#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:Q05468	uniprotkb:P02406	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15318|uniprotkb:D6VU43|ensemblfungi:YGL103W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rl28_yeast(display_long)|uniprotkb:YGL103W(locus name)|uniprotkb:RPL28(gene name)|psi-mi:RPL28(display_short)|uniprotkb:CYH2(gene name synonym)|uniprotkb:L29(gene name synonym)|uniprotkb:YL24(gene name synonym)|uniprotkb:RP44(gene name synonym)|uniprotkb:L27a(gene name synonym)|uniprotkb:RP62(gene name synonym)|uniprotkb:Large ribosomal subunit protein uL15(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_011412.1|sgd:S000003071|interpro:IPR001196(Ribosomal protein L15)|interpro:IPR021131|rcsb pdb:1K5Y|reactome:R-SCE-156827|rcsb pdb:7AZY|rcsb pdb:7B7D|rcsb pdb:7NRC|rcsb pdb:7NRD|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|interpro:IPR030878|rcsb pdb:4V6I|rcsb pdb:4V7F|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:4V91|rcsb pdb:6N8K|rcsb pdb:6N8L|rcsb pdb:6N8J|rcsb pdb:6N8M|rcsb pdb:6N8N|rcsb pdb:6N8O|rcsb pdb:6Q8Y|rcsb pdb:4V8T|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5FL8|rcsb pdb:6YLX|rcsb pdb:6YLY|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:6M62|rcsb pdb:6XIQ|rcsb pdb:6XIR|rcsb pdb:6YLG|rcsb pdb:6YLH|reactome:R-SCE-1799339|rcsb pdb:6HHQ|rcsb pdb:5GAK|rcsb pdb:6HD7|ensemblfungi:YGL103W(gene)|ensemblfungi:YGL103W_mRNA(transcript)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0022625"(cytosolic large ribosomal subunit)|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4V4B|rcsb pdb:3JCT|rcsb pdb:5DC3|rcsb pdb:5I4L|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5DAT|rcsb pdb:5T62|rcsb pdb:5T6R|rcsb pdb:5DGF|rcsb pdb:5DGV|rcsb pdb:5LYB|rcsb pdb:5TGA|rcsb pdb:5ON6|rcsb pdb:5JCS|rcsb pdb:5DGE|rcsb pdb:5H4P|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5TGM|interpro:IPR036227|rcsb pdb:5MEI|rcsb pdb:5TBW|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|rcsb pdb:5OBM|rcsb pdb:6ELZ|rcsb pdb:6FT6|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6QIK|rcsb pdb:6QT0|rcsb pdb:6QTZ|rcsb pdb:6R84|rcsb pdb:6R87|rcsb pdb:6RI5|rcsb pdb:6RZZ|rcsb pdb:6S05|rcsb pdb:6I7O|rcsb pdb:6R86|rcsb pdb:6S47|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6OIG|rcsb pdb:6WOO|rcsb pdb:7BT6|rcsb pdb:7BTB	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:wyZPWCEROOzQBdmTH3fUWkIWi+w559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P05318	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15452|uniprotkb:D6VRR8|ensemblfungi:YDL081C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rla1_yeast(display_long)|uniprotkb:RPA1(gene name synonym)|uniprotkb:RPLA1(gene name synonym)|uniprotkb:RPP1A(gene name)|psi-mi:RPP1A(display_short)|uniprotkb:L12EIIA(gene name synonym)|uniprotkb:L12eIIA(gene name synonym)|uniprotkb:YP1alpha(gene name synonym)|uniprotkb:YDL081C(locus name)|uniprotkb:Large ribosomal subunit protein P1-A(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_010202.1|sgd:S000002239|ensemblfungi:YDL081C(gene)|ensemblfungi:YDL081C_mRNA(transcript)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006414"(translational elongation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0030295"(protein kinase activator activity)|go:"GO:0043021"(ribonucleoprotein complex binding)|go:"GO:0045860"(positive regulation of protein kinase activity)|interpro:IPR027534|interpro:IPR038716|rcsb pdb:4V6I|rcsb pdb:5DGE|reactome:R-SCE-156827|reactome:R-SCE-1799339|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|dip:DIP-1583N|mint:P05318	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:hbQ2Dcvb6Kk7kbFYfXpzvLk6Rp8559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P04456	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15308|uniprotkb:D6W1U1|ensemblfungi:YOL127W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rl25_yeast(display_long)|uniprotkb:YOL127W(locus name)|uniprotkb:RPL25(gene name)|psi-mi:RPL25(display_short)|uniprotkb:YL25(gene name synonym)|uniprotkb:RP16L(gene name synonym)|uniprotkb:YP42'(gene name synonym)|uniprotkb:Large ribosomal subunit protein uL23(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_014514.1|sgd:S000005487|reactome:R-SCE-156827|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|reactome:R-SCE-1799339|ensemblfungi:YOL127W(gene)|ensemblfungi:YOL127W_mRNA(transcript)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0030687"(preribosome, large subunit precursor)|interpro:IPR001014(Ribosomal protein L23, conserved site)|interpro:IPR005633(Ribosomal protein L23/L25, N-terminal)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR012678(Ribosomal protein L23/L15e, core)|interpro:IPR013025(Ribosomal protein L25/L23)|rcsb pdb:1K5Y|rcsb pdb:2WW9|rcsb pdb:2WWA|rcsb pdb:2WWB|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5LYB|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5T62|rcsb pdb:5T6R|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:5TGM|rcsb pdb:6CB1|rcsb pdb:6ELZ|rcsb pdb:6EM5|rcsb pdb:6FT6|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HD7|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6M62|rcsb pdb:6N8J|rcsb pdb:6N8K|rcsb pdb:6N8L|rcsb pdb:6N8M|rcsb pdb:6N8N|rcsb pdb:6N8O|rcsb pdb:6OIG|rcsb pdb:6Q8Y|rcsb pdb:6QIK|rcsb pdb:6QT0|rcsb pdb:6QTZ|rcsb pdb:6R84|rcsb pdb:6R86|rcsb pdb:6R87|rcsb pdb:6RI5|rcsb pdb:6RZZ|rcsb pdb:6S05|rcsb pdb:6S47|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6WOO|rcsb pdb:6XIQ|rcsb pdb:6XIR|rcsb pdb:6YLG|rcsb pdb:6YLH|rcsb pdb:6YLX|rcsb pdb:6YLY|rcsb pdb:3J78|rcsb pdb:3JCT|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V4B|rcsb pdb:4V6I|rcsb pdb:4V7F|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8T|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:4V91|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGF|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5FL8|rcsb pdb:5GAK|rcsb