint:P06239|rcsb pdb:1BHF|rcsb pdb:1BHH|rcsb pdb:1CWD|rcsb pdb:1CWE|rcsb pdb:1FBZ|rcsb pdb:1H92|rcsb pdb:1IJR|rcsb pdb:1KIK|rcsb pdb:1LCJ|rcsb pdb:1LCK|rcsb pdb:1LKK|rcsb pdb:1LKL|rcsb pdb:1Q68|rcsb pdb:1Q69|rcsb pdb:1QPC|rcsb pdb:1QPD|rcsb pdb:1QPE|rcsb pdb:1QPJ|rcsb pdb:1X27|rcsb pdb:2IIM|rcsb pdb:2OF2|rcsb pdb:2OF4|rcsb pdb:2OFU|rcsb pdb:2OFV|rcsb pdb:2OG8|rcsb pdb:2PL0|rcsb pdb:2ZM1|rcsb pdb:2ZM4|rcsb pdb:2ZYB|rcsb pdb:3AC1|rcsb pdb:3AC2|rcsb pdb:3AC3|rcsb pdb:3AC4|rcsb pdb:3AC5|rcsb pdb:3AC8|rcsb pdb:3ACJ|rcsb pdb:3ACK|rcsb pdb:3AD4|rcsb pdb:3AD5|rcsb pdb:3AD6|rcsb pdb:3B2W|rcsb pdb:3BRH|rcsb pdb:3BYM|rcsb pdb:3BYO|rcsb pdb:3BYS|rcsb pdb:3BYU|rcsb pdb:3KMM|rcsb pdb:3KXZ|rcsb pdb:3LCK|rcsb pdb:3MPM|rcsb pdb:4C3F|rcsb pdb:4D8K|rcsb pdb:5MTM|rcsb pdb:5MTN|rcsb pdb:6H6A|rcsb pdb:6PDJ|reactome:R-HSA-114604|reactome:R-HSA-1257604|reactome:R-HSA-1433557|reactome:R-HSA-1433559|reactome:R-HSA-164944|reactome:R-HSA-167590|reactome:R-HSA-202424|reactome:R-HSA-202427|reactome:R-HSA-202430|reactome:R-HSA-202433|reactome:R-HSA-210990|reactome:R-HSA-2219530|reactome:R-HSA-2424491|reactome:R-HSA-389356|reactome:R-HSA-389357|reactome:R-HSA-389359|reactome:R-HSA-389513|reactome:R-HSA-389948|reactome:R-HSA-6811558|reactome:R-HSA-9013407|reactome:R-HSA-9020558|reactome:R-HSA-9670439|reactome:R-HSA-9706374	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0006470"(protein dephosphorylation)	-	-	figure legend:Table 1|causality statement:Q9Y2R2 is required for dephosphorylation of P06239|kinetic_conditions:Temp = 25C, pH = 7|kinetics:kcat/Km = 6.2 +/- 0.1 x 10E-5 M-1 s-1|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/12	rogid:AIdRYIcSNXmD2ovQiEn9N4CWr/M9606	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	intact-crc:E87809F91657543C|rigid:T2oMO6n5xjJ/emG4zwgegiakPVU	false	sufficient binding region:390-398|O4'-phospho-L-tyrosine:394-394	his tag:n-n|sufficient binding region:1-294(IPR000242)	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
intact:EBI-9974951	uniprotkb:Q9Y2R2	-	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	psi-mi:ptn22_substrate_peptide-1(display_short)|psi-mi:EBI-9974951(display_long)	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:"MI:0434"(phosphatase assay)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:-2(chemical synthesis)|taxid:-2("Chemical synthesis (Chemical synthesis)")	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0203"(dephosphorylation reaction)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9974957|imex:IM-23168-7	-	-	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0327"(peptide)	psi-mi:"MI:0326"(protein)	pubmed:21719704(primary-reference)	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0006470"(protein dephosphorylation)	-	-	figure legend:Table 1|kinetics:kcat/Km = 46 +/- 0.5 x 10E-5 M-1 s-1|kinetic_conditions:Temp = 25C, pH = 7|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/13	rogid:xAjn/XLFFFrj7aiF05sKjSlRQqk-2	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	intact-crc:6F63BE196E4AB553|rigid:pXb6PLibB4uWvHwiJUmyGG0g9Y8	false	O4'-phospho-L-tyrosine:5-5|sufficient binding region:1-9	his tag:n-n|sufficient binding region:1-294(IPR000242)	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:Q9Y2R2	intact:EBI-9974954	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	-	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:ptn22_substrate_peptide-2(display_short)|psi-mi:EBI-9974954(display_long)	