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  <entry>
    <source releaseDate="2022-02-04">
      <names>
        <shortLabel>IntAct</shortLabel>
        <fullName>European Bioinformatics Institute</fullName>
        <alias type="synonym" typeAc="MI:1041">IntAct</alias>
        <alias type="synonym" typeAc="MI:1041">intact</alias>
      </names>
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        <xref>
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        </xref>
      </bibref>
      <xref>
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        <secondaryRef db="pubmed" dbAc="MI:0446" id="19850723" refType="method reference" refTypeAc="MI:0357"/>
      </xref>
      <attributeList>
        <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/</attribute>
        <attribute name="search-url" nameAc="MI:0615">http://www.ebi.ac.uk/intact/query/${ac}</attribute>
        <attribute name="id-validation-regexp" nameAc="MI:0628">EBI-[0-9]+|IA:[0-9]+</attribute>
        <attribute name="definition">INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions.</attribute>
        <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/intact</attribute>
        <attribute name="postaladdress">European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom</attribute>
        <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/intact/</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Cryo-EM structure of the SARS-CoV-2 3a ion channel in lipid nanodiscs.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="32587976" refType="primary-reference" refTypeAc="MI:0358"/>
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            <secondaryRef db="doi" dbAc="MI:0574" id="10.1101/2020.06.17.156554" refType="see-also" refTypeAc="MI:0361"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-28289" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Cryo-EM structure of the SARS-CoV-2 3a ion channel in lipid nanodiscs.</attribute>
            <attribute name="journal" nameAc="MI:0885">bioRxiv : the preprint server for biology</attribute>
            <attribute name="publication year" nameAc="MI:0886">2020</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Kern DM., Sorum B., Hoel CM., Sridharan S., Remis JP., Toso DB., Brohawn SG.</attribute>
            <attribute name="dataset" nameAc="MI:0875">Virus - Publications including interactions involving viral proteins</attribute>
            <attribute name="dataset" nameAc="MI:0875">Coronavirus - Interactions investigated in the context of Coronavirus</attribute>
            <attribute name="remark-internal">I have not added Mol. Seiving as they state there is a Dimer at ~62kDa - however in Figs S3 and S13 the "dimer" is running at ~30/35 kDa which is the approx.  M. wt. of the monomer. I see no bands in either figure of 62 kDa nor tetramer ~120kDa. (monomer Wt is stated to be 31kDa and by calculation is ~33kDa)</attribute>
            <attribute name="contact-email" nameAc="MI:0634">brohawn@berkeley.edu</attribute>
            <attribute name="author-announcement">28-Sep-2020: Contacted by IntAct-Help.</attribute>
            <attribute name="curation request" nameAc="MI:0873">by Birgit</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959">imex curation</attribute>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="imex" dbAc="MI:0670" id="IM-28289" refType="imex-primary" refTypeAc="MI:0662"/>
          <secondaryRef db="pubmed" dbAc="MI:0446" id="32587976" refType="primary-reference" refTypeAc="MI:0358"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="7108">
            <names>
              <shortLabel>spofr-sf_9</shortLabel>
              <fullName>Spodoptera frugiperda insect cells</fullName>
              <alias type="synonym" typeAc="MI:1041">Fall armyworm</alias>
            </names>
            <cellType>
              <names>
                <shortLabel>sf_9</shortLabel>
                <fullName>insect cells</fullName>
              </names>
              <xref>
                <primaryRef db="cabri" dbAc="MI:0246" id="ACC 125" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="IA:0078" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="mint" dbAc="MI:0471" id="MINT-86941" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-346407" refType="identity" refTypeAc="MI:0356"/>
              </xref>
              <attributeList>
                <attribute name="comment" nameAc="MI:0612">Derived from pupal ovarian tissue of the fall armyworm</attribute>
                <attribute name="comment" nameAc="MI:0612">Cloned from the parent cell line, IPLB-SF-21-AE (SF-21)</attribute>
                <attribute name="comment" nameAc="MI:0612">derived from immature ovaries of fall armyworm Spodoptera frugiperda pupae</attribute>
                <attribute name="comment" nameAc="MI:0612">cells are susceptible to Baculovirus infection</attribute>
              </attributeList>
            </cellType>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>3d-em</shortLabel>
            <fullName>3D electron microscopy</fullName>
            <alias type="synonym" typeAc="MI:1041">3D-EM</alias>
            <alias type="synonym" typeAc="MI:1041">electron tomog</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0410" refType="identity" refTypeAc="MI:0356"/>
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        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>structure determination</shortLabel>
            <fullName>identification by structure determination</fullName>
            <alias type="synonym" typeAc="MI:1041">identification by structure determination</alias>
            <alias type="synonym" typeAc="MI:1041">structure determination</alias>
          </names>
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            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:2287" refType="identity" refTypeAc="MI:0356"/>
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        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Kern DM., Sorum B., Hoel CM., Sridharan S., Remis JP., Toso DB., Brohawn SG.</attribute>
          <attribute name="dataset" nameAc="MI:0875">Virus - Publications including interactions involving viral proteins</attribute>
          <attribute name="remark-internal">I have not added Mol. Seiving as they state there is a Dimer at ~62kDa - however in Figs S3 and S13 the "dimer" is running at ~30/35 kDa which is the approx.  M. wt. of the monomer. I see no bands in either figure of 62 kDa nor tetramer ~120kDa. (monomer Wt is stated to be 31kDa and by calculation is ~33kDa)</attribute>
          <attribute name="contact-email" nameAc="MI:0634">brohawn@berkeley.edu</attribute>
