DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ yeh-2012-1 spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. DIP original experiment: DIP-253606X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair. Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. Only protein-protein interactions imex curation yeh-2012-2 spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm atomic force microsc atomic force microscopy AFM AFM atomic force microsc predetermined predetermined participant predetermined Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. DIP original experiment: DIP-253609X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair. Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. Only protein-protein interactions imex curation yeh-2012-3 spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm anti tag coip anti tag coimmunoprecipitation anti tag coip predetermined predetermined participant predetermined Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. DIP original experiment: DIP-253611X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair. Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. Only protein-protein interactions imex curation yeh-2012-4 spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm tem transmission electron microscopy tem predetermined predetermined participant predetermined Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. DIP original experiment: DIP-253607X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair. Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. Only protein-protein interactions imex curation yeh-2012-5 spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm pull down pull down predetermined predetermined participant predetermined Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. DIP original experiment: DIP-253610X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair. Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. Only protein-protein interactions imex curation yeh-2012-6 spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm dls dynamic light scattering dls predetermined predetermined participant predetermined Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. DIP original experiment: DIP-253608X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair. Yeh JI., Levine AS., Du S., Chinte U., Ghodke H., Wang H., Shi H., Hsieh CL., Conway JF., Van Houten B., Rapić-Otrin V. Only protein-protein interactions imex curation ddb2_human DNA damage-binding protein 2 Damage-specific DNA-binding protein 2 DDB p48 subunit UV-damaged DNA-binding protein 2 DDB2 protein protein human Homo sapiens Human MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQEEARTRK ddb1_human DNA damage-binding protein 1 DDB1 Damage-specific DNA-binding protein 1 UV-damaged DNA-binding factor DDB p127 subunit DNA damage-binding protein a UV-damaged DNA-binding protein 1 Xeroderma pigmentosum group E-complementing protein XPE-binding factor HBV X-associated protein 1 XAP1 protein protein human Homo sapiens Human MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH ddb1-ddb2-5 3242937 N/A 3242943 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm N/A 3242944 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm direct interaction direct interaction false false false ddb1-ddb2-6 3242938 N/A 3242943 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm N/A 3242944 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm direct interaction direct interaction false false false ddb2-ddb1-4 3242939 N/A 3242943 unspecified role unspecified role bait bait Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm N/A 3242944 unspecified role unspecified role prey prey His-tag His-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm physical association physical association false false false ddb1-ddb2-7 3242940 N/A 3242943 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm N/A 3242944 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm direct interaction direct interaction false false false ddb1-ddb2-8 3242941 N/A 3242943 unspecified role unspecified role prey prey Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm N/A 3242944 unspecified role unspecified role bait bait His-tag His-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm physical association physical association false false false ddb1-ddb2-9 3242942 N/A 3242943 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm N/A 3242944 unspecified role unspecified role unspecified role unspecified role spofr Spodoptera frugiperda (Fall armyworm) Fall armyworm direct interaction direct interaction false false false