psi-mi:"MI:0434"(phosphatase assay)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:-2(chemical synthesis)|taxid:-2("Chemical synthesis (Chemical synthesis)")	psi-mi:"MI:0203"(dephosphorylation reaction)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9974964|imex:IM-23168-8	-	-	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0327"(peptide)	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	pubmed:21719704(primary-reference)	go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0006470"(protein dephosphorylation)	-	-	figure legend:Table 1|kinetics:kcat/Km = 21 +/- 0.1 x 10E-5 M-1 s-1|kinetic_conditions:Temp = 25C, pH = 7|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/13	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	rogid:o4ie5u8SF6oSZOULXYxsqZ97tns-2	intact-crc:D34509A5F98FDD24|rigid:ksxHfbdUEN/aegYDQFgMdbta5ZE	false	his tag:n-n|sufficient binding region:1-294(IPR000242)	sufficient binding region:1-9|O4'-phospho-L-tyrosine:5-5	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:Q9Y2R2	uniprotkb:O75563	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	intact:EBI-2483161|ensembl:ENSP00000005587|uniprotkb:Q53GP6|uniprotkb:Q75MK6|uniprotkb:Q75MZ4|uniprotkb:Q9UBZ3|uniprotkb:Q9UED8|uniprotkb:A4D173	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:skap2_human(display_long)|uniprotkb:SKAP2(gene name)|psi-mi:SKAP2(display_short)|uniprotkb:PRAP(gene name synonym)|uniprotkb:RA70(gene name synonym)|uniprotkb:SAPS(gene name synonym)|uniprotkb:SCAP2(gene name synonym)|uniprotkb:SKAP55R(gene name synonym)|uniprotkb:Src family-associated phosphoprotein 2(gene name synonym)|uniprotkb:Src kinase-associated phosphoprotein 55-related protein(gene name synonym)|uniprotkb:SKAP55 homolog(gene name synonym)|uniprotkb:Src-associated adapter protein with PH and SH3 domains(gene name synonym)|uniprotkb:Pyk2/RAFTK-associated protein(gene name synonym)|uniprotkb:Retinoic acid-induced protein 70(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9828959|imex:IM-23168-3	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	ensembl:ENSG00000005020(gene)|ensembl:ENST00000345317(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0008285"(negative regulation of cell population proliferation)|go:"GO:0042113"(B cell activation)|go:"GO:0065003"(protein-containing complex assembly)|interpro:IPR001452(Src homology-3)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR036028|interpro:IPR037781|rcsb pdb:3OMH|reactome:R-HSA-391160|refseq:NP_001290397.1|refseq:NP_003921.2|refseq:XP_016868260.1	-	-	-	figure legend:Fig. 2b|comment:The wild type Lyp does not interact with  SKAP-HOM.|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2014/10/06	2014/11/12	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	rogid:/DicuSIa8/M32bXSYfuzrx8gHK89606	intact-crc:E4B51FCB11812942|rigid:hiKHG/gFBbNhXpqXzqa3lntK7W8	false	myc tag:?-?|mutation:195-195	flag tag:?-?	-	-	psi-mi:"MI:0705"(anti tag western blot)	psi-mi:"MI:0705"(anti tag western blot)
