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  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>MINT</shortLabel>
        <fullName>MINT, Dpt of Biology, University of Rome Tor Vergata</fullName>
        <alias type="synonym" typeAc="MI:1041">MINT</alias>
      </names>
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      </xref>
      <attributeList>
        <attribute name="url" nameAc="MI:0614">http://mint.bio.uniroma2.it/mint</attribute>
        <attribute name="url" nameAc="MI:0614">url&amp;gt;http://mint.bio.uniroma2.it/mint/</attribute>
        <attribute name="url" nameAc="MI:0614">https://mint.bio.uniroma2.it</attribute>
        <attribute name="id-validation-regexp" nameAc="MI:0628">MINT-[0-9]+</attribute>
        <attribute name="search-url" nameAc="MI:0615">https://mint.bio.uniroma2.it/index.php/results-interactions/?id=${ac}</attribute>
        <attribute name="definition">The Molecular INTeraction database (MINT) is a relational database designed to store interactions between biological molecules.</attribute>
        <attribute name="url" nameAc="MI:0614">http://mint.bio.uniroma2.it</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Conformation-specific crosslinking of mitochondrial complex I.</fullName>
        </names>
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          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="23454639" refType="primary-reference" refTypeAc="MI:0358"/>
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            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-8451346" refType="identity" refTypeAc="MI:0356"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Conformation-specific crosslinking of mitochondrial complex I.</attribute>
            <attribute name="journal" nameAc="MI:0885">FEBS Lett. (0014-5793)</attribute>
            <attribute name="publication year" nameAc="MI:0886">2013</attribute>
            <attribute name="author-list" nameAc="MI:0636">Ciano M., Fuszard M., Heide H., Botting CH., Galkin A.</attribute>
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        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="-1">
            <names>
              <shortLabel>in vitro</shortLabel>
              <fullName>In vitro</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>crosslink</shortLabel>
            <fullName>cross-linking study</fullName>
            <alias type="synonym" typeAc="MI:1041">crosslink</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0030" refType="identity" refTypeAc="MI:0356"/>
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        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>ms participant</shortLabel>
            <fullName>Identification by mass spectrometry</fullName>
            <alias type="synonym" typeAc="MI:1041">ms participant</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0427" refType="identity" refTypeAc="MI:0356"/>
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        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Ciano M., Fuszard M., Heide H., Botting CH., Galkin A.</attribute>
          <attribute name="journal" nameAc="MI:0885">FEBS Lett. (0014-5793)</attribute>
          <attribute name="publication year" nameAc="MI:0886">2013</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>ndua9_bovin</shortLabel>
          <fullName>NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial</fullName>
          <alias type="gene name" typeAc="MI:0301">NDUFA9</alias>
          <alias type="gene name synonym" typeAc="MI:0302">NADH-ubiquinone oxidoreductase 39 kDa subunit</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Complex I-39kD</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="P34943" version="SP_49" refType="identity" refTypeAc="MI:0356"/>
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          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1219707" refType="identity" refTypeAc="MI:0356"/>
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          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSBTAT00000007189" version="SP_140" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0003954" version="SP_140"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005654" version="SP_140"/>
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          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005759" version="SP_140"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0007623" version="SP_140"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0032981" version="SP_140"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0044877" version="SP_140"/>
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        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
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        </interactorType>
        <organism ncbiTaxId="9913">
          <names>
            <shortLabel>bovin</shortLabel>
            <fullName>Bos taurus (Bovine)</fullName>
            <alias type="synonym" typeAc="MI:1041">Bovine</alias>
          </names>
        </organism>
        <sequence>MAAAVHPRVVRVLPMSRSSVPALAASVFHSPPQRQLHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRETFPEATIIKPAEIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIKDPDARGKTFAFVGPSRYLLFDLVQYVFAVAHRPFLPYPLPHFAYRWIGRLFEISPFEPWTTRDKVERIHTTDKILPHLPGLEDLGVEATPLELKAIEVLRRHRTYRWLSSEIEDVQPAKTIPTSGP</sequence>
        <attributeList>
          <attribute name="crc64">B453FA19D48D03CD</attribute>
        </attributeList>
      </interactor>
      <interactor id="3">
        <names>
          <shortLabel>nu3m_bovin</shortLabel>
          <fullName>NADH-ubiquinone oxidoreductase chain 3</fullName>
          <alias type="gene name" typeAc="MI:0301">MT-ND3</alias>
          <alias type="gene name synonym" typeAc="MI:0302">MTND3</alias>
          <alias type="gene name synonym" typeAc="MI:0302">NADH3</alias>
          <alias type="gene name synonym" typeAc="MI:0302">ND3</alias>
          <alias type="gene name synonym" typeAc="MI:0302">NADH dehydrogenase subunit 3</alias>
        </names>
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          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="Q8SEI7" version="SP_38" refType="secondary-ac" refTypeAc="MI:0360"/>
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        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
