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  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>DIP</shortLabel>
        <fullName>Database of Interacting Proteins</fullName>
      </names>
      <xref>
        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
      </xref>
      <attributeList>
        <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
        <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
        <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="14567920" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-27095056" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-29264" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state.</attribute>
            <attribute name="journal" nameAc="MI:0885">Cell</attribute>
            <attribute name="publication year" nameAc="MI:0886">2003</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Lee S., Sowa ME., Watanabe YH., Sigler PB., Chiu W., Yoshida M., Tsai FT.</attribute>
            <attribute name="contact-email" nameAc="MI:0634">ftsai@bcm.tmc.edu</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959">imex curation</attribute>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="pubmed" dbAc="MI:0446" id="14567920" refType="primary-reference" refTypeAc="MI:0358"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-29264" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="300852">
            <names>
              <shortLabel>thet8</shortLabel>
              <fullName>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>x-ray diffraction</shortLabel>
            <fullName>x-ray crystallography</fullName>
            <alias type="go synonym" typeAc="MI:0303">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">x-ray diffraction</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0114" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1272" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Lee S., Sowa ME., Watanabe YH., Sigler PB., Chiu W., Yoshida M., Tsai FT.</attribute>
          <attribute name="contact-email" nameAc="MI:0634">ftsai@bcm.tmc.edu</attribute>
          <attribute name="accepted">Accepted 2021-OCT-05 AT 13:04 BST AT 13:04 BST by ORCHARD</attribute>
          <attribute name="journal" nameAc="MI:0885">Cell</attribute>
          <attribute name="publication year" nameAc="MI:0886">2003</attribute>
          <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>clpb_thet8</shortLabel>
          <fullName>Chaperone protein ClpB</fullName>
          <alias type="gene name" typeAc="MI:0301">clpB</alias>
          <alias type="locus name" typeAc="MI:0305">TTHA1487</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q9RA63" version="SP_51" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="BAD71310" version="SP_136" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="P74942" version="SP_51" refType="secondary-ac" refTypeAc="MI:0360"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="MINT-1131158" refType="intact-secondary"/>
          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="Q5SI87" version="SP_51" refType="secondary-ac" refTypeAc="MI:0360"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-7698530" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="BAD71310" version="SP_136" refType="gene"/>
          <secondaryRef db="ensemblbacteria" id="BAD71310" version="SP_136" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005524" version="SP_136"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" version="SP_136"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0009408" version="SP_136"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042026" version="SP_136"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR001270" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR003593" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR003959" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004176" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR017730" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR018368" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019489" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027417" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR028299" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036628" version="SP_136"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR041546" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1QVR" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4FCT" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4FCV" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4FCW" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4HSE" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJ4" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJ5" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJ6" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJ7" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJ8" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJ9" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4LJA" version="SP_136"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4FD2" version="SP_136"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="YP_144753.1"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="WP_011228712.1"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-41758N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="300852">
          <names>
            <shortLabel>thet8</shortLabel>
            <fullName>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</fullName>
          </names>
        </organism>
        <sequence>MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPARVEA</sequence>
        <attributeList>
          <attribute name="remark-internal">DIP protein Q9RA63 original sequence version: 92</attribute>
          <attribute name="comment" nameAc="MI:0612">mint</attribute>
          <attribute name="function" nameAc="MI:0613">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with dnaK, dnaJ and grpE. Acts before dnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of clpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by dnaK</attribute>
          <attribute name="crc64">FB9A39BB040363E0</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-29264-1">
        <names>
          <shortLabel>clpb-11</shortLabel>
        </names>
        <xref>
          <primaryRef db="wwpdb" dbAc="MI:0805" id="1QVR" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-27095129" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-29264-1" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="4">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>neutral component</shortLabel>
                  <fullName>neutral component</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0497" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-55" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <experimentalPreparationList>
              <experimentalPreparation>
                <names>
                  <shortLabel>purified</shortLabel>
                  <fullName>purified</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0350" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1537811" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalPreparation>
            </experimentalPreparationList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="83333">
                <names>
                  <shortLabel>ecoli</shortLabel>
                  <fullName>Escherichia coli (strain K12)</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
            <stoichiometry value="6"/>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
        <attributeList>
          <attribute name="figure legend" nameAc="MI:0599">Fig 2, Table 1</attribute>
        </attributeList>
      </interaction>
    </interactionList>
  </entry>
</entrySet>