#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:O80536 uniprotkb:P14713 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0 psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Huq et al. (2004) pubmed:15448264 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-630831 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N - - - comment:"PIF3 preferentially interacts with the Pfr (biologically active) form of PhyB" taxid:-1(in vitro)|taxid:-1(In vitro) - 2005/08/04 2014/10/16 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702 intact-crc:CFF02B8ABAF5A36D|rigid:LfjOPyCnKAsO/qaATKS4ceaU5DQ false 35s radiolabel:?-?|tag:?-? 35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P14713 uniprotkb:Q8W2F3-2 intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0 intact:EBI-625732 psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name) psi-mi:q8w2f3-2(display_long)|uniprotkb:PIF4(gene name)|psi-mi:PIF4(display_short)|uniprotkb:BHLH9(gene name synonym)|uniprotkb:EN102(gene name synonym)|uniprotkb:SRL2(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 9(gene name synonym)|uniprotkb:Phytochrome-interacting factor 4(gene name synonym)|uniprotkb:Short under red-light 2(gene name synonym)|uniprotkb:Transcription factor EN 102(gene name synonym)|uniprotkb:bHLH transcription factor bHLH009(gene name synonym)|uniprotkb:MFL8.13(orf name)|uniprotkb:At2g43010(locus name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Huq et al. (2004) pubmed:15448264 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-630843 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N intact:EBI-625716(pif4_arath) - - - comment:"PIF4 preferentially interacts with the Pfr (biologically active) form of PhyB" taxid:-1(in vitro)|taxid:-1(In vitro) - 2005/08/04 2014/10/16 rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702 rogid:5Wu+iieWeeM7VG1pxEG/9mEQtCI3702 intact-crc:59026570C561B196|rigid:JdDZuSrq2AZmPFuyU0U2pPSSpvE false 35s radiolabel:?-? 35s radiolabel:?-?|tag:c-c - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P14712 uniprotkb:O80536 intact:EBI-624446|ensemblplants:AT1G09570.5|ensemblplants:AT1G09570.6|ensemblplants:AT1G09570.1|ensemblplants:AT1G09570.4|uniprotkb:B3H6K9 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:phya_arath(display_long)|uniprotkb:PHYA(gene name)|psi-mi:PHYA(display_short)|uniprotkb:HY8(gene name synonym)|uniprotkb:At1g09570(locus name)|uniprotkb:F14J9.23(orf name)|uniprotkb:FHY2(gene name synonym)|uniprotkb:FRE1(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED HYPOCOTYL 2(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED 1(gene name synonym)|uniprotkb:Protein ELONGATED HYPOCOTYL 8(gene name synonym) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Huq et al. (2004) pubmed:15448264 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-630855 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G09570.4(transcript)|ensemblplants:AT1G09570.5(transcript)|ensemblplants:AT1G09570.6(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0003729"(mRNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010201"(response to continuous far red light stimulus by the high-irradiance response system)|go:"GO:0010203"(response to very low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0046685"(response to arsenic-containing substance)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|ensemblplants:AT1G09570(gene)|ensemblplants:AT1G09570.1(transcript)|refseq:NP_001117256.1|refseq:NP_172428.1|refseq:NP_001322907.1|refseq:NP_001322908.1|refseq:NP_001322909.1|dip:DIP-33461N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - comment:"PIF3 preferentially interacts with the Pfr (biologically active) form of PhyA" taxid:-1(in vitro)|taxid:-1(In vitro) - 2005/08/04 2014/10/16 rogid:CKVh1QT3o0sJCwH/6XMG4NRoSnE3702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:E2A52472E7AF32A9|rigid:fXp9ZsM3nSWae9yTEAqDxnOAwf4 false 35s radiolabel:?-? tag:?-?