DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ shaya-2011-1 in vitro In vitro crosslink cross-linking study crosslink weight by comassie molecular weight estimation by coomasie staining weight by comassie Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253928X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-2 in vitro In vitro crosslink cross-linking study crosslink weight by comassie molecular weight estimation by coomasie staining weight by comassie Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253931X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-3 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253932X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-4 ecolx Escherichia coli sls static light scattering sls predetermined predetermined participant predetermined Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253929X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-5 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253935X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-6 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253930X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-7 ecolx Escherichia coli sls static light scattering sls predetermined predetermined participant predetermined Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253933X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-8 ecolx Escherichia coli sls static light scattering sls predetermined predetermined participant predetermined Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253936X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation shaya-2011-9 in vitro In vitro crosslink cross-linking study crosslink weight by comassie molecular weight estimation by coomasie staining weight by comassie Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. DIP original experiment: DIP-253934X Proceedings of the National Academy of Sciences of the United States of America 2011 IMEx Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins. Shaya D., Kreir M., Robbins RA., Wong S., Hammon J., Brüggemann A., Minor DL. Only protein-protein interactions imex curation f7iva8_ruepo SPO0030 protein protein ruepo Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) Silicibacter pomeroyi MQRMQAFIDRPGFGRFITAVIMLNAVVLGMETSPYLMERWGGLILAADRICLGIFIVEIALKLTAQRQRFFLNGWNLFDFVIVGIALIPAAGGLSVLRALRILRVLRVISVAPRLRRVVEGFITALPGMASVFLLMTIIFYIGAVIATKLFAASFPDWFGDLGLSAYTLFQIMTLESWSMGIVRPVMQVYPYAWLFFVPFIMITTFAVVNLLVGLIVNSMQDAHHAEDGERTDAYRDEVLARLEQIDQRLNALGETKK q0vny2_alcbs ABO_1668 protein protein alcbs Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) MQATPSSVPANAWRQRLSAWLNSSLFANSITALILLNAIILGVETSSVAQERVGQWLTLVNQVILFAFTLEIALKLVAFGPRFFRSGWNVFDFLIVAISLTPASGPLAILRSLRILRVLRLLSSVKRLRMLVESLMQALPGIGWTAALLLMMFYIFAVMGTELFGEAFPQWFGSLGASIYSLFQIMTLESWSMGIARPVMEVYPLAWIFFVPFILISSFMVLNLFIAIIVSATQEVHESEQRAEREANNLIAHDERQEMLDLMRAMHAKIVALEAAQQGKAGQ q0abw0_alkeh Mlg_0322 protein protein alkeh Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) MSERQPDLVGHKVQHPEDETLRGRLAWFIDRPGTQYFIVGLILVNAITLGLMTSPEVTAYLQPWLGWVNTFIIAAFVVEISLRIIADGPRFVRSGWNLFDFSVVAISLVPDSGAFSVLRALRILKVLRLFSMVPRLRRIVEALLRAIPGIAWIALLLLVIFYVFAVMGTKLFAQSFPEWFGTLGASMYTLFQVMTLESWSMGIARPVIEAYPWAWIYFVSFILVSSFTVLNLFIGIIIESMQSAHWEAEDAKRIEQEQRAHDERLEMLQLIRDLSSKVDRLERRSGKR f7iva8_ruepo-1 3228481 N/A 3228490 unspecified role unspecified role unspecified role unspecified role Pore domain Region 122-258 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false q0vny2_alcbs-1 3228482 N/A 3228491 unspecified role unspecified role unspecified role unspecified role Pore domain Region 135-283 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false q0vny2_alcbs-2 3228483 N/A 3228491 unspecified role unspecified role unspecified role unspecified role Pore domain Region 135-283 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false f7iva8_ruepo-2 3228484 N/A 3228490 unspecified role unspecified role unspecified role unspecified role Pore domain Region 122-258 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false q0abw0_alkeh-1 3228485 N/A 3228492 unspecified role unspecified role unspecified role unspecified role Pore domain Region 142-288 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false f7iva8_ruepo-3 3228486 N/A 3228490 unspecified role unspecified role unspecified role unspecified role Pore domain Region 122-258 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false q0vny2_alcbs-3 3228487 N/A 3228491 unspecified role unspecified role unspecified role unspecified role Pore domain Region 135-283 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false q0abw0_alkeh-2 3228488 N/A 3228492 unspecified role unspecified role unspecified role unspecified role Pore domain Region 142-288 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false q0abw0_alkeh-3 3228489 N/A 3228492 unspecified role unspecified role unspecified role unspecified role Pore domain Region 142-288 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false