IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell (1040-4651) 2005 imex curation Sarnowski TJ., Rios G., Jasik J., Swiezewski S., Kaczanowski S., Li Y., Kwiatkowska A., Pawlikowska K., Kozbial M., Kozbial P., Koncz C., Jerzmanowski A. Chromatin - Epigenetic interactions resulting in chromatin modulation tsarn@poczta.ibb.waw.pl 22-Jan-2008: Contacted by JYOTI. Only protein-protein interactions yeasx Saccharomyces cerevisiae (Baker's yeast) Baker's yeast 2 hybrid two hybrid 2H 2h Gal4 transcription regeneration two-hybrid yeast two hybrid 2-hybrid classical two hybrid classical two hybrid 2H two-hybrid 2-hybrid Gal4 transcription regeneration 2h yeast two hybrid Y2H Y-2H 2 hybrid predetermined predetermined participant predetermined Sarnowski TJ., Rios G., Jasik J., Swiezewski S., Kaczanowski S., Li Y., Kwiatkowska A., Pawlikowska K., Kozbial M., Kozbial P., Koncz C., Jerzmanowski A. Chromatin - Epigenetic interactions resulting in chromatin modulation tsarn@poczta.ibb.waw.pl Accepted 2007-DEC-14 by JYOTI. Plant Cell (1040-4651) 2005 Only protein-protein interactions imex curation fca_arath Flowering time control protein FCA FCA dl4180c dl4181c FCAALL.331 dl4182c At4g16280 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MNGPPDRVDFKPMGPHHGGSFRPMGFAYDDGFRPMGPNGGVGGEGTRSIVGARYNYPAKYPPSESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRPQTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMSGIGQNAQDYARTHIPVGAASMNDISRTQQSRQSPQELMWKNKA DFD6CB3BF6159248 swi3a_arath SWI/SNF complex subunit SWI3A SWI3A At2g47620 CHB1 Transcription regulatory protein SWI3A T30B22.7 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MEATDPSAEIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQGTPAGIRVTATPNSLRPITAPPLVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKLIGNSAAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSILTEDENTEQVQTDGQEHEETETREEKEDRVNEDEPPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDTDDYSNFTVDRANGEKDTDMEEQQEEKDGPQGLPVALRIRASVATALGAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVSVLQCAFRSGITKRWDHTYVK 03E23ED31BC88AA4 swi3d_arath SWI/SNF complex subunit SWI3D SWI3D CHB3 At4g34430 F10M10.200 T4L20.10 Transcription regulatory protein SWI3D protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLTREKAMLASFSPVHNGPLTRARQAPSIMPSAADGVKSEVLNVAVGADGEKPKEEEERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQVDEACPPLVHKPRFTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDETMKEVPEPEDGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADENIALKALTEAFEDVGHSSTPEASFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGMLLATRHCYILEDPPDNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTVGEKVQLAKEEGANDVLSTPDKSVSQQPIGSASAPENGTAGGNPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRPPMPRPPGFPVPGSFVAATTMTGSSDPSPGSDNVSSV FDF941F23E23337A swi3c_arath SWI/SNF complex subunit SWI3C SWI3C At1g21700 CHB4 Transcription regulatory protein SWI3C F8K7.13 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MPASEDRRGKWKRKKRGGLSAARKPKQEEEDMEEEDEENNNNNNEEMDDVENADELQQNGGATPDPGLGIGEVVEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGETRGQGSLPALENISFGQLQALSTVPADSLDLERSDGSSSAYVISPPPIMDGEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTDSNGDLPGYSEQGSDTEIKLPFVKSPNPVMALVAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGISPQTNNLQGMSLSTGGNNINSLMHQQHQQQQASATSQPSIIPGFSNNPQVQAQMHFMARQQQQQQQQQQQQQQAFSFGPRLPLNAIQTNAGSTASPNVMFGNNQLNNPAAAGAASINQPSFSHPMVRSSTGSGSGSGLGLN DIP protein Q9XI07 original sequence version: 101 DAB17C104E4B287F bsh_arath Chromatin structure-remodeling complex protein BSH BSH At3g17590 MKP6.15 Protein BUSHY SNF5 homolog protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTVKDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGRRGSDHGSASKASGLSMDLMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERHAR C38055D92BC68CAA swi3b_arath SWI/SNF complex subunit SWI3B At2g33610 SWI3B CHB2 Transcription regulatory protein SWI3B F4P9.38 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAMKAPDPGGSGEILPSTPSLSETTSGGAAAASKSAQLPSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEAGKSAGDAASEPATTVKETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVKESDSEDGLEMFDQIKDSDIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAEAAARAAVRALSDVDYEADKNASRDPNRQDANAASSGETTRNESERAWADAKSLIEKEEHEVEGAIKETVEVEMKKIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIFFHTRKARKTEDRIEC BB4D35067B8520E1 bsh-sw13a 1 3 unspecified role unspecified role prey prey 6 unspecified role unspecified role bait bait physical association physical association 2 BSH only by forming a heterodimer with either ATSWI3A or ATSWI3B. bsh-sw13b 1 7 unspecified role unspecified role prey prey 6 unspecified role unspecified role bait bait physical association physical association BSH only by forming a heterodimer with either ATSWI3A or ATSWI3B. This interaction is not presented in Figure 2 sw13a-sw13a 1 3 unspecified role unspecified role prey prey 3 unspecified role unspecified role bait bait physical association physical association 2 we observed that ATSWI3A can also form homodimers sw13c-sw13a 1 3 unspecified role unspecified role bait bait 5 unspecified role unspecified role prey prey physical association physical association 2 we observed that ATSWI3A can also form homodimers as well as heterodimers with ATSWI3C. sw13c-fca 1 2 unspecified role unspecified role prey prey c-terminal required to bind necessary binding region required to bind range range range range 5 unspecified role unspecified role bait bait physical association physical association 2 In addition to binding ATSWI3B, ATSWI3A also showed interaction with BSH/SNF5 and with the C-terminal region of FCA, which also mediates the interaction with ATSWI3B The coordinates of the c-terminal region of FCA which interacts with SW13A is not given. The coordinates given are those from UniProt which encompass the domains included in the c-terminal construct described in the text and reference Sarnowski et al (2002) provided in the text (PMID: 12140326). sw13d-sw13b 1 4 unspecified role unspecified role prey prey 7 unspecified role unspecified role bait bait physical association physical association 2 ATSWI3D recognized only ATSWI3B as a binding partner