pdb:5H4P|rcsb pdb:5I4L|rcsb pdb:5JCS|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:7AZY|rcsb pdb:7B7D|rcsb pdb:7BT6|rcsb pdb:7BTB|rcsb pdb:7NRC|rcsb pdb:7NRD|dip:DIP-7137N	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:EjLr1wGyykXvvHofNGPonJi/OtM559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:Q12532	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	-	-	crc64:C0ADE76922F26BE0	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P38011	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-7405|uniprotkb:Q6LAA5|uniprotkb:D6VZT9|ensemblfungi:YMR116C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:gblp_yeast(display_long)|uniprotkb:ASC1(gene name)|psi-mi:ASC1(display_short)|uniprotkb:CPC2(gene name synonym)|uniprotkb:Receptor of activated protein kinase C 1(gene name synonym)|uniprotkb:Receptor for activated C kinase(gene name synonym)|uniprotkb:Small ribosomal subunit protein RACK1(gene name synonym)|uniprotkb:YM9718.15C(orf name)|uniprotkb:YMR116C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_013834.1|sgd:S000004722|mint:P38011|dip:DIP-6465N|ensemblfungi:YMR116C(gene)|ensemblfungi:YMR116C_mRNA(transcript)|go:"GO:0001403"(invasive growth in response to glucose limitation)|go:"GO:0001934"(positive regulation of protein phosphorylation)|go:"GO:0001965"(G-protein alpha-subunit binding)|go:"GO:0005080"(protein kinase C binding)|go:"GO:0005092"(GDP-dissociation inhibitor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0007186"(G protein-coupled receptor signaling pathway)|go:"GO:0008104"(protein localization)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0043022"(ribosome binding)|go:"GO:0061157"(mRNA destabilization)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:0080135"(regulation of cellular response to stress)|go:"GO:1902660"(negative regulation of glucose mediated signaling pathway)|go:"GO:2001125"(negative regulation of translational frameshifting)|interpro:IPR001680(WD40 repeat)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322|rcsb pdb:1TRJ|rcsb pdb:3FRX|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:3RFG|rcsb pdb:3RFH|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V6I|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:4V92|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGF|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5I4L|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5LYB|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:5TGM|rcsb pdb:6FAI|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6Q8Y|rcsb pdb:6RBE|rcsb pdb:6S47|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6WDR|rcsb pdb:6WOO|rcsb pdb:6XIQ|rcsb pdb:6XIR|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:6ZCE|rcsb pdb:6ZU9|rcsb pdb:6ZVI|rcsb pdb:7A1G|rcsb pdb:7NRC|rcsb pdb:7NRD|rcsb pdb:7B7D	-	-	crc64:B9A5D4959A3C54FB	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:T9ugPN58tGKmSOjRbv1bD1rznH8559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P53044	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-19997|uniprotkb:D6VUI5|uniprotkb:Q45U36|ensemblfungi:YGR048W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:ufd1_yeast(display_long)|uniprotkb:UFD1(gene name)|psi-mi:UFD1(display_short)|uniprotkb:PIP3(gene name synonym)|uniprotkb:Polymerase-interacting protein 3(gene name synonym)|uniprotkb:YGR048W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_011562.1|sgd:S000003280|go:"GO:0006274"(DNA replication termination)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072665"(protein localization to vacuole)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR004854(Ubiquitin fusion degradation protein UFD1)|interpro:IPR042299|rcsb pdb:1ZC1|rcsb pdb:6JWJ|reactome:R-SCE-110320|ensemblfungi:YGR048W(gene)|ensemblfungi:YGR048W_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|dip:DIP-1476N|mint:P53044	-	-	crc64:198E0CD48B863B98	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:u/YG6aRuJ38NLsxGkUsfM9nXAnU559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P02400	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15464|uniprotkb:D6VT16|ensemblfungi:YDR382W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rla4_yeast(display_long)|uniprotkb:RPP2B(gene name)|psi-mi:RPP2B(display_short)|uniprotkb:L12EIA(gene name synonym)|uniprotkb:RPL45(gene name synonym)|uniprotkb:RPLA4(gene name synonym)|uniprotkb:L12eIA(gene name synonym)|uniprotkb:YP2beta(gene name synonym)|uniprotkb:L45(gene name synonym)|uniprotkb:YL44C(gene name synonym)|uniprotkb:YPA1(gene name synonym)|uniprotkb:YDR382W(locus name)|uniprotkb:Large ribosomal subunit protein P2-B(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	sgd:S000002790|reactome:R-SCE-156827|reactome:R-SCE-1799339|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|refseq:NP_010670.3|ensemblfungi:YDR382W(gene)|ensemblfungi:YDR382W_mRNA(transcript)|go:"GO:0000324"(fungal-type vacuole)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0002182"(cytoplasmic translational elongation)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0030295"(protein kinase activator activity)|go:"GO:0045860"(positive regulation of protein kinase activity)|interpro:IPR027534|interpro:IPR038716|interpro:IPR044076|rcsb pdb:3N2D|rcsb pdb:3N3X|dip:DIP-580N	-	-	crc64:EC45406CB5F199F4	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:dvY8zJb/i5nIRnNekgTQdY9Novs559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P38061	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15346|uniprotkb:A2TBM1|uniprotkb:D6VPR1|ensemblfungi:YBL092W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rl32_yeast(display_long)|uniprotkb:RPL32(gene name)|psi-mi:RPL32(display_short)|uniprotkb:Large ribosomal subunit protein eL32(gene name synonym)|uniprotkb:YBL0838(orf