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        </interactorType>
        <organism ncbiTaxId="9913">
          <names>
            <shortLabel>bovin</shortLabel>
            <fullName>Bos taurus (Bovine)</fullName>
            <alias type="synonym" typeAc="MI:1041">Bovine</alias>
          </names>
        </organism>
        <sequence>MNLMLALLTNFTLATLLVIIAFWLPQLNVYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTANLNTMLTMALFLIILLAVSLAYEWTQKGLEWTE</sequence>
        <attributeList>
          <attribute name="crc64">A55C1B856B1C3515</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="4">
        <names>
          <shortLabel>mt_nd3-ndufa9</shortLabel>
        </names>
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          <primaryRef db="mint" dbAc="MI:0471" id="MINT-8414256" refType="identity" refTypeAc="MI:0356"/>
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        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
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            <names>
              <alias type="author assigned name" typeAc="MI:0345">NDUFA9</alias>
            </names>
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              <primaryRef db="mint" dbAc="MI:0471" id="MINT-8414258" refType="identity" refTypeAc="MI:0356"/>
            </xref>
            <interactorRef>2</interactorRef>
            <participantIdentificationMethodList>
              <participantIdentificationMethod>
                <names>
                  <shortLabel>ms participant</shortLabel>
                  <fullName>Identification by mass spectrometry</fullName>
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                <xref>
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              </participantIdentificationMethod>
              <participantIdentificationMethod>
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                  <fullName>experimental participant identification</fullName>
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              </participantIdentificationMethod>
            </participantIdentificationMethodList>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
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                <names>
                  <shortLabel>neutral component</shortLabel>
                  <fullName>neutral component</fullName>
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            </experimentalRoleList>
            <experimentalPreparationList>
              <experimentalPreparation>
                <names>
                  <shortLabel>subcellular prep</shortLabel>
                  <fullName>subcellular preparation</fullName>
                  <alias type="synonym" typeAc="MI:1041">subcellular prep</alias>
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              </experimentalPreparation>
              <experimentalPreparation>
                <names>
                  <shortLabel>physiological level</shortLabel>
                  <fullName>physiological level</fullName>
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                  <alias type="go synonym" typeAc="MI:0303">endogenous</alias>
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          </participant>
          <participant id="6">
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              <alias type="author assigned name" typeAc="MI:0345">ND3</alias>
            </names>
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              </participantIdentificationMethod>
              <participantIdentificationMethod>
                <names>
                  <shortLabel>experimental particp</shortLabel>
                  <fullName>experimental participant identification</fullName>
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              </participantIdentificationMethod>
            </participantIdentificationMethodList>
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              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
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                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <experimentalPreparationList>
              <experimentalPreparation>
                <names>
                  <shortLabel>subcellular prep</shortLabel>
                  <fullName>subcellular preparation</fullName>
                  <alias type="synonym" typeAc="MI:1041">subcellular prep</alias>
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              </experimentalPreparation>
              <experimentalPreparation>
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                  <shortLabel>physiological level</shortLabel>
                  <fullName>physiological level</fullName>
                  <alias type="go synonym" typeAc="MI:0303">endogenous level</alias>
                  <alias type="go synonym" typeAc="MI:0303">endogenous</alias>
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                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0222" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1537793" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalPreparation>
            </experimentalPreparationList>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>physical association</shortLabel>
            <fullName>physical association</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0915" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1813147" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
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        <attributeList>
          <attribute name="comment" nameAc="MI:0612">mint</attribute>
          <attribute name="source-text">Then, we went on to identify the proteins that had been cleaved from the crosslinked product  formed specifically in the D-form of the enzyme, by mass spectrometry. Spot 1 was positively identified  as subunit ND3 (NU3M) and spot 2 as 39 kDa subunit (NDUFA9) (Table 1). The MS/MS spectrum of  the peptide from the ND3 subunit, TSPYECGFDPMGSAR, is shown in Fig. 3</attribute>
          <attribute name="figure legend" nameAc="MI:0599">f2 t1 f3</attribute>
        </attributeList>
      </interaction>
    </interactionList>
  </entry>
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