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  <entry>
    <source releaseDate="2022-02-04">
      <names>
        <shortLabel>MINT</shortLabel>
        <fullName>MINT, Dpt of Biology, University of Rome Tor Vergata</fullName>
        <alias type="synonym" typeAc="MI:1041">MINT</alias>
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        <attribute name="definition">The Molecular INTeraction database (MINT) is a relational database designed to store interactions between biological molecules.</attribute>
        <attribute name="url" nameAc="MI:0614">http://mint.bio.uniroma2.it</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Glutamate 270 plays an essential role in K(+)-activation and domain closure of Thermus thermophilus isopropylmalate dehydrogenase.</fullName>
        </names>
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          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Glutamate 270 plays an essential role in K(+)-activation and domain closure of Thermus thermophilus isopropylmalate dehydrogenase.</attribute>
            <attribute name="journal" nameAc="MI:0885">FEBS Lett. (0014-5793)</attribute>
            <attribute name="publication year" nameAc="MI:0886">2015</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Gráczer É., Palló A., Oláh J., Szimler T., Konarev P.V., Svergun D.I., Merli A., Závodszky P., Weiss M.S., Vas M.</attribute>
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            <attribute name="imex curation" nameAc="MI:0959"/>
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        <hostOrganismList>
          <hostOrganism ncbiTaxId="-1">
            <names>
              <shortLabel>in vitro</shortLabel>
              <fullName>In vitro</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>x-ray diffraction</shortLabel>
            <fullName>x-ray crystallography</fullName>
            <alias type="go synonym" typeAc="MI:0303">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">x-ray diffraction</alias>
          </names>
          <xref>
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        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
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            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
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        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Gráczer É., Palló A., Oláh J., Szimler T., Konarev P.V., Svergun D.I., Merli A., Závodszky P., Weiss M.S., Vas M.</attribute>
          <attribute name="contact-email" nameAc="MI:0634">vas.maria@ttk.mta.hu</attribute>
          <attribute name="accepted">Accepted 2015-FEB-23 by LUANA</attribute>
          <attribute name="journal" nameAc="MI:0885">FEBS Lett. (0014-5793)</attribute>
          <attribute name="publication year" nameAc="MI:0886">2015</attribute>
          <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
          <attribute name="imex curation" nameAc="MI:0959"/>
          <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>leu3_thet8</shortLabel>
          <fullName>3-isopropylmalate dehydrogenase</fullName>
          <alias type="gene name" typeAc="MI:0301">leuB</alias>
          <alias type="gene name synonym" typeAc="MI:0302">3-IPM-DH</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Beta-IPM dehydrogenase</alias>
          <alias type="locus name" typeAc="MI:0305">TTHA1230</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q5SIY4" version="SP_84" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="BAD71053" version="SP_122" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-9699580" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4WUO"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="WP_011228534.1"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019818"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR024084"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004429"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="YP_144496.1"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1DPZ"/>
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          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1GC8"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1GC9"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1HEX"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1IDM"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1IPD"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1OSI"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1OSJ"/>
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          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1XAD"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2Y3Z"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2Y40"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2Y41"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2Y42"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2ZTW"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4F7I"/>
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          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" version="SP_122"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0051287" version="SP_122"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
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            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="300852">
          <names>
            <shortLabel>thet8</shortLabel>
            <fullName>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</fullName>
          </names>
        </organism>
        <sequence>MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLA</sequence>
        <attributeList>
          <attribute name="crc64">3EFF8736312E2785</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-23837-1">
        <names>
          <shortLabel>leub-1</shortLabel>
        </names>
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          <primaryRef db="intact" dbAc="MI:0469" id="EBI-10634226" refType="identity" refTypeAc="MI:0356"/>
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          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4wuo"/>
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        <experimentList>
          <experimentRef>1</experimentRef>
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        <participantList>
          <participant id="4">
            <interactorRef>2</interactorRef>
            <participantIdentificationMethodList>
              <participantIdentificationMethod>
                <names>
                  <shortLabel>predetermined</shortLabel>
                  <fullName>predetermined participant</fullName>
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            </participantIdentificationMethodList>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
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              <xref>
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            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>neutral component</shortLabel>
                  <fullName>neutral component</fullName>
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                <xref>
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            </experimentalRoleList>
            <experimentalPreparationList>
              <experimentalPreparation>
                <names>
                  <shortLabel>purified</shortLabel>
                  <fullName>purified</fullName>
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                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0350" refType="identity" refTypeAc="MI:0356"/>
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              </experimentalPreparation>
            </experimentalPreparationList>
            <featureList>
              <feature id="5">
                <names>
                  <shortLabel>Q5SIY4:p.Glu270Ala</shortLabel>
                </names>
                <xref>
                  <primaryRef db="intact" dbAc="MI:0469" id="EBI-10634233" refType="identity" refTypeAc="MI:0356"/>
                </xref>
                <featureType>
                  <names>
                    <shortLabel>mutation</shortLabel>
                    <fullName>mutation</fullName>
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                  <xref>
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                </featureType>
                <featureRangeList>
                  <featureRange>
                    <startStatus>
                      <names>
                        <shortLabel>certain</shortLabel>
                        <fullName>certain sequence position</fullName>
                        <alias type="synonym" typeAc="MI:1041">certain</alias>
                      </names>
                      <xref>
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                    </startStatus>
                    <begin position="270"/>
                    <endStatus>
                      <names>
                        <shortLabel>certain</shortLabel>
                        <fullName>certain sequence position</fullName>
                        <alias type="synonym" typeAc="MI:1041">certain</alias>
                      </names>
                      <xref>
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                    </endStatus>
                    <end position="270"/>
                    <resultingSequence>
                      <originalSequence>E</originalSequence>
                      <newSequence>A</newSequence>
                    </resultingSequence>
                  </featureRange>
                </featureRangeList>
                <attributeList>
                  <attribute name="remark-internal">Wed May 02 14:53:21 BST 2018 This feature has been corrected as a result of our quality control procedures. The original label was 'glu270ala'</attribute>
                  <attribute name="remark-internal">Tue Jun 30 19:18:23 BST 2020 This feature has been corrected as a result of our quality control procedures. The original label was 'p.Glu270Ala'</attribute>
                </attributeList>
              </feature>
            </featureList>
            <stoichiometry value="2"/>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
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            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
        <attributeList>
          <attribute name="figure legend" nameAc="MI:0599">t1 f1</attribute>
          <attribute name="comment" nameAc="MI:0612">The global structure of E270A mutant IPMDH with bound Mn2+, IPM and NADH exhibits a closed conformation, but slightly less closed than that of the previously determined [7] wild-type enzyme. However, the active sites exhibit well defined differences due to the mutation. Fig. 1 illustrates part of the active site of Tt-IPMDH with bound IPM and NADH both of the wild-type (A) and the E270A mutant (B) enzymes. In the wild-type enzyme the carboxylate group of E270 is an important electrostatic ligand for K+-ion. In the active site of the wild-type IPMDH there was a peak observed on the Fo Fc difference density map when the K+-ion was initially modelled as water, however in case of the E270A mutant enzyme there was no residual density when this peak was modelled as water.</attribute>
        </attributeList>
      </interaction>
    </interactionList>
  </entry>
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