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<entrySet level="2" version="5" minorVersion="4" xsi:schemaLocation="http://psi.hupo.org/mi/mif http://psidev.sourceforge.net/mi/rel25/src/MIF254.xsd" xmlns="http://psi.hupo.org/mi/mif" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
    <entry>
        <source releaseDate="2017-08-31+01:00">
            <names>
                <shortLabel>DIP</shortLabel>
                <fullName>Database of Interacting Proteins</fullName>
            </names>
            <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="primary-reference" refTypeAc="MI:0358"/>
            </xref>
            <attributeList>
                <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
                <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
                <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
                <attribute name="postalAddress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
                <attribute name="url">http://dip.doe-mbi.ucla.edu/</attribute>
            </attributeList>
        </source>
        <experimentList>
            <experimentDescription id="3198475">
                <names>
                    <shortLabel>yanai-2009-1</shortLabel>
                </names>
                <bibref>
                    <xref>
                        <primaryRef db="pubmed" dbAc="MI:0446" id="19890330" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </bibref>
                <xref>
                    <primaryRef db="dip" dbAc="MI:0465" id="DIP-219598X" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15813216" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="imex" dbAc="MI:0670" id="IM-16365" refType="imex-primary" refTypeAc="MI:0662"/>
                    <secondaryRef db="doi" dbAc="MI:0574" id="10.1038/nature08512" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
                <hostOrganismList>
                    <hostOrganism ncbiTaxId="10090">
                        <names>
                            <shortLabel>mouse</shortLabel>
                            <fullName>Mus musculus</fullName>
                            <alias typeAc="MI:1041" type="synonym">Mouse</alias>
                        </names>
                    </hostOrganism>
                </hostOrganismList>
                <interactionDetectionMethod>
                    <names>
                        <shortLabel>comig non denat gel</shortLabel>
                        <fullName>comigration in non denaturing gel electrophoresis</fullName>
                        <alias typeAc="MI:1041" type="synonym">comig non denat gel</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0404" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608489" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactionDetectionMethod>
                <participantIdentificationMethod>
                    <names>
                        <shortLabel>western blot</shortLabel>
                        <fullName>western blot</fullName>
                        <alias typeAc="MI:0303" type="go synonym">Immuno blot</alias>
                        <alias typeAc="MI:1041" type="synonym">Immuno blot</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0113" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-973" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </participantIdentificationMethod>
                <attributeList>
                    <attribute name="author-list" nameAc="MI:0636">Yanai H., Ban T., Wang Z., Choi MK., Kawamura T., Negishi H., Nakasato M., Lu Y., Hangai S., Koshiba R., Savitsky D., Ronfani L., Akira S., Bianchi ME., Honda K., Tamura T., Kodama T., Taniguchi T.</attribute>
                    <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-219598X</attribute>
                    <attribute name="journal" nameAc="MI:0885">Nature</attribute>
                    <attribute name="publication year" nameAc="MI:0886">2009</attribute>
                    <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
                    <attribute name="title" nameAc="MI:1091">HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses.</attribute>
                    <attribute name="author-list" nameAc="MI:0636">Yanai H.,  Ban T.,  Wang Z.,  Choi MK.,  Kawamura T.,  Negishi H.,  Nakasato M.,  Lu Y.,  Hangai S.,  Koshiba R.,  Savitsky D.,  Ronfani L.,  Akira S.,  Bianchi ME.,  Honda K.,  Tamura T.,  Kodama T.,  Taniguchi T.</attribute>
                    <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
                    <attribute name="imex curation" nameAc="MI:0959"/>
                    <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
                </attributeList>
            </experimentDescription>
        </experimentList>
        <interactorList>
            <interactor id="3198476">
                <names>
                    <shortLabel>irf3_mouse</shortLabel>
                    <fullName>Interferon regulatory factor 3</fullName>
                    <alias typeAc="MI:0301" type="gene name">Irf3</alias>
                </names>
                <xref>
                    <primaryRef db="uniprotkb" dbAc="MI:0486" id="P70671" version="SP_60" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005829" secondary="cytosol" version="SP_178"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUST00000003284" version="SP_178" refType="transcript"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0050727" secondary="regulation of inflammatory response" version="SP_178"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="MINT-2737174" refType="intact-secondary"/>