name)|uniprotkb:YBL092W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_009460.1|sgd:S000000188|reactome:R-SCE-156827|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|reactome:R-SCE-1799339|ensemblfungi:YBL092W(gene)|ensemblfungi:YBL092W_mRNA(transcript)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR001515(Ribosomal protein L32e)|interpro:IPR018263|interpro:IPR036351|rcsb pdb:1K5Y|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:3JCT|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V4B|rcsb pdb:4V6I|rcsb pdb:4V7F|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8T|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:6ELZ|rcsb pdb:6EM1|rcsb pdb:6EM3|rcsb pdb:6EM4|rcsb pdb:6EM5|rcsb pdb:6FT6|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HD7|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6M62|rcsb pdb:6N8J|rcsb pdb:6N8K|rcsb pdb:6N8L|rcsb pdb:6N8M|rcsb pdb:6N8N|rcsb pdb:6N8O|rcsb pdb:6OIG|rcsb pdb:6Q8Y|rcsb pdb:6QIK|rcsb pdb:6QT0|rcsb pdb:4V91|rcsb pdb:5JUO|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5DAT|rcsb pdb:5JUP|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGF|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5LYB|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5T62|rcsb pdb:5T6R|rcsb pdb:5TBW|rcsb pdb:5FCJ|rcsb pdb:5TGA|rcsb pdb:5TGM|rcsb pdb:5Z3G|rcsb pdb:6C0F|rcsb pdb:6CB1|rcsb pdb:5FL8|rcsb pdb:5GAK|rcsb pdb:5H4P|rcsb pdb:5I4L|rcsb pdb:5JCS|rcsb pdb:6R84|rcsb pdb:6R86|rcsb pdb:6R87|rcsb pdb:6RI5|rcsb pdb:6RZZ|rcsb pdb:6S05|rcsb pdb:6S47|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6WOO|rcsb pdb:6YLG|rcsb pdb:6YLH|rcsb pdb:6YLX|rcsb pdb:6YLY|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:7AZY|rcsb pdb:7B7D|rcsb pdb:7BT6|rcsb pdb:7BTB|rcsb pdb:7NRC|rcsb pdb:7NRD|rcsb pdb:6QTZ|dip:DIP-5176N	-	-	crc64:5C5EDD87D6841976	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:lgHd/h3NhXrxLbdU/stdDx5igDw559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P25694	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-4308|ensemblfungi:YDL126C|uniprotkb:D6VRM4	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:cdc48_yeast(display_long)|uniprotkb:CDC48(gene name)|psi-mi:CDC48(display_short)|uniprotkb:Cell division cycle protein 48(gene name synonym)|uniprotkb:Transitional endoplasmic reticulum ATPase homolog(gene name synonym)|uniprotkb:YDL126C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_010157.1|sgd:S000002284|ensemblfungi:YDL126C(gene)|ensemblfungi:YDL126C_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|dip:DIP-2704N|mint:P25694|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005739"(mitochondrion)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0006274"(DNA replication termination)|go:"GO:0010636"(positive regulation of mitochondrial fusion)|go:"GO:0016236"(macroautophagy)|go:"GO:0016320"(endoplasmic reticulum membrane fusion)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0034517"(ribophagy)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043328"(protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)|go:"GO:0043332"(mating projection tip)|go:"GO:0043624"|go:"GO:0046034"(ATP metabolic process)|go:"GO:0051228"(mitotic spindle disassembly)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071630"(nuclear protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:0097352"(autophagosome maturation)|go:"GO:0120174"(stress-induced homeostatically regulated protein degradation pathway)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|go:"GO:1990171"(SCF complex disassembly in response to cadmium stress)|go:"GO:2001168"(positive regulation of histone H2B ubiquitination)|interpro:IPR003338(AAA ATPase VAT, N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR004201(Cell division protein 48, CDC48, domain 2)|interpro:IPR005938(AAA ATPase, CDC48)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR015415(Vps4 oligomerisation, C-terminal)|interpro:IPR027417|interpro:IPR029067|interpro:IPR041569|rcsb pdb:6OA9|rcsb pdb:6OAA|rcsb pdb:6OAB|rcsb pdb:6OMB|rcsb pdb:6OPC|reactome:R-SCE-110320|reactome:R-SCE-3371511|reactome:R-SCE-532668|reactome:R-SCE-5358346|reactome:R-SCE-5689896|reactome:R-SCE-6798695|reactome:R-SCE-8876725	-	-	crc64:02ADDB9A227614D8	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:qM/04kWcyjkQ3QCa3WklyvhNigE559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P33755	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-12193|uniprotkb:D6VQG6|ensemblfungi:YBR170C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:npl4_yeast(display_long)|uniprotkb:NPL4(gene name)|psi-mi:NPL4(display_short)|uniprotkb:YBR170C(locus name)|uniprotkb:YBR1231(orf name)|uniprotkb:HRD4(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 4(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	ensemblfungi:YBR170C(gene)|ensemblfungi:YBR170C_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006274"(DNA replication termination)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031965"(nuclear membrane)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0042175"(nuclear outer membrane-endoplasmic reticulum membrane network)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0051028"(mRNA transport)|go:"GO:0051228"(mitotic spindle disassembly)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072665"(protein localization to vacuole)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR007716(NPL4, zinc-binding putative)|go:"GO:0043130"(ubiquitin binding)|interpro:IPR016563(Polyubiquitin-tagged protein recognition complex, Npl4 component)|interpro:IPR029071|interpro:IPR037518|rcsb pdb:6JWH|rcsb pdb:6JWI|rcsb pdb:6JWJ|interpro:IPR007717(NPL4)|rcsb pdb:6OA9|rcsb pdb:6OAA|reactome:R-SCE-110320|refseq:NP_009729.1|sgd:S000000374|dip:DIP-1475N|mint:P33755	-	-	crc64:6EF35D21338EE07E	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:2+0sYJtYCsEX5lm8Tk91hNDj8II559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:Q04781	