          <attribute name="accepted">Accepted 2020-AUG-25 AT 12:58 BST AT 12:58 BST by KALPANAP</attribute>
          <attribute name="curation request" nameAc="MI:0873">by Birgit</attribute>
          <attribute name="journal" nameAc="MI:0885">bioRxiv : the preprint server for biology</attribute>
          <attribute name="publication year" nameAc="MI:0886">2020</attribute>
          <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>ap3a_sars2</shortLabel>
          <fullName>ORF3a protein</fullName>
          <alias type="gene name synonym" typeAc="MI:0302">Accessory protein 3a</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Protein U274</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Protein X1</alias>
          <alias type="orf name" typeAc="MI:0306">3a</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Protein 3a</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="P0DTC3" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-25475894" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005216" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005576" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005788" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0016021" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0020002" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0033116" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0039707" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0044174" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0044187" version="SP_9"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0055036" version="SP_9"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR024407"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="7KJR"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="YP_009724391.1"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6XDC"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-9694322"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-9694614"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-9694635"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-9694719"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
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            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="2697049">
          <names>
            <shortLabel>SARS-CoV-2</shortLabel>
            <fullName>SARS-CoV-2</fullName>
            <alias type="synonym" typeAc="MI:1041">SARS-CoV-2</alias>
            <alias type="synonym" typeAc="MI:1041">Severe acute respiratory syndrome coronavirus 2</alias>
            <alias type="synonym" typeAc="MI:1041">2019-nCoV</alias>
          </names>
        </organism>
        <sequence>MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL</sequence>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-28289-1">
        <names>
          <shortLabel>ap3a_sars2-1</shortLabel>
        </names>
        <xref>
          <primaryRef db="wwpdb" dbAc="MI:0805" id="6XDC" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="emdb" dbAc="MI:0936" id="EMD-22136" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-25816826" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-28289-1" refType="imex-primary" refTypeAc="MI:0662"/>
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          <secondaryRef db="emdb" dbAc="MI:0936" id="EMD-22138" refType="see-also" refTypeAc="MI:0361"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="4">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>neutral component</shortLabel>
                  <fullName>neutral component</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0497" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-55" refType="identity" refTypeAc="MI:0356"/>
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              </experimentalRole>
            </experimentalRoleList>
            <experimentalPreparationList>
              <experimentalPreparation>
                <names>
                  <shortLabel>purified</shortLabel>
                  <fullName>purified</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0350" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1537811" refType="identity" refTypeAc="MI:0356"/>
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              </experimentalPreparation>
            </experimentalPreparationList>
            <featureList>
              <feature id="5">
                <names>
                  <shortLabel>post-cleavage</shortLabel>
                </names>
                <xref>
                  <primaryRef db="intact" dbAc="MI:0469" id="EBI-25816833" refType="identity" refTypeAc="MI:0356"/>
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                <featureType>
                  <names>
                    <shortLabel>tag</shortLabel>
                    <fullName>tag</fullName>
                  </names>
                  <xref>
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                </featureType>
                <featureRangeList>
                  <featureRange>
                    <startStatus>
                      <names>
                        <shortLabel>c-term range</shortLabel>
                        <fullName>C-terminal range</fullName>
                        <alias type="synonym" typeAc="MI:1041">c-term range</alias>
                      </names>
                      <xref>
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                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-2929799" refType="identity" refTypeAc="MI:0356"/>
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                      <names>
                        <shortLabel>c-term range</shortLabel>
                        <fullName>C-terminal range</fullName>
                        <alias type="synonym" typeAc="MI:1041">c-term range</alias>
                      </names>
                      <xref>
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                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14760721" refType="primary-reference" refTypeAc="MI:0358"/>
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                    </endStatus>
                  </featureRange>
                </featureRangeList>
              </feature>
            </featureList>
            <stoichiometry value="2"/>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
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            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
        <attributeList>
          <attribute name="figure legend" nameAc="MI:0599">Table S1</attribute>
        </attributeList>
      </interaction>
    </interactionList>
  </entry>
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