DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. Nature structural & molecular biology 2009 imex curation Guskov A., Kern J., Gabdulkhakov A., Broser M., Zouni A., Saenger W. Only protein-protein interactions thermosynechococcus elongatus thermosynechococcus elongatus x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Guskov A., Kern J., Gabdulkhakov A., Broser M., Zouni A., Saenger W. DIP original experiment: DIP-132970X Nature structural & molecular biology 2009 IMEx Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. Nature structural & molecular biology 2009 imex curation Guskov A., Kern J., Gabdulkhakov A., Broser M., Zouni A., Saenger W. Only protein-protein interactions thermosynechococcus elongatus thermosynechococcus elongatus molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column partial id prot seq partial identification of protein sequence partial id prot seq Guskov A., Kern J., Gabdulkhakov A., Broser M., Zouni A., Saenger W. DIP original experiment: DIP-132969X Nature structural & molecular biology 2009 IMEx Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. psbl_theeb Photosystem II reaction center protein L psbL tsr1543 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN 8EB1690C62528BC5 8EB1690C62528BC5 psbf_theeb Cytochrome b559 subunit beta psbF PSII reaction center subunit VI tsr1542 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR C8D3083549A696C0 C8D3083549A696C0 psby_theeb Photosystem II protein Y psbY tsl0836 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MDWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLLQKAKAA B17D3247F887DF86 ycf12_theeb Photosystem II reaction center protein Ycf12 ycf12 tsr1242 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL 19DF1C3506E4C032 psbm_theeb Photosystem II reaction center protein M psbM tsl2052 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS C7CE190547B00AD4 C7CE190547B00AD4 psbj_theeb Photosystem II reaction center protein J psbJ tsr1544 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL 4D05FAA8C690069E 4D05FAA8C690069E psbi_theeb Photosystem II reaction center protein I psbI PSII 4.4 kDa protein tsr1074 protein protein theeb Thermosynechococcus elongatus (strain BP-1) METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE 02DDC30594997948 02DDC30594997948 psbx_theeb Photosystem II reaction center X protein psbX tsr2013 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL 1DDD01F2CC391048 1DDD01F2CC391048 psbt_theeb Photosystem II reaction center protein T psbT tsr1531 protein protein theeb Thermosynechococcus elongatus (strain BP-1) METITYVFIFACIIALFFFAIFFREPPRITKK D8557803A0A3C7E4 D8557803A0A3C7E4 psbh_theeb Photosystem II reaction center protein H psbH tsl1386 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG A7558EDCD943741D A7558EDCD943741D psbo_theeb Photosystem II manganese-stabilizing polypeptide psbO tll0444 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA 1F053A3453990141 1F053A3453990141 psbe_theeb Cytochrome b559 subunit alpha psbE PSII reaction center subunit V tsr1541 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK 19C7A074624D937F 19C7A074624D937F psbz_theeb Photosystem II reaction center protein Z psbZ tsr1967 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV 313A629F73715DD8 313A629F73715DD8 psbb_theeb Photosystem II CP47 reaction center protein psbB PSII 47 kDa protein Protein CP-47 tlr1530 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRRKEAV 0AEEE3DB7124FB81 0AEEE3DB7124FB81 psbk_theeb Photosystem II reaction center protein K psbK tsl0176 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR 45C5197F4B50E398 45C5197F4B50E398 cy550_theeb Cytochrome c-550 psbV Cytochrome c-549 Cytochrome c550 Low-potential cytochrome c tll1285 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY DA634C5C4084F676 DA634C5C4084F676 psbd_theeb Photosystem II D2 protein psbD1 psbD2 Photosystem II Q(A) protein tlr0455 tlr1630 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL C5D91543CD148FD4 C5D91543CD148FD4 psbu_theeb Photosystem II 12 kDa extrinsic protein psbU PS II complex 12 kDa extrinsic protein PSII-U tll2409 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK C75346D2DA75447F C75346D2DA75447F psbc_theeb Photosystem II CP43 reaction center protein PSII 43 kDa protein psbC Protein CP-43 tlr1631 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD 6A07B683DCB519B7 6A07B683DCB519B7 psba1_theeb Photosystem II protein D1 1 psbA1 psbA-1 tlr1843 Photosystem II Q(B) protein 1 protein protein theeb Thermosynechococcus elongatus (strain BP-1) MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLASAESAPVAMIAPSING D4B45833FA46A4D4 D4B45833FA46A4D4 psab-psac-2 2 5 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 6 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 15 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 10 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 18 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 20 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 11 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 13 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 7 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 3 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 17 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 8 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 9 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 12 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 4 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 14 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 19 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 21 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 16 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 22 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus physical association physical association psab-psac-3 1 5 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 6 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 15 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 10 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 18 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 20 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 11 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 13 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 7 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 3 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 17 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 8 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 9 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 12 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 4 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 14 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 19 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 21 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 16 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus 22 unspecified role unspecified role unspecified role unspecified role thermosynechococcus elongatus thermosynechococcus elongatus physical association physical association