<?xml version='1.0' encoding='UTF-8'?>
<entrySet xmlns="http://psi.hupo.org/mi/mif300" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/mi/mif300 https://raw.githubusercontent.com/HUPO-PSI/miXML/master/3.0/src/MIF300.xsd" level="3" version="0" minorVersion="0">
  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>DIP</shortLabel>
        <fullName>Database of Interacting Proteins</fullName>
      </names>
      <xref>
        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
      </xref>
      <attributeList>
        <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
        <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
        <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="21565698" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="doi" dbAc="MI:0574" id="10.1016/j.str.2011.03.005" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15926336" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-16156" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.</attribute>
            <attribute name="journal" nameAc="MI:0885">Structure (London, England : 1993)</attribute>
            <attribute name="publication year" nameAc="MI:0886">2011</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Zhang J.,  Ma B.,  DiMaio F.,  Douglas NR.,  Joachimiak LA.,  Baker D.,  Frydman J.,  Levitt M.,  Chiu W.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="imex" dbAc="MI:0670" id="IM-16156" refType="imex-primary" refTypeAc="MI:0662"/>
          <secondaryRef db="wwpdb" dbAc="MI:0805" id="3J03" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-218819X" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="wwpdb" dbAc="MI:0805" id="3J02" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="pubmed" dbAc="MI:0446" id="21565698" refType="primary-reference" refTypeAc="MI:0358"/>
          <secondaryRef db="doi" dbAc="MI:0574" id="10.1016/j.str.2011.03.005" refType="primary-reference" refTypeAc="MI:0358"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="562">
            <names>
              <shortLabel>ecolx</shortLabel>
              <fullName>Escherichia coli</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>3d-em</shortLabel>
            <fullName>3D electron microscopy</fullName>
            <alias type="synonym" typeAc="MI:1041">3D-EM</alias>
            <alias type="synonym" typeAc="MI:1041">electron tomog</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0410" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608522" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="12160704" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Zhang J., Ma B., DiMaio F., Douglas NR., Joachimiak LA., Baker D., Frydman J., Levitt M., Chiu W.</attribute>
          <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-218819X</attribute>
          <attribute name="journal" nameAc="MI:0885">Structure (London, England : 1993)</attribute>
          <attribute name="publication year" nameAc="MI:0886">2011</attribute>
          <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
          <attribute name="title" nameAc="MI:1091">Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>q877g8_metmi</shortLabel>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q877G8" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="MINT-8373072" refType="intact-secondary"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-7612242" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="WP_011171459.1"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005524" version="TrEMBL_135"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0006457" version="TrEMBL_135"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" version="TrEMBL_135"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0051082" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR002194" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR002423" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR012714" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR017998" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027409" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027410" version="TrEMBL_135"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027413" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IYF" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZH" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZI" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZJ" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZK" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZL" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZM" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3IZN" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3J02" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3J03" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3J3X" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3KFB" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3KFE" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3KFK" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3LOS" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3RUQ" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3RUS" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3RUV" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3RUW" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5W74" version="TrEMBL_135"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5W79" version="TrEMBL_135"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-29771N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="39152">
          <names>
            <shortLabel>metmi</shortLabel>
            <fullName>Methanococcus maripaludis</fullName>
            <alias type="synonym" typeAc="MI:1041">Methanococcus deltae</alias>
          </names>
        </organism>
        <sequence>MSQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAPDMGDMGGMPGMGGMPGMM</sequence>
        <attributeList>
          <attribute name="remark-internal">DIP protein Q877G8 original sequence version: 39</attribute>
          <attribute name="remark-internal">DIP protein Q877G8 original sequence version: 62</attribute>
          <attribute name="remark-internal">DIP protein Q877G8 original sequence version: 70</attribute>
          <attribute name="comment" nameAc="MI:0612">mint</attribute>
          <attribute name="crc64">3ED9187B0B2EEC89</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-16156-1">
        <names>
          <shortLabel>q877g8_metmi-4</shortLabel>
        </names>
        <xref>
          <primaryRef db="dip" dbAc="MI:0465" id="DIP-59257E" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15926357" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-16156-1" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="4">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="562">
                <names>
                  <shortLabel>ecolx</shortLabel>
                  <fullName>Escherichia coli</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
      </interaction>
    </interactionList>
  </entry>
</entrySet>