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-3773151|uniprotkb:Q04029|uniprotkb:D6W074|ensemblfungi:YMR247C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:ltn1_yeast(display_long)|uniprotkb:RING-type E3 ubiquitin transferase listerin(gene name synonym)|uniprotkb:YM9408.09C(orf name)|uniprotkb:YM9920.01C(orf name)|uniprotkb:YMR247C(locus name)|uniprotkb:RKR1(gene name)|psi-mi:RKR1(display_short)|uniprotkb:LTN1(gene name synonym)|uniprotkb:RING domain mutant killed by rtf1 deletion protein 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	reactome:R-SCE-983168|interpro:IPR039795|interpro:IPR039804|interpro:IPR011016(Zinc finger, variant RING-type)|refseq:NP_013975.1|sgd:S000004861|interpro:IPR016024(Armadillo-type fold)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|ensemblfungi:YMR247C(gene)|ensemblfungi:YMR247C_mRNA(transcript)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0006348"|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0010498"(proteasomal protein catabolic process)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0030163"(protein catabolic process)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|rcsb pdb:5FG0|rcsb pdb:5FG1	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:DKwbRS7LCtIBQA/PtCdCTvAg3DQ559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P05317	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15447|uniprotkb:D6VYX8|ensemblfungi:YLR340W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rla0_yeast(display_long)|uniprotkb:RPP0(gene name)|psi-mi:RPP0(display_short)|uniprotkb:L10E(gene name synonym)|uniprotkb:RPA0(gene name synonym)|uniprotkb:RPL10E(gene name synonym)|uniprotkb:RPLA0(gene name synonym)|uniprotkb:YLR340W(locus name)|uniprotkb:L8300.8(orf name)|uniprotkb:L10e(gene name synonym)|uniprotkb:Large ribosomal subunit protein uL10(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_013444.1|sgd:S000004332|rcsb pdb:4U4Q|rcsb pdb:4U4O|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V6I|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8T|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5I4L|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5LYB|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6OIG|rcsb pdb:6R84|rcsb pdb:6R86|rcsb pdb:6R87|rcsb pdb:6SV4|rcsb pdb:6T83|rcsb pdb:6WOO|reactome:R-SCE-156827|reactome:R-SCE-1799339|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|ensemblfungi:YLR340W(gene)|ensemblfungi:YLR340W_mRNA(transcript)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0030686"(90S preribosome)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001790(Ribosomal protein L10)|interpro:IPR030670|interpro:IPR040637|interpro:IPR043141|interpro:IPR043164|rcsb pdb:3J16|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|dip:DIP-1582N|mint:P05317	-	-	crc64:109ECC90F7C8B68E	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:tDFq7ONYYye6eh1DSwk1MccaBfo559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P38879	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-6379|uniprotkb:D3DLE1|ensemblfungi:YHR193C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:naca_yeast(display_long)|uniprotkb:EGD2(gene name)|psi-mi:EGD2(display_short)|uniprotkb:Alpha-NAC(gene name synonym)|uniprotkb:GAL4 DNA-binding enhancer protein 2(gene name synonym)|uniprotkb:YHR193C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	sgd:S000001236|refseq:NP_012063.3|mint:P38879|dip:DIP-2098N|ensemblfungi:YHR193C(gene)|ensemblfungi:YHR193C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005854"(nascent polypeptide-associated complex)|go:"GO:0006612"(protein targeting to membrane)|go:"GO:0006620"(posttranslational protein targeting to endoplasmic reticulum membrane)|go:"GO:0032266"(phosphatidylinositol-3-phosphate binding)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0070273"(phosphatidylinositol-4-phosphate binding)|go:"GO:0070300"(phosphatidic acid binding)|go:"GO:0080025"(phosphatidylinositol-3,5-bisphosphate binding)|interpro:IPR002715(Nascent polypeptide-associated complex NAC)|interpro:IPR009060(UBA-like)|interpro:IPR016641(Nascent polypeptide-associated complex, alpha subunit)|interpro:IPR038187|interpro:IPR044034	-	-	crc64:86CE0C4E6194C286	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:IjsgR+hZDgTQDvy2Wf8JEX4kF+A559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P05736	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15328|uniprotkb:D6VTR2	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rl2_yeast(display_long)|uniprotkb:RPL2A(gene name)|psi-mi:RPL2A(display_short)|uniprotkb:RPL5B(gene name synonym)|uniprotkb:YFR031C-A(locus name)|uniprotkb:YFR031BC(orf name)|uniprotkb:RPL2B(gene name)|psi-mi:RPL2B(display_short)|uniprotkb:RPL5A(gene name synonym)|uniprotkb:YIL018W(locus name)|uniprotkb:L5(gene name synonym)|uniprotkb:YL6(gene name synonym)|uniprotkb:RP8(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	sgd:S000002104(RPL2A)|sgd:S000001280(RPL2B)|interpro:IPR002171(Ribosomal protein L2)|go:"GO:0019843"(rRNA binding)|rcsb pdb:1K5Y|rcsb pdb:1S1I|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014726(Ribosomal protein L2, domain 3)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|interpro:IPR016027(Nucleic acid-binding, OB-fold-like)|interpro:IPR008991(Translation protein SH3-like)|rcsb pdb:3IZS|rcsb pdb:3O58|rcsb pdb:3O5H|interpro:IPR022666|interpro:IPR022669|interpro:IPR022671|interpro:IPR014722(Translation protein SH3-like, subgroup)|refseq:NP_012246.1|refseq:NP_116688.1	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:Vd6tppKd1wRDq/TUYF6RZv6Fh1k559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P38431	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-9038|ensemblfungi:YPR041W|uniprotkb:D6W450	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:if5_yeast(display_long)|uniprotkb:YP3085.05(orf name)|uniprotkb:YPR041W(locus name)|uniprotkb:TIF5(gene name)|psi-mi:TIF5(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	