DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ nemecek-2013-1 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Nemecek D., Boura E., Wu W., Cheng N., Plevka P., Qiao J., Mindich L., Heymann JB., Hurley JH., Steven AC. DIP original experiment: DIP-254649X Structure (London, England : 1993) 2013 IMEx Subunit folds and maturation pathway of a dsRNA virus capsid. Nemecek D., Boura E., Wu W., Cheng N., Plevka P., Qiao J., Mindich L., Heymann JB., Hurley JH., Steven AC. Only protein-protein interactions imex curation nemecek-2013-2 ecolx Escherichia coli 3d-em 3D electron microscopy 3D-EM electron tomog predetermined predetermined participant predetermined Nemecek D., Boura E., Wu W., Cheng N., Plevka P., Qiao J., Mindich L., Heymann JB., Hurley JH., Steven AC. DIP original experiment: DIP-254650X Structure (London, England : 1993) 2013 IMEx Subunit folds and maturation pathway of a dsRNA virus capsid. Nemecek D., Boura E., Wu W., Cheng N., Plevka P., Qiao J., Mindich L., Heymann JB., Hurley JH., Steven AC. Only protein-protein interactions imex curation nemecek-2013-3 in vitro In vitro x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Nemecek D., Boura E., Wu W., Cheng N., Plevka P., Qiao J., Mindich L., Heymann JB., Hurley JH., Steven AC. DIP original experiment: DIP-254651X Structure (London, England : 1993) 2013 IMEx Subunit folds and maturation pathway of a dsRNA virus capsid. Nemecek D., Boura E., Wu W., Cheng N., Plevka P., Qiao J., Mindich L., Heymann JB., Hurley JH., Steven AC. Only protein-protein interactions imex curation qiao-2008-1 psesh Pseudomonas savastanoi pv. phaseolicola Pseudomonas syringae pv. phaseolicola crosslink cross-linking study crosslink predetermined predetermined participant predetermined Qiao X., Sun Y., Qiao J., Mindich L. DIP original experiment: DIP-113732X Proceedings of the National Academy of Sciences of the United States of America 2008 IMEx The role of host protein YajQ in the temporal control of transcription in bacteriophage Phi6. Qiao X., Sun Y., Qiao J., Mindich L. Only protein-protein interactions imex curation huiskonen-2006-1 bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 3d-em 3D electron microscopy 3D-EM electron tomog predetermined predetermined participant predetermined Huiskonen JT., de Haas F., Bubeck D., Bamford DH., Fuller SD., Butcher SJ. DIP original experiment: DIP-66317X Structure (London, England : 1993) 2006 IMEx Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Huiskonen JT., de Haas F., Bubeck D., Bamford DH., Fuller SD., Butcher SJ. Only protein-protein interactions imex curation huiskonen-2006-2 bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 3d-em 3D electron microscopy 3D-EM electron tomog predetermined predetermined participant predetermined Huiskonen JT., de Haas F., Bubeck D., Bamford DH., Fuller SD., Butcher SJ. DIP original experiment: DIP-66318X Structure (London, England : 1993) 2006 IMEx Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Huiskonen JT., de Haas F., Bubeck D., Bamford DH., Fuller SD., Butcher SJ. Only protein-protein interactions imex curation huiskonen-2006-3 bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 3d-em 3D electron microscopy 3D-EM electron tomog predetermined predetermined participant predetermined Huiskonen JT., de Haas F., Bubeck D., Bamford DH., Fuller SD., Butcher SJ. DIP original experiment: DIP-66319X Structure (London, England : 1993) 2006 IMEx Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Huiskonen JT., de Haas F., Bubeck D., Bamford DH., Fuller SD., Butcher SJ. Only protein-protein interactions imex curation p1_bpph6 Major inner protein P1 P1 protein protein bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 MFNLKVKDLNGSARGLTQAFAIGELKNQLSVGALQLPLQFTRTFSASMTSELLWEVGKGNIDPVMYARLFFQYAQAGGALSVDELVNQFTEYHQSTACNPEIWRKLTAYITGSSNRAIKADAVGKVPPTAILEQLRTLAPSEHELFHHITTDFVCHVLSPLGFILPDAAYVYRVGRTATYPNFYALVDCVRASDLRRMLTALSSVDSKMLQATFKAKGALAPALISQHLANAATTAFERSRGNFDANAVVSSVLTILGRLWSPSTPKELDPSARLRNTNGIDQLRSNLALFIAYQDMVKQRGRAEVIFSDEELSSTIIPWFIEAMSEVSPFKLRPINETTSYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPGISDRMSATLAPIGNTFAVSAFVKNRTAVYEAVSQRGTVNSNGAEMTLGFPSVVERDYALDRDPMVAIAALRTGIVDESLEARASNDLKRSMFNYYAAVMHYAVAHNPEVVVSEHQGVAAEQGSLYLVWNVRTELRIPVGYNAIEGGSIRTPEPLEAIAYNKPIQPSEVLQAKVLDLANHTTSIHIWPWHEASTEFAYEDAYSVTIRNKRYTAEVKEFELLGLGQRRERVRILKPTVAHAIIQMWYSWFVEDDRTLAAARRTSRDDAEKLAIDGRRMQNAVTLLRKIEMIGTTGIGASAVHLAQSRIVDQMAGRGLIDDSSDLHVGINRHRIRIWAGLAVLQMMGLLSRSEAEALTKVLGDSNALGMVVATTDIDPSL capsd_bpph6 Major outer capsid protein P8 Protein P8 protein protein bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 MLLPVVARAAVPAIESAIAATPGLVSRIAAAIGSKVSPSAILAAVKSNPVVAGLTLAQIGSTGYDAYQQLLENHPEVAEMLKDLSFKADEIQPDFIGNLGQYREELELVEDAARFVGGMSNLIRLRQALELDIKYYGLKMQLNDMGYRS y4093_pse14 UPF0234 protein PSPPH_4093 PSPPH_4093 protein protein pse14 pse14 Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) MPSFDVVSELDKHEVTNAVDNAIKELDRRYDLKGKGTFEFKELTVTLTAEADFQLEAMIEILKLALVKRKIDAKCLEIKDAYASGKLMKQEVTLREGIDKELAKKIVAHIKEAKLKVQAAIQGEQVRVTGKKRDDLQEAIAALRAYDSGMPLQFNNFRD 54892EFCEAB544A2 p1-2 3256103 N/A 3256106 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false p1-3 3256104 N/A 3256106 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false p1-4 3256105 N/A 3256106 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false p1-yajq-1 3178118 N/A 3178119 unspecified role unspecified role unspecified role unspecified role His-tag His-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false psesh Pseudomonas savastanoi pv. phaseolicola Pseudomonas syringae pv. phaseolicola N/A 3256106 unspecified role unspecified role unspecified role unspecified role psesh Pseudomonas savastanoi pv. phaseolicola Pseudomonas syringae pv. phaseolicola direct interaction direct interaction false false false p1-1 3144737 N/A 3256106 unspecified role unspecified role unspecified role unspecified role spirosoma linguale Spirosoma linguale direct interaction direct interaction false false false p8-1 3144738 N/A 3144741 unspecified role unspecified role unspecified role unspecified role bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 direct interaction direct interaction false false false p1-p8-1 3144739 N/A 3256106 unspecified role unspecified role unspecified role unspecified role bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 N/A 3144741 unspecified role unspecified role unspecified role unspecified role bpph6 Pseudomonas phage phi6 Bacteriophage phi-6 direct interaction direct interaction false false false