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  <entry>
    <source releaseDate="2022-02-04">
      <names>
        <shortLabel>IntAct</shortLabel>
        <fullName>European Bioinformatics Institute</fullName>
        <alias type="synonym" typeAc="MI:1041">IntAct</alias>
        <alias type="synonym" typeAc="MI:1041">intact</alias>
      </names>
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      <attributeList>
        <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/</attribute>
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        <attribute name="id-validation-regexp" nameAc="MI:0628">EBI-[0-9]+|IA:[0-9]+</attribute>
        <attribute name="definition">INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions.</attribute>
        <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/intact</attribute>
        <attribute name="postaladdress">European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom</attribute>
        <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/intact/</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Structural basis for the inhibition of SARS-CoV-2 main protease by antineoplastic drug carmofur.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="32382072" refType="primary-reference" refTypeAc="MI:0358"/>
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          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Structural basis for the inhibition of SARS-CoV-2 main protease by antineoplastic drug carmofur.</attribute>
            <attribute name="journal" nameAc="MI:0885">Nature structural &amp; molecular biology</attribute>
            <attribute name="publication year" nameAc="MI:0886">2020</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Jin Z., Zhao Y., Sun Y., Zhang B., Wang H., Wu Y., Zhu Y., Zhu C., Hu T., Du X., Duan Y., Yu J., Yang X., Yang X., Yang K., Liu X., Guddat LW., Xiao G., Zhang L., Yang H., Rao Z.</attribute>
            <attribute name="dataset" nameAc="MI:0875">Virus - Publications including interactions involving viral proteins</attribute>
            <attribute name="dataset" nameAc="MI:0875">Coronavirus - Interactions investigated in the context of Coronavirus</attribute>
            <attribute name="contact-email" nameAc="MI:0634">zhangleike@wh.iov.cn,yanght@shanghaitech.edu.cn</attribute>
            <attribute name="author-announcement">28-Sep-2020: Contacted by IntAct-Help.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959">imex curation</attribute>
          </attributeList>
        </bibref>
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        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="83333">
            <names>
              <shortLabel>ecoli</shortLabel>
              <fullName>Escherichia coli (strain K12)</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>x-ray diffraction</shortLabel>
            <fullName>x-ray crystallography</fullName>
            <alias type="go synonym" typeAc="MI:0303">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">x-ray diffraction</alias>
          </names>
          <xref>
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        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
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            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
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        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Jin Z., Zhao Y., Sun Y., Zhang B., Wang H., Wu Y., Zhu Y., Zhu C., Hu T., Du X., Duan Y., Yu J., Yang X., Yang X., Yang K., Liu X., Guddat LW., Xiao G., Zhang L., Yang H., Rao Z.</attribute>
          <attribute name="dataset" nameAc="MI:0875">Virus - Publications including interactions involving viral proteins</attribute>
          <attribute name="contact-email" nameAc="MI:0634">zhangleike@wh.iov.cn,yanght@shanghaitech.edu.cn</attribute>
          <attribute name="accepted">Accepted 2020-JUL-09 AT 13:32 BST AT 13:32 BST by ORCHARD</attribute>
          <attribute name="journal" nameAc="MI:0885">Nature structural &amp; molecular biology</attribute>
          <attribute name="publication year" nameAc="MI:0886">2020</attribute>
          <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
          <attribute name="imex curation" nameAc="MI:0959">imex curation</attribute>
          <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>p0dtd1-pro_0000449623</shortLabel>
          <fullName>3C-like proteinase nsp5</fullName>
          <alias type="gene name" typeAc="MI:0301">rep</alias>
          <alias type="gene name synonym" typeAc="MI:0302">ORF1ab polyprotein</alias>
          <alias type="orf name" typeAc="MI:0306">1a-1b</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="P0DTD1-PRO_0000449623" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-25475864" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-25492095" refType="chain-parent" refTypeAc="MI:0951"/>
          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="P0DTD1" refType="chain-parent" refTypeAc="MI:0951"/>
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        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
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          <xref>
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            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="2697049">
          <names>
            <shortLabel>SARS-CoV-2</shortLabel>
            <fullName>SARS-CoV-2</fullName>
            <alias type="synonym" typeAc="MI:1041">SARS-CoV-2</alias>
            <alias type="synonym" typeAc="MI:1041">Severe acute respiratory syndrome coronavirus 2</alias>
            <alias type="synonym" typeAc="MI:1041">2019-nCoV</alias>
          </names>
        </organism>
        <sequence>SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ</sequence>
        <attributeList>
          <attribute name="chain-seq-start">3264</attribute>
          <attribute name="chain-seq-end">3569</attribute>