ensemblfungi:YPR041W(gene)|ensemblfungi:YPR041W_mRNA(transcript)|go:"GO:0001731"(formation of translation preinitiation complex)|go:"GO:0001732"(formation of cytoplasmic translation initiation complex)|go:"GO:0003743"(translation initiation factor activity)|go:"GO:0005092"(GDP-dissociation inhibitor activity)|go:"GO:0005096"(GTPase activator activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006446"(regulation of translational initiation)|go:"GO:0031369"(translation initiation factor binding)|go:"GO:0033290"(eukaryotic 48S preinitiation complex)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043614"(multi-eIF complex)|go:"GO:0071074"(eukaryotic initiation factor eIF2 binding)|interpro:IPR002735(Translation initiation factor IF2/IF5)|interpro:IPR003307(eIF4-gamma/eIF5/eIF2-epsilon)|interpro:IPR016021(MIF4-like, type 1/2/3)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016189(Translation initiation factor IF2/IF5, N-terminal)|interpro:IPR016190(Translation initiation factor IF2/IF5, zinc-binding)|rcsb pdb:2FUL|rcsb pdb:6FYX|rcsb pdb:6FYY|rcsb pdb:6ZU9|reactome:R-SCE-72702|go:"GO:0045947"(negative regulation of translational initiation)|refseq:NP_015366.1|sgd:S000006245|mint:P38431|dip:DIP-2303N	-	-	crc64:1A1DA563B4ED1B1F	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:I7yqtuWuWgjiLFJcsU17mCtDs2Q559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P05753	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-16145|uniprotkb:D3DLF2	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rs4_yeast(display_long)|uniprotkb:RPS4A(gene name)|psi-mi:RPS4A(display_short)|uniprotkb:RPS7B(gene name synonym)|uniprotkb:YJR145C(locus name)|uniprotkb:J2186(orf name)|uniprotkb:RPS4B(gene name)|psi-mi:RPS4B(display_short)|uniprotkb:RPS7A(gene name synonym)|uniprotkb:YHR203C(locus name)|uniprotkb:S7(gene name synonym)|uniprotkb:YS6(gene name synonym)|uniprotkb:RP5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	sgd:S000003906(RPS4A)|sgd:S000001246(RPS4B)|go:"GO:0030686"(90S preribosome)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|interpro:IPR005824(KOW)|interpro:IPR000876(Ribosomal protein S4e)|interpro:IPR002942(RNA-binding S4)|go:"GO:0019843"(rRNA binding)|interpro:IPR013845(Ribosomal protein S4e, central)|interpro:IPR013843(Ribosomal protein S4e, N-terminal)|interpro:IPR018199|rcsb pdb:3IZB|refseq:NP_012073.1|refseq:NP_012679.1	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:0/1PAh0d9haBkt8sGtOf/pKOorg559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P14126	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15364|uniprotkb:Q08459|uniprotkb:D6W2C6|ensemblfungi:YOR063W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rl3_yeast(display_long)|uniprotkb:MAK8(gene name synonym)|uniprotkb:RPL3(gene name)|psi-mi:RPL3(display_short)|uniprotkb:TCM1(gene name synonym)|uniprotkb:YOR063W(locus name)|uniprotkb:YOR29-14(orf name)|uniprotkb:YL1(gene name synonym)|uniprotkb:RP1(gene name synonym)|uniprotkb:Maintenance of killer protein 8(gene name synonym)|uniprotkb:Trichodermin resistance protein(gene name synonym)|uniprotkb:Large ribosomal subunit protein uL3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_014706.1|sgd:S000005589|interpro:IPR000597(Ribosomal protein L3)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR019926|rcsb pdb:1K5Y|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:3JCT|rcsb pdb:4U3M|rcsb pdb:4U3N|go:"GO:1990145"(maintenance of translational fidelity)|rcsb pdb:4U3U|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|ensemblfungi:YOR063W(gene)|ensemblfungi:YOR063W_mRNA(transcript)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006364"(rRNA processing)|go:"GO:0022625"(cytosolic large ribosomal subunit)|rcsb pdb:4U6F|rcsb pdb:4U56|rcsb pdb:4V4B|rcsb pdb:4V6I|rcsb pdb:4V7F|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8T|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:4V91|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGF|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5FL8|rcsb pdb:5GAK|rcsb pdb:5H4P|rcsb pdb:5I4L|rcsb pdb:5JCS|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5LYB|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5T62|rcsb pdb:5T6R|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:5TGM|rcsb pdb:5Z3G|rcsb pdb:6C0F|rcsb pdb:6ELZ|rcsb pdb:6QTZ|rcsb pdb:6R84|rcsb pdb:6EM1|rcsb pdb:6EM4|rcsb pdb:6EM5|rcsb pdb:6FT6|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HD7|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6M62|rcsb pdb:6N8J|rcsb pdb:6N8K|rcsb pdb:6N8L|rcsb pdb:6N8M|rcsb pdb:6R86|rcsb pdb:6R87|rcsb pdb:6RI5|rcsb pdb:6RZZ|rcsb pdb:6S05|rcsb pdb:6S47|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6WOO|rcsb pdb:6YLG|rcsb pdb:6YLH|rcsb pdb:6YLX|rcsb pdb:6YLY|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:7AZY|rcsb pdb:7B7D|rcsb pdb:7BT6|rcsb pdb:7BTB|rcsb pdb:7NRC|rcsb pdb:7NRD|reactome:R-SCE-156827|reactome:R-SCE-1799339|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|rcsb pdb:6N8N|rcsb pdb:6N8O|rcsb pdb:6OIG|rcsb pdb:6Q8Y|rcsb pdb:6QIK|rcsb pdb:6QT0|dip:DIP-6264N|mint:P14126	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:cQmK1aAKV5F5UvYZOCVIzkjLZtY559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P26321	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-15398|uniprotkb:D6W3N6|ensemblfungi:YPL131W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:rl5_yeast(display_long)|uniprotkb:RPL1(gene name synonym)|uniprotkb:RPL1A(gene name synonym)|uniprotkb:RPL5(gene name)|psi-mi:RPL5(display_short)|uniprotkb:YPL131W(locus name)|uniprotkb:LPI14W(orf name)|uniprotkb:L1(gene name synonym)|uniprotkb:L1a(gene name synonym)|uniprotkb:YL3(gene name synonym)|uniprotkb:Ribosomal 5S RNA-binding protein(gene name synonym)|uniprotkb:Large ribosomal subunit protein uL18(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_015194.1|sgd:S000006052|rcsb