|35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8W2F3-2 uniprotkb:P14712 intact:EBI-625732 intact:EBI-624446|ensemblplants:AT1G09570.5|ensemblplants:AT1G09570.6|ensemblplants:AT1G09570.1|ensemblplants:AT1G09570.4|uniprotkb:B3H6K9 psi-mi:q8w2f3-2(display_long)|uniprotkb:PIF4(gene name)|psi-mi:PIF4(display_short)|uniprotkb:BHLH9(gene name synonym)|uniprotkb:EN102(gene name synonym)|uniprotkb:SRL2(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 9(gene name synonym)|uniprotkb:Phytochrome-interacting factor 4(gene name synonym)|uniprotkb:Short under red-light 2(gene name synonym)|uniprotkb:Transcription factor EN 102(gene name synonym)|uniprotkb:bHLH transcription factor bHLH009(gene name synonym)|uniprotkb:MFL8.13(orf name)|uniprotkb:At2g43010(locus name) psi-mi:phya_arath(display_long)|uniprotkb:PHYA(gene name)|psi-mi:PHYA(display_short)|uniprotkb:HY8(gene name synonym)|uniprotkb:At1g09570(locus name)|uniprotkb:F14J9.23(orf name)|uniprotkb:FHY2(gene name synonym)|uniprotkb:FRE1(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED HYPOCOTYL 2(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED 1(gene name synonym)|uniprotkb:Protein ELONGATED HYPOCOTYL 8(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Huq et al. (2004) pubmed:15448264 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-630869 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) intact:EBI-625716(pif4_arath) ensemblplants:AT1G09570.4(transcript)|ensemblplants:AT1G09570.5(transcript)|ensemblplants:AT1G09570.6(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0003729"(mRNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010201"(response to continuous far red light stimulus by the high-irradiance response system)|go:"GO:0010203"(response to very low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0046685"(response to arsenic-containing substance)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|ensemblplants:AT1G09570(gene)|ensemblplants:AT1G09570.1(transcript)|refseq:NP_001117256.1|refseq:NP_172428.1|refseq:NP_001322907.1|refseq:NP_001322908.1|refseq:NP_001322909.1|dip:DIP-33461N - - - comment:"PIF4 preferentially interacts with the Pfr (biologically active) form of PhyA" taxid:-1(in vitro)|taxid:-1(In vitro) - 2005/08/04 2014/10/16 rogid:5Wu+iieWeeM7VG1pxEG/9mEQtCI3702 rogid:CKVh1QT3o0sJCwH/6XMG4NRoSnE3702 intact-crc:95EA703C688F7457|rigid:b6PhGOcW7Qs/Xz2hPTVkKnzBbSk false tag:c-c|35s radiolabel:?-? 35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P14713 uniprotkb:Q8GZM7 intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Huq et al. (2004) pubmed:15448264 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-630883 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - comment:"PIF1 preferentially interacts with the Pfr (biologically active) form of PhyB" taxid:-1(in vitro)|taxid:-1(In vitro) - 2005/08/04 2014/10/16 rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:8F095E011A657AA1|rigid:VIL/3M4OjlJQpTNWrtETQ+rDDKM false 35s radiolabel:?-? tag:?-?|35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:P14712 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-624446|ensemblplants:AT1G09570.5|ensemblplants:AT1G09570.6|ensemblplants:AT1G09570.1|ensemblplants:AT1G09570.4|uniprotkb:B3H6K9 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:phya_arath(display_long)|uniprotkb:PHYA(gene name)|psi-mi:PHYA(display_short)|uniprotkb:HY8(gene name synonym)|uniprotkb:At1g09570(locus name)|uniprotkb:F14J9.23(orf name)|uniprotkb:FHY2(gene name synonym)|uniprotkb:FRE1(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED HYPOCOTYL 2(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED 1(gene name synonym)|uniprotkb:Protein ELONGATED HYPOCOTYL 8(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Huq et al. (2004) pubmed:15448264 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-630896 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G09570.4(transcript)|ensemblplants:AT1G09570.5(transcript)|ensemblplants:AT1G09570.6(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0003729"(mRNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010201"(response to continuous far red light stimulus by the high-irradiance response system)|go:"GO:0010203"(response to very low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0046685"(response to arsenic-containing substance)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|ensemblplants:AT1G09570(gene)|ensemblplants:AT1G09570.1(transcript)|refseq:NP_001117256.1|refseq:NP_172428.1|refseq:NP_001322907.1|refseq:NP_001322908.1|refseq:NP_001322909.1|dip:DIP-33461N - - - comment:"PIF1 preferentially interacts with the Pfr (biologically active) form of PhyA" taxid:-1(in vitro)|taxid:-1(In vitro) - 2005/08/04 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:CKVh1QT3o0sJCwH/6XMG4NRoSnE3702 intact-crc:B1CE4F9AD05B3A72|rigid:h1ww/U0gCkXBIjjz1sWoh8a8HwQ false tag:?-?|35s radiolabel:?-? 35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)