        </attributeList>
      </interactor>
      <interactor id="3">
        <names>
          <shortLabel>hexylcarbamic acid</shortLabel>
          <fullName>hexylcarbamic acid</fullName>
        </names>
        <xref>
          <primaryRef db="chebi" dbAc="MI:0474" id="CHEBI:156060" refType="identity" refTypeAc="MI:0356"/>
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        <interactorType>
          <names>
            <shortLabel>small molecule</shortLabel>
            <fullName>small molecule</fullName>
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        </interactorType>
        <organism ncbiTaxId="-2">
          <names>
            <shortLabel>chemical synthesis</shortLabel>
            <fullName>Chemical synthesis (Chemical synthesis)</fullName>
          </names>
        </organism>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="4" imexId="IM-28161-1">
        <names>
          <shortLabel>rep-103</shortLabel>
        </names>
        <xref>
          <primaryRef db="wwpdb" dbAc="MI:0805" id="7BUY" refType="identity" refTypeAc="MI:0356"/>
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          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="5">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
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            </biologicalRole>
            <experimentalRoleList>
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                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
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            </experimentalRoleList>
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                <names>
                  <shortLabel>purified</shortLabel>
                  <fullName>purified</fullName>
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            <featureList>
              <feature id="6">
                <names>
                  <shortLabel>cys145</shortLabel>
                </names>
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                  <primaryRef db="intact" dbAc="MI:0469" id="EBI-25747975" refType="identity" refTypeAc="MI:0356"/>
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                <featureType>
                  <names>
                    <shortLabel>ester crosslinked residues</shortLabel>
                    <fullName>ester crosslinked residues</fullName>
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                        <shortLabel>certain</shortLabel>
                        <fullName>certain sequence position</fullName>
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                    </startStatus>
                    <begin position="145"/>
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                        <fullName>certain sequence position</fullName>
                        <alias type="synonym" typeAc="MI:1041">certain</alias>
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                    </endStatus>
                    <end position="145"/>
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                </featureRangeList>
              </feature>
            </featureList>
            <stoichiometry value="2"/>
          </participant>
          <participant id="7">
            <interactorRef>3</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
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            </biologicalRole>
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                <names>
                  <shortLabel>neutral component</shortLabel>
                  <fullName>neutral component</fullName>
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            <featureList>
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                <names>
                  <shortLabel>carbamoyl group</shortLabel>
                </names>
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                  <primaryRef db="intact" dbAc="MI:0469" id="EBI-25747992" refType="identity" refTypeAc="MI:0356"/>
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                    <shortLabel>thiolated residue</shortLabel>
                    <fullName>thiolated residue</fullName>
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                        <shortLabel>undetermined</shortLabel>
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                  </featureRange>
                </featureRangeList>
              </feature>
            </featureList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="-2">
                <names>
                  <shortLabel>chemical synthesis</shortLabel>
                  <fullName>Chemical synthesis (Chemical synthesis)</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
            <stoichiometry value="1"/>
          </participant>
        </participantList>
        <inferredInteractionList>
          <inferredInteraction>
            <participant>
              <participantFeatureRef>8</participantFeatureRef>
            </participant>
            <participant>
              <participantFeatureRef>6</participantFeatureRef>
            </participant>
          </inferredInteraction>
        </inferredInteractionList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
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            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
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        </interactionType>
        <attributeList>
          <attribute name="figure legend" nameAc="MI:0599">Supplementary table</attribute>
          <attribute name="comment" nameAc="MI:0612">The fatty acid moiety (C7H14NO) of carmofur is linked to the Sgamma atom of Cys145 through a 1.8 A covalent bond -the sulfhydryl group of Cys145 attacks the electrophilic carbonyl group of carmofur, resulting in covalent modification of Cys145 and release of 5-FU.</attribute>
        </attributeList>
      </interaction>
    </interactionList>
  </entry>
</entrySet>