                    <secondaryRef db="refseq" dbAc="MI:0481" id="XP_006541059.1"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005739" secondary="mitochondrion" version="SP_178"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUST00000209066" version="SP_178" refType="transcript"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-936440" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0043123" secondary="positive regulation of I-kappaB kinase/NF-kappaB signaling" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0043565" secondary="sequence-specific DNA binding" version="SP_178"/>
                    <secondaryRef db="mint" dbAc="MI:0471" id="P70671" version="SP_178"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR001346" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-9013973" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-936964" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0019904" secondary="protein domain specific binding" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0032496" secondary="response to lipopolysaccharide" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0035666" secondary="TRIF-dependent toll-like receptor signaling pathway" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-933541" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" secondary="identical protein binding" version="SP_178"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUST00000107834" version="SP_178" refType="transcript"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-3134975" version="SP_178"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR017855" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0001819" secondary="positive regulation of cytokine production" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-168928" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0002376" secondary="immune system process" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0060337" secondary="type I interferon signaling pathway" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0000978" secondary="RNA polymerase II cis-regulatory region sequence-specific DNA binding" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0060340" secondary="positive regulation of type I interferon-mediated signaling pathway" version="SP_178"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-7947049" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0032481" secondary="positive regulation of type I interferon production" version="SP_178"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036390" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0045893" secondary="positive regulation of transcription, DNA-templated" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-3134973" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0045944" secondary="positive regulation of transcription by RNA polymerase II" version="SP_178"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="7JFM" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-1169408" version="SP_178"/>
                    <secondaryRef db="refseq" dbAc="MI:0481" id="NP_058545.1"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR008984" version="SP_178"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSP00000003284" version="SP_178" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0001228" secondary="DNA-binding transcription activator activity, RNA polymerase II-specific" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005634" secondary="nucleus" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0098586" secondary="cellular response to virus" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0032727" secondary="positive regulation of interferon-alpha production" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0000981" secondary="DNA-binding transcription factor activity, RNA polymerase II-specific" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0042803" secondary="protein homodimerization activity" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0042981" secondary="regulation of apoptotic process" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-918233" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0010468" secondary="regulation of gene expression" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0031663" secondary="lipopolysaccharide-mediated signaling pathway" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" secondary="cytoplasm" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-3270619" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0032728" secondary="positive regulation of interferon-beta production" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0097300" secondary="programmed necrotic cell death" version="SP_178"/>
                    <secondaryRef db="reactome" dbAc="MI:0467" id="R-MMU-1606341" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:1990837" secondary="sequence-specific double-stranded DNA binding" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0071222" secondary="cellular response to lipopolysaccharide" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0043330" secondary="response to exogenous dsRNA" version="SP_178"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036388" version="SP_178"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSG00000003184" version="SP_178" refType="gene"/>
                    <secondaryRef db="refseq" dbAc="MI:0481" id="XP_006541058.1"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSP00000103465" version="SP_178" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0071360" secondary="cellular response to exogenous dsRNA" version="SP_178"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019817" version="SP_178"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019471" version="SP_178"/>