pdb:5JCS|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5T62|rcsb pdb:5JUO|rcsb pdb:5T6R|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:5TGM|rcsb pdb:6FT6|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:5JUP|rcsb pdb:6HD7|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6M62|rcsb pdb:6N8J|rcsb pdb:6N8K|rcsb pdb:6N8L|rcsb pdb:6N8M|rcsb pdb:6N8N|rcsb pdb:5JUS|rcsb pdb:6N8O|rcsb pdb:6OIG|rcsb pdb:6Q8Y|rcsb pdb:6QIK|rcsb pdb:6QT0|rcsb pdb:5JUT|rcsb pdb:6QTZ|rcsb pdb:6R84|rcsb pdb:6R86|rcsb pdb:5JUU|rcsb pdb:6R87|rcsb pdb:6RI5|rcsb pdb:6RZZ|rcsb pdb:6S05|rcsb pdb:6S47|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6WOO|rcsb pdb:6YLG|rcsb pdb:6YLH|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:7AZY|rcsb pdb:7B7D|rcsb pdb:7BT6|rcsb pdb:7BTB|rcsb pdb:7NRC|rcsb pdb:7NRD|reactome:R-SCE-156827|reactome:R-SCE-1799339|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|rcsb pdb:5LYB|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|ensemblfungi:YPL131W(gene)|ensemblfungi:YPL131W_mRNA(transcript)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0008097"(5S rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR005485(Ribosomal protein L5, eukaryotic)|interpro:IPR025607|rcsb pdb:1K5Y|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:3JCT|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V4B|rcsb pdb:4V6I|rcsb pdb:4V7F|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8T|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:4V91|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGF|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5FL8|rcsb pdb:5GAK|rcsb pdb:5H4P|rcsb pdb:5I4L|dip:DIP-1790N|mint:P26321	-	-	crc64:14E3B2931C3CAE2B	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:kfPHA9QqN+B0uZ7fsxigahqU9CQ559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P53044	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-19997|uniprotkb:D6VUI5|uniprotkb:Q45U36|ensemblfungi:YGR048W	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:ufd1_yeast(display_long)|uniprotkb:UFD1(gene name)|psi-mi:UFD1(display_short)|uniprotkb:PIP3(gene name synonym)|uniprotkb:Polymerase-interacting protein 3(gene name synonym)|uniprotkb:YGR048W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_011562.1|sgd:S000003280|go:"GO:0006274"(DNA replication termination)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072665"(protein localization to vacuole)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR004854(Ubiquitin fusion degradation protein UFD1)|interpro:IPR042299|rcsb pdb:1ZC1|rcsb pdb:6JWJ|reactome:R-SCE-110320|ensemblfungi:YGR048W(gene)|ensemblfungi:YGR048W_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|dip:DIP-1476N|mint:P53044	-	-	crc64:198E0CD48B863B98	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:u/YG6aRuJ38NLsxGkUsfM9nXAnU559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q05468	uniprotkb:P38988	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	intact:EBI-24559|uniprotkb:D6VRF6|ensemblfungi:YDL198C	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:ggc1_yeast(display_long)|uniprotkb:GGC1(gene name)|psi-mi:GGC1(display_short)|uniprotkb:SHM1(gene name synonym)|uniprotkb:YDL198C(locus name)|uniprotkb:D1214(orf name)|uniprotkb:YHM1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554533|imex:IM-18700-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	refseq:NP_010083.1|sgd:S000002357|dip:DIP-7756N|mint:P38988|ensemblfungi:YDL198C(gene)|ensemblfungi:YDL198C_mRNA(transcript)|go:"GO:0000002"(mitochondrial genome maintenance)|go:"GO:0001408"(guanine nucleotide transport)|go:"GO:0001409"(guanine nucleotide transmembrane transporter activity)|go:"GO:0005739"(mitochondrion)|go:"GO:0005743"(mitochondrial inner membrane)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR018108|interpro:IPR023395	-	-	-	figure legend:Figs. 3A, 3B, Supp Fig. 3A, 3B|comment:"Protein components of the 60S ribosomal subunit (36 out of 42 total and four members of the 40S ribosomal subunit) were present in the immunoprecipitate but most of these could not be ascribed to a single gene product because of the high number of duplicated gene coding for the protein components of this organelle."|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC..|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	rogid:FHknYM2avGc4qOGauYRFeTgf4xA559292	intact-crc:5482407CD339E9C0|rigid:MxvFjQi6w8BRV62V5CdSKIzrxew	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:P38011	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-7405|uniprotkb:Q6LAA5|uniprotkb:D6VZT9|ensemblfungi:YMR116C	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:gblp_yeast(display_long)|uniprotkb:ASC1(gene name)|psi-mi:ASC1(display_short)|uniprotkb:CPC2(gene name synonym)|uniprotkb:Receptor of activated protein kinase C 1(gene name synonym)|uniprotkb:Receptor for activated C kinase(gene name synonym)|uniprotkb:Small ribosomal subunit protein RACK1(gene name synonym)|uniprotkb:YM9718.15C(orf name)|uniprotkb:YMR116C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	refseq:NP_013834.1|sgd:S000004722|mint:P38011|dip:DIP-6465N|ensemblfungi:YMR116C(gene)|ensemblfungi:YMR116C_mRNA(transcript)|go:"GO:0001403"(invasive growth in response to glucose limitation)|go:"GO:0001934"(positive regulation of protein phosphorylation)|go:"GO:0001965"(G-protein alpha-subunit binding)|go:"GO:0005080"(protein kinase C binding)|go:"GO:0005092"(GDP-dissociation inhibitor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0007186"(G protein-coupled receptor signaling pathway)|go:"GO:0008104"(protein localization)|go:"GO:0010629"(negative regulation of gene expression)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0043022"(ribosome binding)|go:"GO:0061157"(mRNA destabilization)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:0080135"(regulation of cellular response to stress)|go:"GO:1902660"(negative