#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:Q9ZVD0 uniprotkb:Q5YDB6 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0663"(confocal microscopy) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0403"(colocalization) psi-mi:"MI:0469"(IntAct) intact:EBI-6553296|imex:IM-18694-2 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" go:"GO:0005634"(nucleus) - - figure legend:Fig. 3A, Supp. Fig. 3B, 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4100(nicbe-leaf)|taxid:4100(Nicotiana benthamiana leaf) - 2013/02/28 2014/10/16 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:B5CF5FAB96CC6F34|rigid:umgUQxkVIWY0KrsfPQAXxIxtTB4 false mcherry fluorescent protein tag:c-c enhanced green fluorescent protein tag:c-c - - psi-mi:"MI:0867"(tag visualisation by fluorescence) psi-mi:"MI:0867"(tag visualisation by fluorescence) uniprotkb:Q9SP32 uniprotkb:Q5YDB6 intact:EBI-632627|uniprotkb:Q9FDY6|uniprotkb:Q9MAN0|ensemblplants:AT1G01040.1 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:dcl1_arath(display_long)|uniprotkb:Protein CARPEL FACTORY(gene name synonym)|uniprotkb:Protein SHORT INTEGUMENTS 1(gene name synonym)|uniprotkb:Protein SUSPENSOR 1(gene name synonym)|uniprotkb:DCL1(gene name)|psi-mi:DCL1(display_short)|uniprotkb:ASU1(gene name synonym)|uniprotkb:SUS1(gene name synonym)|uniprotkb:At1g01040(locus name)|uniprotkb:T25K16.4(orf name)|uniprotkb:CAF SIN1(gene name synonym)|uniprotkb:Dicer-like protein 1(gene name synonym)|uniprotkb:Protein ABNORMAL SUSPENSOR 1(gene name synonym) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0663"(confocal microscopy) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0403"(colocalization) psi-mi:"MI:0469"(IntAct) intact:EBI-6553274|imex:IM-18694-1 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_171612.1|ensemblplants:AT1G01040(gene)|ensemblplants:AT1G01040.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004386"(helicase activity)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0046872"(metal ion binding)|interpro:IPR000999(Ribonuclease III)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR005034(Protein of unknown function DUF283)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR011907(Ribonuclease III, bacterial)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR027417|interpro:IPR036085|interpro:IPR036389|interpro:IPR038248|rcsb pdb:2LRS|dip:DIP-33454N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3A, Supp. Fig. 3B, 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4100(nicbe-leaf)|taxid:4100(Nicotiana benthamiana leaf) - 2013/02/28 2014/10/16 rogid:LkUCHo3RF/ObnDA8H1bUySrdID43702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:4CD09BAFCF65C0D2|rigid:F5wB/ks9JusP9EGnq9ZUypjaEmU false mcherry fluorescent protein tag:n-n enhanced green fluorescent protein tag:c-c - - psi-mi:"MI:0867"(tag visualisation by fluorescence) psi-mi:"MI:0867"(tag visualisation by fluorescence) uniprotkb:Q5YDB6 uniprotkb:O04492 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0663"(confocal microscopy) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0403"(colocalization) psi-mi:"MI:0469"(IntAct) intact:EBI-6553336|imex:IM-18694-3 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3A, Supp. Fig. 3B, 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4100(nicbe-leaf)|taxid:4100(Nicotiana benthamiana leaf) - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:755C0F18118DC6D0|rigid:sOunqrSOUVjhx3vhA8Y0YILITNs false enhanced green fluorescent protein tag:c-c mcherry fluorescent protein tag:c-c - - psi-mi:"MI:0867"(tag visualisation by fluorescence) psi-mi:"MI:0867"(tag visualisation by fluorescence) uniprotkb:O04492 uniprotkb:Q9ZVD0 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:"MI:0809"(bimolecular fluorescence complementation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553417|imex:IM-18694-9 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N go:"GO:0005634"(nucleus) - - figure legend:Fig. 3D|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4100(nicbe-leaf)|taxid:4100(Nicotiana benthamiana leaf) - 2013/02/28 2014/10/16 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 intact-crc:E03D30BD72B6021B|rigid:WAu91POE5nDbWW5VOkgpcIGjiFM false cYFP:?-? nYFP:?-? - - psi-mi:"MI:0867"(tag visualisation by fluorescence) psi-mi:"MI:0867"(tag visualisation by fluorescence) uniprotkb:Q9ZVD0 uniprotkb:Q5YDB6 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0809"(bimolecular fluorescence complementation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553408|imex:IM-18694-8 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" go:"GO:0005634"(nucleus) - - figure legend:Fig. 3D|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4100(nicbe-leaf)|taxid:4100(Nicotiana benthamiana leaf) - 2013/02/28 2014/10/16 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:92D82A1508D73685|rigid:umgUQxkVIWY0KrsfPQAXxIxtTB4 false cYFP:?-? nYFP:?