                    <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSMUSP00000146773" version="SP_178" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="dip" dbAc="MI:0465" id="DIP-29881N"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0006357" secondary="regulation of transcription by RNA polymerase II" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0009617" secondary="response to bacterium" version="SP_178"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0051607" secondary="defense response to virus" version="SP_178"/>
                </xref>
                <interactorType>
                    <names>
                        <shortLabel>protein</shortLabel>
                        <fullName>protein</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactorType>
                <organism ncbiTaxId="10090">
                    <names>
                        <shortLabel>mouse</shortLabel>
                        <fullName>Mus musculus</fullName>
                        <alias typeAc="MI:1041" type="synonym">Mouse</alias>
                    </names>
                </organism>
                <sequence>METPKPRILPWLVSQLDLGQLEGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQAWAEASGAYTPGKDKPDVSTWKRNFRSALNRKEVLRLAADNSKDPYDPHKVYEFVTPGARDFVHLGASPDTNGKSSLPHSQENLPKLFDGLILGPLKDEGSSDLAIVSDPSQQLPSPNVNNFLNPAPQENPLKQLLAEEQWEFEVTAFYRGRQVFQQTLFCPGGLRLVGSTADMTLPWQPVTLPDPEGFLTDKLVKEYVGQVLKGLGNGLALWQAGQCLWAQRLGHSHAFWALGEELLPDSGRGPDGEVHKDKDGAVFDLRPFVADLIAFMEGSGHSPRYTLWFCMGEMWPQDQPWVKRLVMVKVVPTCLKELLEMAREGGASSLKTVDLHISNSQPISLTSDQYKAYLQDLVEDMDFQATGNI</sequence>
                <attributeList>
                    <attribute name="comment" nameAc="MI:0612">mint</attribute>
                    <attribute name="comment" nameAc="MI:0612">homomint</attribute>
                    <attribute name="function" nameAc="MI:0613">Mediates interferon-stimulated response element (ISRE) promoter activation. Functions as a molecular switch for antiviral activity. DsRNA generated during the course of an viral infection leads to IRF3 phosphorylation on the C-terminal serine/threonine cluster. This induces a conformational change, leading to its dimerization, nuclear localization and association with CREB binding protein (CREBBP) to form dsRNA-activated factor 1 (DRAF1), a complex which activates the transcription of genes under the control of ISRE. The complex binds to the IE and PRDIII regions on the IFN-alpha and IFN-beta promoters respectively. IRF-3 does not have any transcription activation domains</attribute>
                </attributeList>
            </interactor>
        </interactorList>
        <interactionList>
            <interaction imexId="IM-16365-1" id="3198477">
                <names>
                    <shortLabel>irf3-4</shortLabel>
                </names>
                <xref>
                    <primaryRef db="dip" dbAc="MI:0465" id="DIP-185612E" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15813227" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
                    <secondaryRef db="imex" dbAc="MI:0670" id="IM-16365-1" refType="imex-primary" refTypeAc="MI:0662"/>
                </xref>
                <experimentList>
                    <experimentRef>3198475</experimentRef>
                </experimentList>
                <participantList>
                    <participant id="3198478">
                        <names>
                            <shortLabel>N/A</shortLabel>
                        </names>
                        <xref>
                            <primaryRef db="intact" dbAc="MI:0469" id="EBI-15813231" refType="identity" refTypeAc="MI:0356"/>
                        </xref>
                        <interactorRef>3198476</interactorRef>
                        <biologicalRole>
                            <names>
                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
                            <xref>
                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                            </xref>
                        </biologicalRole>
                        <experimentalRoleList>
                            <experimentalRole>
                                <names>
                                    <shortLabel>unspecified role</shortLabel>
                                    <fullName>unspecified role</fullName>
                                </names>
                                <xref>
                                    <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                                    <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                                </xref>
                            </experimentalRole>
                        </experimentalRoleList>
                        <hostOrganismList>
                            <hostOrganism ncbiTaxId="10090">
                                <names>
                                    <shortLabel>mouse</shortLabel>
                                    <fullName>Mus musculus</fullName>
                                    <alias typeAc="MI:1041" type="synonym">Mouse</alias>
                                </names>
                            </hostOrganism>
                        </hostOrganismList>
                    </participant>
                </participantList>
                <interactionType>
                    <names>
                        <shortLabel>physical association</shortLabel>
                        <fullName>physical association</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0915" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1813147" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactionType>
                <modelled>false</modelled>
                <intraMolecular>false</intraMolecular>
                <negative>false</negative>
            </interaction>
        </interactionList>
    </entry>
</entrySet>