regulation of glucose mediated signaling pathway)|go:"GO:2001125"(negative regulation of translational frameshifting)|interpro:IPR001680(WD40 repeat)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322|rcsb pdb:1TRJ|rcsb pdb:3FRX|rcsb pdb:3J6X|rcsb pdb:3J6Y|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:3RFG|rcsb pdb:3RFH|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|rcsb pdb:4U4O|rcsb pdb:4U4Q|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V6I|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:4V92|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGF|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5I4L|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5LYB|rcsb pdb:5M1J|rcsb pdb:5MC6|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5NDV|rcsb pdb:5NDW|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:5TGM|rcsb pdb:6FAI|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6Q8Y|rcsb pdb:6RBE|rcsb pdb:6S47|rcsb pdb:6SNT|rcsb pdb:6SV4|rcsb pdb:6T4Q|rcsb pdb:6T7I|rcsb pdb:6T7T|rcsb pdb:6T83|rcsb pdb:6TB3|rcsb pdb:6TNU|rcsb pdb:6WDR|rcsb pdb:6WOO|rcsb pdb:6XIQ|rcsb pdb:6XIR|rcsb pdb:6Z6J|rcsb pdb:6Z6K|rcsb pdb:6ZCE|rcsb pdb:6ZU9|rcsb pdb:6ZVI|rcsb pdb:7A1G|rcsb pdb:7NRC|rcsb pdb:7NRD|rcsb pdb:7B7D	-	crc64:C0ADE76922F26BE0	crc64:B9A5D4959A3C54FB	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:T9ugPN58tGKmSOjRbv1bD1rznH8559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:Q05468	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-32961|uniprotkb:D6VSW5|ensemblfungi:YDR333C	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:rqc1_yeast(display_long)|uniprotkb:RQC1(gene name)|psi-mi:RQC1(display_short)|uniprotkb:YDR333C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	sgd:S000002741|refseq:NP_010620.3|dip:DIP-4004N|ensemblfungi:YDR333C(gene)|ensemblfungi:YDR333C_mRNA(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR006994(Basic helix-loop-helix, Nulp1-type)	-	crc64:C0ADE76922F26BE0	-	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:x0o3N+DMaXJezmfj7grQUi76nEM559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:P33755	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-12193|uniprotkb:D6VQG6|ensemblfungi:YBR170C	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:npl4_yeast(display_long)|uniprotkb:NPL4(gene name)|psi-mi:NPL4(display_short)|uniprotkb:YBR170C(locus name)|uniprotkb:YBR1231(orf name)|uniprotkb:HRD4(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 4(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	ensemblfungi:YBR170C(gene)|ensemblfungi:YBR170C_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006274"(DNA replication termination)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031965"(nuclear membrane)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0042175"(nuclear outer membrane-endoplasmic reticulum membrane network)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0051028"(mRNA transport)|go:"GO:0051228"(mitotic spindle disassembly)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072665"(protein localization to vacuole)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR007716(NPL4, zinc-binding putative)|go:"GO:0043130"(ubiquitin binding)|interpro:IPR016563(Polyubiquitin-tagged protein recognition complex, Npl4 component)|interpro:IPR029071|interpro:IPR037518|rcsb pdb:6JWH|rcsb pdb:6JWI|rcsb pdb:6JWJ|interpro:IPR007717(NPL4)|rcsb pdb:6OA9|rcsb pdb:6OAA|reactome:R-SCE-110320|refseq:NP_009729.1|sgd:S000000374|dip:DIP-1475N|mint:P33755	-	crc64:C0ADE76922F26BE0	crc64:6EF35D21338EE07E	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:2+0sYJtYCsEX5lm8Tk91hNDj8II559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:P25694	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-4308|ensemblfungi:YDL126C|uniprotkb:D6VRM4	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:cdc48_yeast(display_long)|uniprotkb:CDC48(gene name)|psi-mi:CDC48(display_short)|uniprotkb:Cell division cycle protein 48(gene name synonym)|uniprotkb:Transitional endoplasmic reticulum ATPase homolog(gene name synonym)|uniprotkb:YDL126C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	refseq:NP_010157.1|sgd:S000002284|ensemblfungi:YDL126C(gene)|ensemblfungi:YDL126C_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|dip:DIP-2704N|mint:P25694|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005739"(mitochondrion)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0006274"(DNA replication termination)|go:"GO:0010636"(positive regulation of mitochondrial fusion)|go:"GO:0016236"(macroautophagy)|go:"GO:0016320"(endoplasmic reticulum membrane fusion)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0034517"(ribophagy)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043328"(protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)|go:"GO:0043332"(mating projection tip)|go:"GO:0043624"|go:"GO:0046034"(ATP metabolic process)|go:"GO:0051228"(mitotic spindle disassembly)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071630"(nuclear protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:0097352"(autophagosome maturation)|go:"GO:0120174"(stress-induced homeostatically regulated protein degradation pathway)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|go:"GO:1990171"(SCF complex disassembly in response to cadmium stress)|go:"GO:2001168"(positive regulation of histone H2B ubiquitination)|interpro:IPR003338(AAA ATPase VAT, N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR004201(Cell division protein 48, CDC48, domain 2)|interpro:IPR005938(AAA ATPase, CDC48)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR015415(Vps4 oligomerisation, C-terminal)|interpro:IPR027417|interpro:IPR029067|interpro:IPR041569|rcsb pdb:6OA9|rcsb pdb:6OAA|rcsb pdb:6OAB|rcsb pdb:6OMB|rcsb pdb:6OPC|reactome:R-SCE-110320|reactome:R-SCE-3371511|reactome:R-SCE-532668|reactome:R-SCE-5358346|reactome:R-SCE-5689896|reactome:R-SCE-6798695|reactome:R-SCE-8876725	