DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ ahmed-2013-1 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259751X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-2 in vitro In vitro light scattering light scattering predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259754X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-3 ecolx Escherichia coli light scattering light scattering predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259752X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-4 in vitro In vitro pull down pull down predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259757X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-5 ecolx Escherichia coli x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259755X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-6 in vitro In vitro molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259753X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-7 in vitro In vitro pull down pull down predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259758X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation ahmed-2013-8 in vitro In vitro x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. DIP original experiment: DIP-259756X PLoS biology 2013 IMEx The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB. Ahmed YL., Gerke J., Park HS., Bayram Ö., Neumann P., Ni M., Dickmanns A., Kim SC., Yu JH., Braus GH., Ficner R. Only protein-protein interactions imex curation vosa_emeni Spore development regulator vosA vosA Viability of spores protein A ANIA_01959 protein protein emeni Emericella nidulans Aspergillus nidulans MSAANYPDPSLPRPSTSDDFELIVRQNPNRARVAGGKEKERKPVDPPPIVQIRVREEGTYLAQHYLQSPYFFMSCSLYDAQEDAPASIPPSTALTGTLVSSLHRLKDVDNTDGGFFVWGDLSIKVEGDFRLKFSLFEMRKTDVVFLKSIVSERFTVSPPKSFPGMAESTFLSRSFADQGVKLRIRKEPRTLIKRTAPRPEEYPQAAIPRSPSDRTAMQIPGSSYPAPPYQPTSRDYSYYAPVKRQRTSVDYGARGMYDADGRMRQMETYPQTATLYGQPGGYPTPMMGYPSGHGGVPDYAMSYGLPPSAQVPQMQDPAAQSRSSQQATMQSLGMVNPPGTPTPDSARAMMQQAYPRPQYSASTAVLPPLQQSRNYPQGTNGATRGYYEQSPQATPILPSQPLGTSEAERYGVPPGHTGYDHTGSANGTPR 7EF43AD3427B9202 velb_emeni Velvet complex subunit B velB ANIA_00363 protein protein emeni Emericella nidulans Aspergillus nidulans MYAVEDRAHSGHHPPPLSMDRIPPPSTMYPSSAGPSAMVSPAGQPEPESLSTVHDGRIWSLQVVQQPIRARMCGFGDKDRRPITPPPCIRLIVKDAQTQKEVDINSLDSSFYVVMADLWNADGTHEVNLVKHSATSPSISTAMSSSYPPPPHPTSSDYPASYQTNPYGQPVGQPVGQPVGYAGVGNYYGGSTQLQYQNAYPNPQAQYYQPMYGGMAQPQMPAAQPVTPGPGGMFTRNLIGCLSASAYRLYDTEDKIGVWFVLQDLSVRTEGIFRLKFSFVNVGKSVSDLPQSDIAEVINKGTAPILASTFSEPFQVFSAKKFPGVIESTPLSKVFANQGIKIPIRKDGVKGQGSRGRHSDEDDGLDNEY This sequence has been withdrawn from Uniprot. 46D2F22E50F30ACB vosa-1 3261801 N/A 3261809 unspecified role unspecified role unspecified role unspecified role Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false velb-vosa-1 3261802 N/A 3261810 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3261809 unspecified role unspecified role unspecified role unspecified role Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false vosa-2 3261803 N/A 3261809 unspecified role unspecified role unspecified role unspecified role Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false vosa-velb-1 3261804 N/A 3261810 unspecified role unspecified role prey prey his-tag his-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false ecolx Escherichia coli N/A 3261809 unspecified role unspecified role bait bait Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false Strep-tag Strep-tag strep tag strep tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false ecolx Escherichia coli physical association physical association false false false vosa-3 3261805 N/A 3261809 unspecified role unspecified role unspecified role unspecified role Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false velb-vosa-2 3261806 N/A 3261810 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3261809 unspecified role unspecified role unspecified role unspecified role Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false velb-vosa-3 3261807 N/A 3261810 unspecified role unspecified role bait bait his-tag his-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false ecolx Escherichia coli N/A 3261809 unspecified role unspecified role prey prey Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false Strep-tag Strep-tag strep tag strep tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false ecolx Escherichia coli physical association physical association false false false velb-vosa-4 3261808 N/A 3261810 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3261809 unspecified role unspecified role unspecified role unspecified role Region 1-190 Region 1-190 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false