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<entrySet xmlns="http://psi.hupo.org/mi/mif300" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/mi/mif300 https://raw.githubusercontent.com/HUPO-PSI/miXML/master/3.0/src/MIF300.xsd" level="3" version="0" minorVersion="0">
  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>DIP</shortLabel>
        <fullName>Database of Interacting Proteins</fullName>
      </names>
      <xref>
        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
      </xref>
      <attributeList>
        <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
        <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
        <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>A selective contribution of the RIG-I-like receptor pathway to type I interferon responses activated by cytosolic DNA.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="19805092" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.0909545106" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15805006" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-15037" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">A selective contribution of the RIG-I-like receptor pathway to type I interferon responses activated by cytosolic DNA.</attribute>
            <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
            <attribute name="publication year" nameAc="MI:0886">2009</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Choi MK.,  Wang Z.,  Ban T.,  Yanai H.,  Lu Y.,  Koshiba R.,  Nakaima Y.,  Hangai S.,  Savitsky D.,  Nakasato M.,  Negishi H.,  Takeuchi O.,  Honda K.,  Akira S.,  Tamura T.,  Taniguchi T.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="imex" dbAc="MI:0670" id="IM-15037" refType="imex-primary" refTypeAc="MI:0662"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-216108X" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="pubmed" dbAc="MI:0446" id="19805092" refType="primary-reference" refTypeAc="MI:0358"/>
          <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.0909545106" refType="primary-reference" refTypeAc="MI:0358"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="10090">
            <names>
              <shortLabel>mouse</shortLabel>
              <fullName>Mus musculus</fullName>
              <alias type="synonym" typeAc="MI:1041">Mouse</alias>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>comig non denat gel</shortLabel>
            <fullName>comigration in non denaturing gel electrophoresis</fullName>
            <alias type="synonym" typeAc="MI:1041">comig non denat gel</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0404" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608489" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>western blot</shortLabel>
            <fullName>western blot</fullName>
            <alias type="go synonym" typeAc="MI:0303">Immuno blot</alias>
            <alias type="synonym" typeAc="MI:1041">Immuno blot</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0113" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-973" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Choi MK., Wang Z., Ban T., Yanai H., Lu Y., Koshiba R., Nakaima Y., Hangai S., Savitsky D., Nakasato M., Negishi H., Takeuchi O., Honda K., Akira S., Tamura T., Taniguchi T.</attribute>
          <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-216108X</attribute>
          <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
          <attribute name="publication year" nameAc="MI:0886">2009</attribute>
          <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
          <attribute name="title" nameAc="MI:1091">A selective contribution of the RIG-I-like receptor pathway to type I interferon responses activated by cytosolic DNA.</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>irf3_mouse</shortLabel>
          <fullName>Interferon regulatory factor 3</fullName>
          <alias type="gene name" typeAc="MI:0301">Irf3</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="P70671" version="SP_60" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="MINT-2737174" refType="intact-secondary"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSP00000003284" version="SP_178" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSP00000103465" version="SP_178" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSP00000146773" version="SP_178" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-7947049" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="NP_058545.1"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="XP_006541058.1"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="XP_006541059.1"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-29881N"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSG00000003184" version="SP_178" refType="gene"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUST00000003284" version="SP_178" refType="transcript"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUST00000107834" version="SP_178" refType="transcript"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUST00000209066" version="SP_178" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0000978" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0000981" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0001228" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0001819" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0002376" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005634" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005739" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005829" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0006357" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0009617" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0010468" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0019904" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0031663" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0032481" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0032496" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0032727" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0032728" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0035666" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042803" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042981" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0043123" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0043330" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0043565" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0045893" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0045944" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0050727" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0051607" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0060337" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0060340" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0071222" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0071360" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0097300" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0098586" version="SP_178"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:1990837" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR001346" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR008984" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR017855" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019471" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019817" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036388" version="SP_178"/>
          <secondaryRef db="mint" dbAc="MI:0471" id="P70671" version="SP_178"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="7JFM" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-1169408" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-1606341" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-168928" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-3134973" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-3134975" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-3270619" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-9013973" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-918233" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-933541" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-936440" version="SP_178"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-936964" version="SP_178"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036390" version="SP_178"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="10090">
          <names>
            <shortLabel>mouse</shortLabel>
            <fullName>Mus musculus</fullName>
            <alias type="synonym" typeAc="MI:1041">Mouse</alias>
          </names>
        </organism>
        <sequence>METPKPRILPWLVSQLDLGQLEGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQAWAEASGAYTPGKDKPDVSTWKRNFRSALNRKEVLRLAADNSKDPYDPHKVYEFVTPGARDFVHLGASPDTNGKSSLPHSQENLPKLFDGLILGPLKDEGSSDLAIVSDPSQQLPSPNVNNFLNPAPQENPLKQLLAEEQWEFEVTAFYRGRQVFQQTLFCPGGLRLVGSTADMTLPWQPVTLPDPEGFLTDKLVKEYVGQVLKGLGNGLALWQAGQCLWAQRLGHSHAFWALGEELLPDSGRGPDGEVHKDKDGAVFDLRPFVADLIAFMEGSGHSPRYTLWFCMGEMWPQDQPWVKRLVMVKVVPTCLKELLEMAREGGASSLKTVDLHISNSQPISLTSDQYKAYLQDLVEDMDFQATGNI</sequence>
        <attributeList>
          <attribute name="remark-internal">DIP protein P70671 original sequence version: 63</attribute>
          <attribute name="remark-internal">DIP protein P70671 original sequence version: 84</attribute>
          <attribute name="remark-internal">DIP protein P70671 original sequence version: 78</attribute>
          <attribute name="comment" nameAc="MI:0612">mint</attribute>
          <attribute name="comment" nameAc="MI:0612">homomint</attribute>
          <attribute name="function" nameAc="MI:0613">Mediates interferon-stimulated response element (ISRE) promoter activation. Functions as a molecular switch for antiviral activity. DsRNA generated during the course of an viral infection leads to IRF3 phosphorylation on the C-terminal serine/threonine cluster. This induces a conformational change, leading to its dimerization, nuclear localization and association with CREB binding protein (CREBBP) to form dsRNA-activated factor 1 (DRAF1), a complex which activates the transcription of genes under the control of ISRE. The complex binds to the IE and PRDIII regions on the IFN-alpha and IFN-beta promoters respectively. IRF-3 does not have any transcription activation domains</attribute>
          <attribute name="crc64">1FF67C4E0FC7F027</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-15037-1">
        <names>
          <shortLabel>irf3-7</shortLabel>
        </names>
        <xref>
          <primaryRef db="dip" dbAc="MI:0465" id="DIP-185612E" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15805025" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-15037-1" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="4">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="10090">
                <names>
                  <shortLabel>mouse</shortLabel>
                  <fullName>Mus musculus</fullName>
                  <alias type="synonym" typeAc="MI:1041">Mouse</alias>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>physical association</shortLabel>
            <fullName>physical association</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0915" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1813147" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
      </interaction>
    </interactionList>
  </entry>
</entrySet>