-	crc64:C0ADE76922F26BE0	crc64:02ADDB9A227614D8	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:qM/04kWcyjkQ3QCa3WklyvhNigE559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:Q04781	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-3773151|uniprotkb:Q04029|uniprotkb:D6W074|ensemblfungi:YMR247C	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:ltn1_yeast(display_long)|uniprotkb:RING-type E3 ubiquitin transferase listerin(gene name synonym)|uniprotkb:YM9408.09C(orf name)|uniprotkb:YM9920.01C(orf name)|uniprotkb:YMR247C(locus name)|uniprotkb:RKR1(gene name)|psi-mi:RKR1(display_short)|uniprotkb:LTN1(gene name synonym)|uniprotkb:RING domain mutant killed by rtf1 deletion protein 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	reactome:R-SCE-983168|interpro:IPR039795|interpro:IPR039804|interpro:IPR011016(Zinc finger, variant RING-type)|refseq:NP_013975.1|sgd:S000004861|interpro:IPR016024(Armadillo-type fold)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|ensemblfungi:YMR247C(gene)|ensemblfungi:YMR247C_mRNA(transcript)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0006348"|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0010498"(proteasomal protein catabolic process)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0030163"(protein catabolic process)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|rcsb pdb:5FG0|rcsb pdb:5FG1	-	crc64:C0ADE76922F26BE0	-	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:DKwbRS7LCtIBQA/PtCdCTvAg3DQ559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:P53044	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-19997|uniprotkb:D6VUI5|uniprotkb:Q45U36|ensemblfungi:YGR048W	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:ufd1_yeast(display_long)|uniprotkb:UFD1(gene name)|psi-mi:UFD1(display_short)|uniprotkb:PIP3(gene name synonym)|uniprotkb:Polymerase-interacting protein 3(gene name synonym)|uniprotkb:YGR048W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	refseq:NP_011562.1|sgd:S000003280|go:"GO:0006274"(DNA replication termination)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072665"(protein localization to vacuole)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR004854(Ubiquitin fusion degradation protein UFD1)|interpro:IPR042299|rcsb pdb:1ZC1|rcsb pdb:6JWJ|reactome:R-SCE-110320|ensemblfungi:YGR048W(gene)|ensemblfungi:YGR048W_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|dip:DIP-1476N|mint:P53044	-	crc64:C0ADE76922F26BE0	crc64:198E0CD48B863B98	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:u/YG6aRuJ38NLsxGkUsfM9nXAnU559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q12532	uniprotkb:P05317	intact:EBI-33283|uniprotkb:D6W403|ensemblfungi:YPL009C	intact:EBI-15447|uniprotkb:D6VYX8|ensemblfungi:YLR340W	psi-mi:rqc2_yeast(display_long)|uniprotkb:RQC2(gene name)|psi-mi:RQC2(display_short)|uniprotkb:TAE2(gene name synonym)|uniprotkb:Translation-associated element 2(gene name synonym)|uniprotkb:YP8132.04C(orf name)|uniprotkb:YPL009C(locus name)	psi-mi:rla0_yeast(display_long)|uniprotkb:RPP0(gene name)|psi-mi:RPP0(display_short)|uniprotkb:L10E(gene name synonym)|uniprotkb:RPA0(gene name synonym)|uniprotkb:RPL10E(gene name synonym)|uniprotkb:RPLA0(gene name synonym)|uniprotkb:YLR340W(locus name)|uniprotkb:L8300.8(orf name)|uniprotkb:L10e(gene name synonym)|uniprotkb:Large ribosomal subunit protein uL10(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Brandman et al. (2012)	pubmed:23178123|imex:IM-18700	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-6554563|imex:IM-18700-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_015316.1|sgd:S000005930|mint:Q12532|dip:DIP-6570N|ensemblfungi:YPL009C(gene)|ensemblfungi:YPL009C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0010494"(cytoplasmic stress granule)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0043043"(peptide biosynthetic process)|go:"GO:0072344"(rescue of stalled ribosome)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|interpro:IPR008532(Protein of unknown function DUF814)|interpro:IPR021846	refseq:NP_013444.1|sgd:S000004332|rcsb pdb:4U4Q|rcsb pdb:4U4O|rcsb pdb:4U4R|rcsb pdb:4U4U|rcsb pdb:4U4Y|rcsb pdb:4U4Z|rcsb pdb:4U50|rcsb pdb:4U51|rcsb pdb:4U52|rcsb pdb:4U53|rcsb pdb:4U55|rcsb pdb:4U56|rcsb pdb:4U6F|rcsb pdb:4V6I|rcsb pdb:4V7R|rcsb pdb:4V88|rcsb pdb:4V8T|rcsb pdb:4V8Y|rcsb pdb:4V8Z|rcsb pdb:5APN|rcsb pdb:5APO|rcsb pdb:5DAT|rcsb pdb:5DC3|rcsb pdb:5DGE|rcsb pdb:5DGV|rcsb pdb:5FCI|rcsb pdb:5FCJ|rcsb pdb:5I4L|rcsb pdb:5JUO|rcsb pdb:5JUP|rcsb pdb:5JUS|rcsb pdb:5JUT|rcsb pdb:5JUU|rcsb pdb:5LYB|rcsb pdb:5MEI|rcsb pdb:5NDG|rcsb pdb:5OBM|rcsb pdb:5ON6|rcsb pdb:5TBW|rcsb pdb:5TGA|rcsb pdb:6GQ1|rcsb pdb:6GQB|rcsb pdb:6GQV|rcsb pdb:6HHQ|rcsb pdb:6I7O|rcsb pdb:6OIG|rcsb pdb:6R84|rcsb pdb:6R86|rcsb pdb:6R87|rcsb pdb:6SV4|rcsb pdb:6T83|rcsb pdb:6WOO|reactome:R-SCE-156827|reactome:R-SCE-1799339|reactome:R-SCE-72689|reactome:R-SCE-72706|reactome:R-SCE-975956|reactome:R-SCE-975957|ensemblfungi:YLR340W(gene)|ensemblfungi:YLR340W_mRNA(transcript)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0030686"(90S preribosome)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001790(Ribosomal protein L10)|interpro:IPR030670|interpro:IPR040637|interpro:IPR043141|interpro:IPR043164|rcsb pdb:3J16|rcsb pdb:3J77|rcsb pdb:3J78|rcsb pdb:4U3M|rcsb pdb:4U3N|rcsb pdb:4U3U|rcsb pdb:4U4N|dip:DIP-1582N|mint:P05317	-	crc64:C0ADE76922F26BE0	crc64:109ECC90F7C8B68E	figure legend:Figs. 3B, Supp Fig. 3B|comment:Rqc1 and Ltn1 were required for recruitment of Cdc48 and its cofactors to the RQC.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2013/03/04	2014/10/16	rogid:HeNNocT30IWWpF8oqP6Y0m2JyY0559292	rogid:tDFq7ONYYye6eh1DSwk1MccaBfo559292	intact-crc:E8A2631F2958DEF3|rigid:VK+BxM4FFgwrx1CyKDH7mN2RPKk	false	flag tag:c-c	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)