uniprotkb:Q3UND0	uniprotkb:Q9Y2R2	intact:EBI-642769|uniprotkb:Q8BK74|uniprotkb:Q9Z2K4|ensembl:ENSMUSP00000145462	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	psi-mi:skap2_mouse(display_long)|uniprotkb:Src family-associated phosphoprotein 2(gene name synonym)|uniprotkb:Src kinase-associated phosphoprotein 55-related protein(gene name synonym)|uniprotkb:SKAP55 homolog(gene name synonym)|uniprotkb:Src-associated adapter protein with PH and SH3 domains(gene name synonym)|uniprotkb:Pyk2/RAFTK-associated protein(gene name synonym)|uniprotkb:Skap2(gene name)|psi-mi:Skap2(display_short)|uniprotkb:Prap(gene name synonym)|uniprotkb:Saps(gene name synonym)|uniprotkb:Ra70(gene name synonym)|uniprotkb:Scap2(gene name synonym)|uniprotkb:Skap55r(gene name synonym)	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:"MI:0096"(pull down)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:10090(mouse)|taxid:10090(Mus musculus)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9828978|imex:IM-23168-4	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_061243.1|ensembl:ENSMUSG00000059182(gene)|ensembl:ENSMUST00000204778(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008285"(negative regulation of cell population proliferation)|go:"GO:0042113"(B cell activation)|interpro:IPR001452(Src homology-3)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR036028|interpro:IPR037781|rcsb pdb:1M0V|rcsb pdb:1U5E|rcsb pdb:1U5F|rcsb pdb:1U5G|rcsb pdb:2OTX|reactome:R-MMU-391160	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	-	-	-	figure legend:Fig. 2a|comment:The wild type Lyp does not interact with SKAP-HOM.|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/12	rogid:2WPz/JocPjHR9w8dHv5ha396QWQ10090	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	intact-crc:6B981167D6C9CE4A|rigid:YiOJ/qMKvvdipUD3tY37Rcjy0g0	false	O4'-phospho-L-tyrosine:?-?	glutathione s tranferase tag:n-n|mutation:195-195	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:Q9Y2R2	uniprotkb:Q3UND0	intact:EBI-1211241|uniprotkb:A0N0K6|intact:EBI-28975949|uniprotkb:O95063|uniprotkb:O95064|uniprotkb:D4NZ71|uniprotkb:Q6IPX8|uniprotkb:Q8WVM1|uniprotkb:B1ALC8|uniprotkb:E9PLD8|uniprotkb:E9PPI1	intact:EBI-642769|uniprotkb:Q8BK74|uniprotkb:Q9Z2K4|ensembl:ENSMUSP00000145462	psi-mi:ptn22_human(display_long)|uniprotkb:PTPN22(gene name)|psi-mi:PTPN22(display_short)|uniprotkb:PTPN8(gene name synonym)|uniprotkb:Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP(gene name synonym)|uniprotkb:Lymphoid phosphatase(gene name synonym)|uniprotkb:PEST-domain phosphatase(gene name synonym)	psi-mi:skap2_mouse(display_long)|uniprotkb:Src family-associated phosphoprotein 2(gene name synonym)|uniprotkb:Src kinase-associated phosphoprotein 55-related protein(gene name synonym)|uniprotkb:SKAP55 homolog(gene name synonym)|uniprotkb:Src-associated adapter protein with PH and SH3 domains(gene name synonym)|uniprotkb:Pyk2/RAFTK-associated protein(gene name synonym)|uniprotkb:Skap2(gene name)|psi-mi:Skap2(display_short)|uniprotkb:Prap(gene name synonym)|uniprotkb:Saps(gene name synonym)|uniprotkb:Ra70(gene name synonym)|uniprotkb:Scap2(gene name synonym)|uniprotkb:Skap55r(gene name synonym)	psi-mi:"MI:0096"(pull down)	Yu et al. (2011)	imex:IM-23168|pubmed:21719704	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:10090(mouse)|taxid:10090(Mus musculus)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9974931|imex:IM-23168-6	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001180360.1|refseq:NP_036543.4|refseq:NP_057051.3|ensembl:ENST00000460620|ensembl:ENSP00000433141|ensembl:ENSG00000134242|refseq:NP_001295226.1|mint:Q9Y2R2|dip:DIP-29953N|go:"GO:0002230"(positive regulation of defense response to virus by host)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0004726"(non-membrane