-? - - psi-mi:"MI:0867"(tag visualisation by fluorescence) psi-mi:"MI:0867"(tag visualisation by fluorescence) uniprotkb:Q5YDB6 uniprotkb:O04492 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0809"(bimolecular fluorescence complementation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553399|imex:IM-18694-7 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3D|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4100(nicbe-leaf)|taxid:4100(Nicotiana benthamiana leaf) - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:FD3FA8CD76C7CEEE|rigid:sOunqrSOUVjhx3vhA8Y0YILITNs false nYFP:?-? cYFP:c-c - - psi-mi:"MI:0867"(tag visualisation by fluorescence) psi-mi:"MI:0867"(tag visualisation by fluorescence) uniprotkb:O04492 uniprotkb:Q5YDB6 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0588"(three hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553493|imex:IM-18694-13 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" - - - figure legend:Fig. 4B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:26EEBFA23E84B21F|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O04492 uniprotkb:Q9ZVD0 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:"MI:0588"(three hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553493|imex:IM-18694-13 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0684"(ancillary) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N - - - figure legend:Fig. 4B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 intact-crc:26EEBFA23E84B21F|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q5YDB6 uniprotkb:O04492 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0588"(three hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553475|imex:IM-18694-11 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N - - - figure legend:Fig. 4B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:7139FA424F3B6D27|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q5YDB6 uniprotkb:Q9ZVD0 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:"MI:0588"(three hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553475|imex:IM-18694-11 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0684"(ancillary) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N - - - figure legend:Fig. 4B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 intact-crc:7139FA424F3B6D27|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q5YDB6 uniprotkb:O04492 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553512|imex:IM-18694-15 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N - - - figure legend:Fig. 5A|comment:The hypophosphorylated form of HYL1 is enriched in the immunoprecipitate.|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:9FEDBBAB324C8AE7|rigid:sOunqrSOUVjhx3vhA8Y0YILITNs false enhanced green fluorescent protein tag:c-c - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:O04492 uniprotkb:Q5YDB6 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553373|imex:IM-18694-5 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:7D67C471E0954238|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - enhanced green fluorescent protein tag:c-c - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:O04492 uniprotkb:Q9ZVD0 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553373|imex:IM-18694-5 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 intact-crc:7D67C471E0954238|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q9ZVD0 uniprotkb:O04492 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553382|imex:IM-18694-6 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:45619BFAA2BFE30C|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q9ZVD0 uniprotkb:Q5YDB6 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553382|imex:IM-18694-6 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:45619BFAA2BFE30C|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false - enhanced green fluorescent protein tag:c-c - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q5YDB6 uniprotkb:Q9ZVD0 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553354|imex:IM-18694-4 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 intact-crc:2808C3A8ACCC662F|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false enhanced green fluorescent protein tag:c-c - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q5YDB6 uniprotkb:O04492 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553354|imex:IM-18694-4 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N go:"GO:0016604"(nuclear body) - - figure legend:Fig. 3C|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-leaf)|taxid:3702(Arabidopsis thaliana leaf) - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:2808C3A8ACCC662F|rigid:LXtQg8Z1E7sV3YVcrQytwo1deFg false enhanced green fluorescent protein tag:c-c - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q9ZVD0 uniprotkb:Q5YDB6 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:"MI:0018"(two hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553471|imex:IM-18694-10 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" - - - figure legend:Fig. 4A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 intact-crc:1F5F06A2E5964A9E|rigid:umgUQxkVIWY0KrsfPQAXxIxtTB4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZVD0 uniprotkb:O04492 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 intact:EBI-632620|uniprotkb:C0Z3F9|ensemblplants:AT1G09700.1 psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:drb1_arath(display_long)|uniprotkb:F21M12.9(orf name)|uniprotkb:At1g09700(locus name)|uniprotkb:DRB1(gene name)|psi-mi:DRB1(display_short)|uniprotkb:HYL1(gene name synonym)|uniprotkb:Protein HYPONASTIC LEAVES 1(gene name synonym)|uniprotkb:dsRNA-binding protein 1(gene name synonym) psi-mi:"MI:0018"(two hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553480|imex:IM-18694-12 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N refseq:NP_563850.1|go:"GO:0010305"(leaf vascular tissue pattern formation)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0010589"(leaf proximal/distal pattern formation)|go:"GO:0016607"(nuclear speck)|ensemblplants:AT1G09700(gene)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0031054"(pre-miRNA processing)|go:"GO:0035196"(production of miRNAs involved in gene silencing by miRNA)|go:"GO:0035198"(miRNA binding)|go:"GO:0035279"(miRNA-mediated gene silencing by mRNA destabilization)|go:"GO:0042802"(identical protein binding)|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR044450|interpro:IPR044451|rcsb pdb:2L2M|rcsb pdb:2L2N|rcsb pdb:3ADG|rcsb pdb:3ADI|rcsb pdb:3ADJ|ensemblplants:AT1G09700.1(transcript)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005634"(nucleus)|go:"GO:0006396"(RNA processing)|go:"GO:0009733"(response to auxin)|go:"GO:0009735"(response to cytokinin)|go:"GO:0009737"(response to abscisic acid)|go:"GO:0010267"(primary ta-siRNA processing)|dip:DIP-33453N - - - figure legend:Fig. 4A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 rogid:dQQshDxymcFWQ+N4wJgAoOZ10/Y3702 intact-crc:A16815B558A67DB1|rigid:WAu91POE5nDbWW5VOkgpcIGjiFM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q5YDB6 uniprotkb:Q9ZVD0 intact:EBI-1786459|uniprotkb:Q0WNZ7|uniprotkb:Q56WT8|uniprotkb:Q9SVT0|intact:EBI-2298955|ensemblplants:AT4G21670.1 intact:EBI-6553299|ensemblplants:AT2G27100.1|uniprotkb:Q93W84 psi-mi:cpl1_arath(display_long)|uniprotkb:CPL1(gene name)|psi-mi:CPL1(display_short)|uniprotkb:FRY2(gene name synonym)|uniprotkb:JOE1(gene name synonym)|uniprotkb:Carboxyl-terminal phosphatase-like 1(gene name synonym)|uniprotkb:Protein JASMONATE OVEREXPRESSING 1(gene name synonym)|uniprotkb:Protein FIERY 2(gene name synonym)|uniprotkb:Protein SHINY 4(gene name synonym)|uniprotkb:SHI4(gene name synonym)|uniprotkb:F17L22.130(orf name)|uniprotkb:At4g21670(locus name) psi-mi:srrt_arath(display_long)|uniprotkb:SE(gene name)|psi-mi:SE(display_short)|uniprotkb:T20P8.15(orf name)|uniprotkb:At2g27100(locus name) psi-mi:"MI:0018"(two hybrid) Manavella et al. (2012) pubmed:23141542|imex:IM-18694 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-6553498|imex:IM-18694-14 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_193898.3|interpro:IPR014720(Double-stranded RNA-binding-like)|interpro:IPR004274(NLI interacting factor)|interpro:IPR036412|interpro:IPR039189|ensemblplants:AT4G21670(gene)|ensemblplants:AT4G21670.1(transcript)|go:"GO:0000184"(nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)|go:"GO:0003723"(RNA binding)|go:"GO:0004647"|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0008420"(RNA polymerase II CTD heptapeptide repeat phosphatase activity)|go:"GO:0009611"(response to wounding)|go:"GO:0009651"(response to salt stress)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0016607"(nuclear speck)|go:"GO:0016791"(phosphatase activity)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|go:"GO:0106306"|go:"GO:0106307" ensemblplants:AT2G27100(gene)|ensemblplants:AT2G27100.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005846"(nuclear cap binding complex)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0010267"(primary ta-siRNA processing)|go:"GO:0010445"(nuclear dicing body)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0031053"(primary miRNA processing)|go:"GO:0046872"(metal ion binding)|go:"GO:0048367"(shoot system development)|go:"GO:0048509"(regulation of meristem development)|go:"GO:2000011"(regulation of adaxial/abaxial pattern formation)|interpro:IPR007042(Arsenite-resistance protein 2)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR021933|interpro:IPR039727|rcsb pdb:3AX1|refseq:NP_565635.1|dip:DIP-58979N - - - figure legend:Supp. Fig. 4|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2013/02/28 2014/10/16 rogid:BGeun33UjOw0qhwgf98EzEI4ujw3702 rogid:m4VtGqzs0rF/6h8+ejzbofjC5yg3702 intact-crc:1E70F46C29322B0B|rigid:umgUQxkVIWY0KrsfPQAXxIxtTB4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)