spanning protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006914"(autophagy)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0016791"(phosphatase activity)|go:"GO:0017124"(SH3 domain binding)|go:"GO:0019900"(kinase binding)|go:"GO:0030217"(T cell differentiation)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031663"(lipopolysaccharide-mediated signaling pathway)|go:"GO:0032481"(positive regulation of type I interferon production)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0032715"(negative regulation of interleukin-6 production)|go:"GO:0032717"(negative regulation of interleukin-8 production)|go:"GO:0032720"(negative regulation of tumor necrosis factor production)|go:"GO:0032729"(positive regulation of interferon-gamma production)|go:"GO:0032817"(regulation of natural killer cell proliferation)|go:"GO:0034141"(positive regulation of toll-like receptor 3 signaling pathway)|go:"GO:0034145"(positive regulation of toll-like receptor 4 signaling pathway)|go:"GO:0034157"(positive regulation of toll-like receptor 7 signaling pathway)|go:"GO:0034165"(positive regulation of toll-like receptor 9 signaling pathway)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0035644"(phosphoanandamide dephosphorylation)|go:"GO:0043508"(negative regulation of JUN kinase activity)|go:"GO:0045088"(regulation of innate immune response)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0050852"(T cell receptor signaling pathway)|go:"GO:0050855"(regulation of B cell receptor signaling pathway)|go:"GO:0050860"(negative regulation of T cell receptor signaling pathway)|go:"GO:0050868"(negative regulation of T cell activation)|go:"GO:0070374"(positive regulation of ERK1 and ERK2 cascade)|go:"GO:0070433"(negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway)|go:"GO:0071225"(cellular response to muramyl dipeptide)|go:"GO:0071663"(positive regulation of granzyme B production)|go:"GO:1901222"(regulation of NIK/NF-kappaB signaling)|go:"GO:1902523"(positive regulation of protein K63-linked ubiquitination)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:2000566"(positive regulation of CD8-positive, alpha-beta T cell proliferation)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR016130(Protein-tyrosine phosphatase, active site)|interpro:IPR016276(Non-receptor tyrosine-protein phosphatase, 8/22)|interpro:IPR029021|rcsb pdb:2P6X|rcsb pdb:2QCJ|rcsb pdb:2QCT|rcsb pdb:3BRH|rcsb pdb:3H2X|rcsb pdb:3OLR|reactome:R-HSA-202430|rcsb pdb:3OMH|rcsb pdb:4J51|reactome:R-HSA-202427	refseq:NP_061243.1|ensembl:ENSMUSG00000059182(gene)|ensembl:ENSMUST00000204778(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008285"(negative regulation of cell population proliferation)|go:"GO:0042113"(B cell activation)|interpro:IPR001452(Src homology-3)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR036028|interpro:IPR037781|rcsb pdb:1M0V|rcsb pdb:1U5E|rcsb pdb:1U5F|rcsb pdb:1U5G|rcsb pdb:2OTX|reactome:R-MMU-391160	-	-	-	figure legend:Fig. 2a|comment:The wild type Lyp does not interact with SKAP-HOM.|dataset:IBD - Inflammatory bowel disease|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/10/06	2014/11/12	rogid:KyIn+zCiuuIacrwk5MUzPEUQqKQ9606	rogid:2WPz/JocPjHR9w8dHv5ha396QWQ10090	intact-crc:7F7EF830A3DE83B7|rigid:YiOJ/qMKvvdipUD3tY37Rcjy0g0	false	mutation:227-227|glutathione s tranferase tag:n-n	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)